CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 203 & Codon = aAg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	203	R203K		nonsyn	aGg	aAg	1527570	5768	0.00377593	28880-28882

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	203	R203K	aGg	aAg	5768	1527570	All	0.001103
N	203	R203K	aGg	aAg	1135	1097212	B.1.1.7	0.001016
N	203	R203K	aGg	aAg	19	60904	P.1	0.000299
N	203	R203K	aGg	aAg	90	54365	B.1.1	0.001633
N	203	R203K	aGg	aAg	23	24536	B.1.1.519	0.000913
N	203	R203K	aGg	aAg	3	20812	P.1.14	0.000143
N	203	R203K	aGg	aAg	5	8544	C.37	0.00058
N	203	R203K	aGg	aAg	4	7848	Q.1	0.000505
N	203	R203K	aGg	aAg	8	6048	Q.8	0.001319
N	203	R203K	aGg	aAg	4	5343	P.1.17	0.000647
N	203	R203K	aGg	aAg	4	5272	P.2	0.000747
N	203	R203K	aGg	aAg	9	5162	B.1.1.37	0.001736
N	203	R203K	aGg	aAg	1888	5036	B.1	0.017293
N	203	R203K	aGg	aAg	7	4626	B.1.1.222	0.001428
N	203	R203K	aGg	aAg	1	4552	AD.2	0.000219
N	203	R203K	aGg	aAg	2	3620	P.1.10	0.000539
N	203	R203K	aGg	aAg	1	3198	B.1.1.28	0.000311
N	203	R203K	aGg	aAg	3	3191	B.1.1.318	0.000905
N	203	R203K	aGg	aAg	2	3054	B.1.1.1	0.000653
N	203	R203K	aGg	aAg	2	2911	B.1.1.70	0.000682
N	203	R203K	aGg	aAg	3	2840	B.1.1.434	0.001046
N	203	R203K	aGg	aAg	5	2780	B.1.1.311	0.001791
N	203	R203K	aGg	aAg	44	2544	P.1.16	0.016461
N	203	R203K	aGg	aAg	1	2373	B.1.1.33	0.000421
N	203	R203K	aGg	aAg	1	2236	B.1.1.369	0.000446
N	203	R203K	aGg	aAg	7	2216	P.1.1	0.002224
N	203	R203K	aGg	aAg	4	2214	B.1.1.306	0.001754
N	203	R203K	aGg	aAg	5	1865	B.1.1.39	0.002548
N	203	R203K	aGg	aAg	2	1759	B.1.1.25	0.001137
N	203	R203K	aGg	aAg	1	1758	C.36.3	0.000567
N	203	R203K	aGg	aAg	1	1471	B.1.1.50	0.000679
N	203	R203K	aGg	aAg	5	1418	B.1.1.372	0.003444
N	203	R203K	aGg	aAg	9	1337	P.1.12	0.004356
N	203	R203K	aGg	aAg	1	1312	B.1.1.277	0.000759
N	203	R203K	aGg	aAg	1	1255	B.1.1.348	0.000796
N	203	R203K	aGg	aAg	2	1200	AZ.2	0.001642
N	203	R203K	aGg	aAg	1	1118	B.1.1.216	0.00089
N	203	R203K	aGg	aAg	2	1094	P.1.13	0.001797
N	203	R203K	aGg	aAg	1	890	B.1.1.10	0.001115
N	203	R203K	aGg	aAg	1	870	B.1.1.153	0.001095
N	203	R203K	aGg	aAg	12	753	B.1.1.432	0.01519
N	203	R203K	aGg	aAg	1	702	B.1.1.433	0.001425
N	203	R203K	aGg	aAg	1	674	B.1.1.198	0.001468
N	203	R203K	aGg	aAg	1	661	B.1.1.189	0.001513
N	203	R203K	aGg	aAg	1	641	B.1.1.263	0.001558
N	203	R203K	aGg	aAg	1	638	B.1.1.523	0.001563
N	203	R203K	aGg	aAg	2	630	AZ.3	0.00304
