CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 203 & Codon = aCg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N203R203TnonsynaGgaCg6045910.97847728880-28882

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N203R203TaGgaCg591604All0.000113
N203R203TaGgaCg116116AY.30.001154
N203R203TaGgaCg113113AY.430.000501
N203R203TaGgaCg8585AY.40.000132
N203R203TaGgaCg7575AY.250.000451
N203R203TaGgaCg3838B.1.617.20.000143
N203R203TaGgaCg2121AY.470.000653
N203R203TaGgaCg1818AY.390.000445
N203R203TaGgaCg1010AY.1030.000062
N203R203TaGgaCg1010AY.340.00097
N203R203TaGgaCg99AY.440.000055
N203R203TaGgaCg99B.1.1770.000119
N203R203TaGgaCg77AY.1020.000186
N203R203TaGgaCg66AY.1000.000276
N203R203TaGgaCg16B.1.1.70.000001
N203R203TaGgaCg55AY.740.000578
N203R203TaGgaCg44AY.1200.000149
N203R203TaGgaCg44AY.140.000352
N203R203TaGgaCg44AY.290.000063
N203R203TaGgaCg44B.1.617.10.000516
N203R203TaGgaCg33AY.200.000117
N203R203TaGgaCg33AY.50.000062
N203R203TaGgaCg33AY.610.000314
N203R203TaGgaCg33B.10.000027
N203R203TaGgaCg22AY.1080.002205
N203R203TaGgaCg22AY.1160.000574
N203R203TaGgaCg22AY.1190.000071
N203R203TaGgaCg22AY.120.20.002571
N203R203TaGgaCg22AY.1210.000271
N203R203TaGgaCg22AY.16.10.00094
N203R203TaGgaCg22AY.230.000139
N203R203TaGgaCg22AY.4.20.000043
N203R203TaGgaCg22AY.450.000243
N203R203TaGgaCg22AY.46.60.000144
N203R203TaGgaCg22AY.510.001818
N203R203TaGgaCg22AY.680.000547
N203R203TaGgaCg22AY.98.10.000097
N203R203TaGgaCg12B.1.1.5260.003546
N203R203TaGgaCg11AY.1170.000085
N203R203TaGgaCg11AY.130.000161
N203R203TaGgaCg11AY.260.000028
N203R203TaGgaCg11AY.3.10.000085
N203R203TaGgaCg11AY.320.000532
N203R203TaGgaCg11AY.410.000294
N203R203TaGgaCg11AY.5.30.000337
N203R203TaGgaCg11AY.80.000606
N203R203TaGgaCg11AY.860.00083
N203R203TaGgaCg11AY.900.000684
N203R203TaGgaCg11AY.920.000287
N203R203TaGgaCg11AY.980.000079
N203R203TaGgaCg11AY.99.20.000092

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.