N	203	R203K	aGg	aAg	3	578	C.30	0.005181
N	203	R203K	aGg	aAg	574	574	B.1.609	0.275168
N	203	R203K	aGg	aAg	2	523	B.1.1.312	0.003824
N	203	R203K	aGg	aAg	1	395	B.1.1.307	0.002532
N	203	R203K	aGg	aAg	185	357	B.1.2	0.001629
N	203	R203K	aGg	aAg	1	352	B.1.1.409	0.002833
N	203	R203K	aGg	aAg	1	322	B.1.1.231	0.003096
N	203	R203K	aGg	aAg	1	297	B.1.1.258	0.003257
N	203	R203K	aGg	aAg	3	269	B.1.1.205	0.011152
N	203	R203K	aGg	aAg	66	258	B.1.177	0.000869
N	203	R203K	aGg	aAg	4	247	C.37.1	0.010471
N	203	R203K	aGg	aAg	1	225	B.1.1.354	0.004386
N	203	R203K	aGg	aAg	62	215	B.1.526	0.001457
N	203	R203K	aGg	aAg	1	200	B.1.1.528	0.004808
N	203	R203K	aGg	aAg	199	199	A.23.1	0.140141
N	203	R203K	aGg	aAg	1	198	S.1	0.00495
N	203	R203K	aGg	aAg	192	192	B.1.218	0.989691
N	203	R203K	aGg	aAg	86	173	B	0.010992
N	203	R203K	aGg	aAg	21	171	B.1.375	0.017213
N	203	R203K	aGg	aAg	3	168	B.1.1.210	0.017143
N	203	R203K	aGg	aAg	1	168	B.1.1.226	0.005814
N	203	R203K	aGg	aAg	75	163	B.1.596	0.006535
N	203	R203K	aGg	aAg	77	148	B.1.177.73	0.043601
N	203	R203K	aGg	aAg	133	148	B.1.632	0.892617
N	203	R203K	aGg	aAg	1	144	B.1.1.236	0.006897
N	203	R203K	aGg	aAg	1	140	B.1.1.526	0.003546
N	203	R203K	aGg	aAg	1	118	B.1.1.315	0.008475
N	203	R203K	aGg	aAg	1	117	B.1.1.356	0.008547
N	203	R203K	aGg	aAg	1	114	B.1.1.61	0.008772
N	203	R203K	aGg	aAg	1	96	B.1.1.118	0.010204
N	203	R203K	aGg	aAg	1	83	B.1.1.440	0.011765
N	203	R203K	aGg	aAg	22	83	B.1.160	0.000686
N	203	R203K	aGg	aAg	15	79	B.1.221	0.001065
N	203	R203K	aGg	aAg	16	78	B.1.617.2	0.00006
N	203	R203K	aGg	aAg	1	55	B.1.1.123	0.017857
N	203	R203K	aGg	aAg	50	54	B.1.509	0.04329
N	203	R203K	aGg	aAg	1	53	C.39	0.018868
N	203	R203K	aGg	aAg	1	51	AN.1	0.02
N	203	R203K	aGg	aAg	49	49	B.1.164	0.731343
N	203	R203K	aGg	aAg	2	47	AY.4.2.1	0.000298
N	203	R203K	aGg	aAg	13	47	AY.44	0.000079
N	203	R203K	aGg	aAg	9	47	B.1.351	0.000268
N	203	R203K	aGg	aAg	5	43	B.1.177.7	0.000824
N	203	R203K	aGg	aAg	1	42	B.1.1.201	0.02439
N	203	R203K	aGg	aAg	41	41	AY.6	0.001686
N	203	R203K	aGg	aAg	15	39	B.1.429	0.000353
N	203	R203K	aGg	aAg	2	37	K.1	0.047619
N	203	R203K	aGg	aAg	18	36	B.1.595	0.004697
N	203	R203K	aGg	aAg	15	35	AY.43	0.000066
N	203	R203K	aGg	aAg	1	34	B.1.1.162	0.029412
N	203	R203K	aGg	aAg	17	32	B.1.576	0.015413
N	203	R203K	aGg	aAg	3	29	AY.25	0.000018
N	203	R203K	aGg	aAg	4	29	B.1.36	0.000584
N	203	R203K	aGg	aAg	1	27	B.1.1.82	0.038462
N	203	R203K	aGg	aAg	4	25	B.40	0.001457
N	203	R203K	aGg	aAg	16	24	AY.20	0.000622
N	203	R203K	aGg	aAg	1	22	B.1.1.340	0.045455
N	203	R203K	aGg	aAg	19	22	B.1.247	0.283582
N	203	R203K	aGg	aAg	14	22	B.1.258	0.000932
N	203	R203K	aGg	aAg	20	22	B.15	0.350877
N	203	R203K	aGg	aAg	11	21	AY.4	0.000017
N	203	R203K	aGg	aAg	3	20	B.1.580	0.012195
N	203	R203K	aGg	aAg	9	19	B.1.564	0.003833
N	203	R203K	aGg	aAg	4	19	B.1.617.1	0.000516
N	203	R203K	aGg	aAg	5	16	AY.3	0.00005
N	203	R203K	aGg	aAg	8	16	B.1.311	0.002197
N	203	R203K	aGg	aAg	9	16	B.1.623	0.004828
N	203	R203K	aGg	aAg	1	14	B.1.160.32	0.004292
N	203	R203K	aGg	aAg	7	14	B.1.427	0.000353
N	203	R203K	aGg	aAg	12	13	B.1.517	0.005124
N	203	R203K	aGg	aAg	1	13	B.1.525	0.000113
N	203	R203K	aGg	aAg	2	13	B.1.621	0.000177
N	203	R203K	aGg	aAg	6	12	AY.23	0.000418
N	203	R203K	aGg	aAg	6	11	A	0.002322
N	203	R203K	aGg	aAg	1	11	AY.103	0.000006
N	203	R203K	aGg	aAg	1	11	AY.34	0.000097
N	203	R203K	aGg	aAg	6	11	AY.92	0.001724
N	203	R203K	aGg	aAg	5	10	AY.52	0.004072
N	203	R203K	aGg	aAg	1	10	B.1.169	0.014925
N	203	R203K	aGg	aAg	5	10	B.1.206	0.004078
N	203	R203K	aGg	aAg	10	10	B.1.232	0.005373
N	203	R203K	aGg	aAg	10	10	B.1.497	0.003148
N	203	R203K	aGg	aAg	5	10	B.3	0.004153
N	203	R203K	aGg	aAg	4	9	AY.30	0.001583
N	203	R203K	aGg	aAg	4	9	B.1.177.12	0.000607
N	203	R203K	aGg	aAg	1	9	B.1.177.31	0.011494
N	203	R203K	aGg	aAg	5	9	B.1.234	0.00066
N	203	R203K	aGg	aAg	2	8	AY.102	0.000053
N	203	R203K	aGg	aAg	1	8	AY.26	0.000028
N	203	R203K	aGg	aAg	4	8	AY.68	0.001095
N	203	R203K	aGg	aAg	4	8	B.1.378	0.027397
N	203	R203K	aGg	aAg	5	8	B.1.637	0.000365
N	203	R203K	aGg	aAg	3	8	B.6	0.00273
N	203	R203K	aGg	aAg	4	7	A.2.5	0.001996
N	203	R203K	aGg	aAg	3	7	AY.42	0.000121
N	203	R203K	aGg	aAg	4	7	B.1.210	0.008529
N	203	R203K	aGg	aAg	4	7	B.1.243	0.000278
N	203	R203K	aGg	aAg	4	7	B.1.396	0.002823
N	203	R203K	aGg	aAg	3	7	B.1.538	0.024194
N	203	R203K	aGg	aAg	3	6	AY.75.1	0.000541
N	203	R203K	aGg	aAg	3	6	B.1.177.86	0.00055
N	203	R203K	aGg	aAg	3	6	B.1.284	0.039474
N	203	R203K	aGg	aAg	3	6	B.1.459	0.012245
N	203	R203K	aGg	aAg	6	6	B.1.544	0.036145
N	203	R203K	aGg	aAg	3	6	B.1.612	0.007958
N	203	R203K	aGg	aAg	3	6	B.1.94	0.081081
N	203	R203K	aGg	aAg	3	5	A.1	0.000846
N	203	R203K	aGg	aAg	3	5	AY.100	0.000138
N	203	R203K	aGg	aAg	1	5	AY.29	0.000016
N	203	R203K	aGg	aAg	3	5	AY.95	0.002283
N	203	R203K	aGg	aAg	2	5	B.1.128	0.001271
N	203	R203K	aGg	aAg	2	5	B.1.139	0.001466
N	203	R203K	aGg	aAg	3	5	B.1.258.17	0.000312
N	203	R203K	aGg	aAg	2	5	B.1.620	0.001892
N	203	R203K	aGg	aAg	3	5	B.1.628	0.001057
N	203	R203K	aGg	aAg	4	4	AY.4.2	0.000087
N	203	R203K	aGg	aAg	2	4	AY.5	0.000041
N	203	R203K	aGg	aAg	3	4	B.1.147	0.002268
N	203	R203K	aGg	aAg	2	4	B.1.149	0.006849
N	203	R203K	aGg	aAg	1	4	B.1.177.52	0.001757
N	203	R203K	aGg	aAg	2	4	B.1.177.56	0.001335
N	203	R203K	aGg	aAg	2	4	B.1.201	0.011364
N	203	R203K	aGg	aAg	3	4	B.1.214	0.010989
N	203	R203K	aGg	aAg	2	4	B.1.349	0.00143
N	203	R203K	aGg	aAg	2	4	B.1.351.3	0.001753
N	203	R203K	aGg	aAg	2	4	B.1.36.36	0.001204
N	203	R203K	aGg	aAg	1	4	B.1.362	0.001541
N	203	R203K	aGg	aAg	2	4	B.1.367	0.001585
N	203	R203K	aGg	aAg	2	4	B.1.438.1	0.000215
N	203	R203K	aGg	aAg	2	4	B.1.465	0.007605
N	203	R203K	aGg	aAg	2	4	B.1.627	0.00404
N	203	R203K	aGg	aAg	1	3	B.1.131	0.008772
N	203	R203K	aGg	aAg	1	3	B.1.177.17	0.000821
N	203	R203K	aGg	aAg	1	3	B.1.177.81	0.000189
N	203	R203K	aGg	aAg	1	3	B.1.239	0.001221
N	203	R203K	aGg	aAg	2	3	B.1.336	0.004878
N	203	R203K	aGg	aAg	1	3	B.1.416.1	0.001563
N	203	R203K	aGg	aAg	2	3	B.1.432	0.022472
N	203	R203K	aGg	aAg	2	3	B.1.485	0.029851
N	203	R203K	aGg	aAg	1	2	A.2	0.000662
N	203	R203K	aGg	aAg	1	2	A.2.5.2	0.001572
N	203	R203K	aGg	aAg	2	2	A.3	0.004193
N	203	R203K	aGg	aAg	1	2	AA.1	0.007246
N	203	R203K	aGg	aAg	1	2	AY.110	0.000113
N	203	R203K	aGg	aAg	1	2	AY.113	0.000142
N	203	R203K	aGg	aAg	1	2	AY.13	0.000161
N	203	R203K	aGg	aAg	2	2	AY.36	0.000296
N	203	R203K	aGg	aAg	1	2	AY.39.1	0.00004
N	203	R203K	aGg	aAg	1	2	AY.55	0.000917
N	203	R203K	aGg	aAg	1	2	AY.59	0.00053
N	203	R203K	aGg	aAg	1	2	AY.65	0.000533
N	203	R203K	aGg	aAg	1	2	AY.75	0.000056
N	203	R203K	aGg	aAg	1	2	AY.9.2	0.000037
N	203	R203K	aGg	aAg	2	2	AY.96	0.004149
N	203	R203K	aGg	aAg	1	2	AY.99.2	0.000092
N	203	R203K	aGg	aAg	1	2	B.1.104	0.00369
N	203	R203K	aGg	aAg	2	2	B.1.113	0.03125
N	203	R203K	aGg	aAg	1	2	B.1.177.19	0.001431
N	203	R203K	aGg	aAg	1	2	B.1.177.4	0.000211
N	203	R203K	aGg	aAg	1	2	B.1.177.57	0.000281
N	203	R203K	aGg	aAg	1	2	B.1.177.58	0.001332
N	203	R203K	aGg	aAg	1	2	B.1.177.82	0.000477
N	203	R203K	aGg	aAg	1	2	B.1.179	0.003759
N	203	R203K	aGg	aAg	1	2	B.1.187	0.033333
N	203	R203K	aGg	aAg	1	2	B.1.215	0.009615
N	203	R203K	aGg	aAg	1	2	B.1.235	0.002519
N	203	R203K	aGg	aAg	1	2	B.1.237	0.004975
N	203	R203K	aGg	aAg	1	2	B.1.240	0.000216
N	203	R203K	aGg	aAg	1	2	B.1.301	0.005917
N	203	R203K	aGg	aAg	1	2	B.1.326	0.007576
N	203	R203K	aGg	aAg	1	2	B.1.333	0.010526
N	203	R203K	aGg	aAg	1	2	B.1.35	0.008475
N	203	R203K	aGg	aAg	1	2	B.1.351.2	0.000303
N	203	R203K	aGg	aAg	1	2	B.1.356	0.001727
N	203	R203K	aGg	aAg	1	2	B.1.36.10	0.004785
N	203	R203K	aGg	aAg	1	2	B.1.36.2	0.010753
N	203	R203K	aGg	aAg	1	2	B.1.36.39	0.002217
N	203	R203K	aGg	aAg	1	2	B.1.389	0.001002
N	203	R203K	aGg	aAg	1	2	B.1.393	0.028571
N	203	R203K	aGg	aAg	1	2	B.1.397	0.004854
N	203	R203K	aGg	aAg	1	2	B.1.404	0.001302
N	203	R203K	aGg	aAg	1	2	B.1.406	0.006061
N	203	R203K	aGg	aAg	1	2	B.1.413	0.004255
N	203	R203K	aGg	aAg	2	2	B.1.416	0.002538
N	203	R203K	aGg	aAg	1	2	B.1.428	0.00102
N	203	R203K	aGg	aAg	1	2	B.1.433	0.003195
N	203	R203K	aGg	aAg	1	2	B.1.468	0.005714
N	203	R203K	aGg	aAg	1	2	B.1.470	0.001404
N	203	R203K	aGg	aAg	2	2	B.1.503	0.004975
N	203	R203K	aGg	aAg	1	2	B.1.524	0.001406
N	203	R203K	aGg	aAg	1	2	B.1.530	0.007143
N	203	R203K	aGg	aAg	1	2	B.1.540	0.009709
N	203	R203K	aGg	aAg	1	2	B.1.557	0.05
N	203	R203K	aGg	aAg	1	2	B.1.565	0.00081
N	203	R203K	aGg	aAg	1	2	B.1.575	0.000303
N	203	R203K	aGg	aAg	1	2	B.1.578	0.017857
N	203	R203K	aGg	aAg	1	2	B.1.581	0.009434
N	203	R203K	aGg	aAg	1	2	B.1.582	0.000491
N	203	R203K	aGg	aAg	1	2	B.1.600	0.005848
N	203	R203K	aGg	aAg	1	2	B.1.605	0.005952
N	203	R203K	aGg	aAg	1	2	B.1.606	0.006024
N	203	R203K	aGg	aAg	1	2	B.1.619	0.000871
N	203	R203K	aGg	aAg	1	2	B.1.634	0.003425
N	203	R203K	aGg	aAg	1	2	B.1.78	0.008547
N	203	R203K	aGg	aAg	1	2	B.29	0.003509
N	203	R203K	aGg	aAg	1	2	B.3.1	0.001658
N	203	R203K	aGg	aAg	2	2	B.31	0.007463
N	203	R203K	aGg	aAg	1	2	B.52	0.010101
N	203	R203K	aGg	aAg	2	2	B.61	0.011494
N	203	R203K	aGg	aAg	1	2	Y.1	0.012821
N	203	R203K	aGg	aAg	1	1	AY.106	0.000335
N	203	R203K	aGg	aAg	1	1	AY.12	0.000316
N	203	R203K	aGg	aAg	1	1	AY.40	0.000964
N	203	R203K	aGg	aAg	1	1	AY.46.1	0.001027
N	203	R203K	aGg	aAg	1	1	AY.53	0.000288
N	203	R203K	aGg	aAg	1	1	B.1.157	0.002985
N	203	R203K	aGg	aAg	1	1	B.1.177.18	0.00116
N	203	R203K	aGg	aAg	1	1	B.1.177.40	0.005155
N	203	R203K	aGg	aAg	1	1	B.1.177.54	0.000606
N	203	R203K	aGg	aAg	1	1	B.1.462	0.007246
N	203	R203K	aGg	aAg	1	1	B.1.498	0.020408
N	203	R203K	aGg	aAg	1	1	B.1.593	0.01087
N	203	R203K	aGg	aAg	1	1	B.1.595.4	0.007299

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.