CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 201

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N201S201InonsynaGcaTc29462946128874-28876
N201S201SsynagCagT101010090.9990128874-28876
N201S201SsynAGcTCc101010.00099009928874-28876
N201S201GnonsynAgcGgc6396360.99530528874-28876
N201S201GnonsynAgCGgA63920.0031298928874-28876
N201S201GnonsynAgCGgT63910.0015649528874-28876
N201S201NnonsynaGcaAc416416128874-28876
N201S201CnonsynAgcTgc170170128874-28876
N201S201RnonsynAgcCgc1181060.89830528874-28876
N201S201RnonsynagCagA118120.10169528874-28876
N201S201deldelAGC---6464128874-28876
N201S201del1delagCag-1212128874-28876
N201S201TnonsynaGcaCc430.7528874-28876
N201S201del2delaGCa--430.7528874-28876
N201S201TnonsynaGCaCA410.2528874-28876
N201S201del2delAGc--c410.2528874-28876
N201S201DnonsynAGcGAc33128874-28876
N201S201FnonsynAGcTTc33128874-28876
N201S201HnonsynAGcCAc22128874-28876
N201S201AnonsynAGcGCc11128874-28876
N201S201EnonsynAGCGAA11128874-28876
N201S201KnonsynaGCaAA11128874-28876

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N201S201IaGcaTc29462946All0.000563
N201S201IaGcaTc15591559B.1.619.11
N201S201IaGcaTc11131113B.1.6190.969512
N201S201SagCagT10091010All0.000193
N201S201SAGcTCc11010All0
N201S201GAgcGgc636639All0.000122
N201S201GAgCGgA2639All0
N201S201GAgCGgT1639All0
N201S201NaGcaAc416416All0.00008
N201S201SagCagT392392AY.4.20.008502
N201S201SagCagT192193B.1.1.70.000172
N201S201SAGcTCc1193B.1.1.70.000001
N201S201GAgcGgc193193B.1.6090.092522
N201S201CAgcTgc170170All0.000033
N201S201GAgcGgc152152B.1.1.70.000136
N201S201RAgcCgc106118All0.00002
N201S201RagCagA12118All0.000002
N201S201IaGcaTc111111B.10.001017
N201S201GAgcGgc9595AY.470.002955
N201S201RAgcCgc9090AY.440.000548
N201S201SagCagT8181AY.40.000126
N201S201delAGC---6464All0.000012
N201S201NaGcaAc4949AY.1010.024031
N201S201NaGcaAc4949AY.440.000298
N201S201CAgcTgc4949B.1.1.70.000044
N201S201SagCagT4949P.10.000772
N201S201SagCagT4646AY.700.009591
N201S201NaGcaAc4343B.1.5960.003747
N201S201SagCagT3131B.1.617.20.000117
N201S201GAgcGgc3030AY.1030.000186
N201S201SagCagT3030B.1.10.000544
N201S201SagCagT2929AY.250.000174
N201S201SagCagT2929AY.750.001625
N201S201NaGcaAc2727B.1.1.70.000024
N201S201GAgcGgc2727B.1.2580.001797
N201S201NaGcaAc2525AY.140.0022
N201S201GAgcGgc2121B.10.000192
N201S201IaGcaTc2121B.1.4670.84
N201S201CAgcTgc1818B.1.2580.001198
N201S201GAgcGgc1717AY.40.000026
N201S201NaGcaAc1717AY.46.60.001228
N201S201IaGcaTc1717B.1.5210.084577
N201S201NaGcaAc1616AY.40.000025
N201S201CAgcTgc1616B.1.1.580.086022
N201S201IaGcaTc1616C.360.014572
N201S201CAgcTgc1515AY.40.000023
N201S201NaGcaAc1313B.1.617.20.000049
N201S201SagCagT1313B.1.6370.00095
N201S201del1agCag-1212All0.000002
N201S201NaGcaAc1212AY.1180.000752
N201S201NaGcaAc1212AY.46.30.011204
N201S201NaGcaAc1212B.10.00011
N201S201NaGcaAc1212B.1.3240.019262
N201S201CAgcTgc1111B.10.000101
N201S201delAGC---1111B.10.000101
N201S201delAGC---1111B.1.1.70.00001
N201S201GAgcGgc1111B.1.1600.000343
N201S201SagCagT1010AY.1030.000062
N201S201CAgcTgc1010AY.30.000099
N201S201IaGcaTc1010AY.40.000016
N201S201IaGcaTc88AY.4.20.000174
N201S201NaGcaAc88B.1.10.000145
N201S201SagCagT77AY.430.000031
N201S201IaGcaTc77AY.440.000043
N201S201NaGcaAc77B.1.1.5190.000278
N201S201SagCagT77B.1.20.000062
N201S201NaGcaAc77B.1.3510.000208
N201S201NaGcaAc77B.1.4290.000165
N201S201GAgcGgc77B.1.6210.00062
N201S201CAgcTgc66AY.250.000036
N201S201NaGcaAc66AY.30.00006
N201S201GAgcGgc66AY.4.40.002455
N201S201IaGcaTc66AY.430.000027
N201S201IaGcaTc66B.1.1.4340.002091
N201S201GAgcGgc66B.1.20.000053
N201S201NaGcaAc66B.1.2430.000418
N201S201GAgcGgc66B.1.617.20.000023
N201S201GAgcGgc66P.1.100.001617
N201S201SagCagT55B.1.1.5190.000199
N201S201CAgcTgc55B.1.20.000044
N201S201NaGcaAc55B.1.5260.000118
N201S201delAGC---55D.20.000375
N201S201IaGcaTc55P.10.000079
N201S201del2aGCa--34All0.000001
N201S201TaGcaCc34All0.000001
N201S201del2AGc--c14All0
N201S201TaGCaCA14All0
N201S201NaGcaAc44AY.250.000024
N201S201SagCagT44AY.30.00004
N201S201NaGcaAc44AY.390.000099
N201S201SagCagT44AY.440.000024
N201S201GAgcGgc34AY.440.000018
N201S201GAgCGgA14AY.440.000006
N201S201NaGcaAc44AY.980.000316
N201S201IaGcaTc44B0.000511
N201S201IaGcaTc44B.1.1.370.000771
N201S201NaGcaAc44B.1.20.000035
N201S201SagCagT44B.1.2100.008529
N201S201CAgcTgc44B.1.4290.000094
N201S201NaGcaAc44B.1.466.20.001565
N201S201IaGcaTc44B.1.617.20.000015
N201S201CAgcTgc44B.1.617.20.000015
N201S201delAGC---44B.1.617.20.000015
N201S201IaGcaTc44C.260.029412
N201S201del1agCag-44P.10.000063
N201S201del1agCag-44P.1.140.000191
N201S201SagCagT44P.1.70.001277
N201S201DAGcGAc330.166667
N201S201SagCagT33AD.20.000657
N201S201DAGcGAc33All0.000001
N201S201FAGcTTc33All0.000001
N201S201SagCagT33AY.1000.000138
N201S201GAgcGgc33AY.1130.000427
N201S201SagCagT33AY.120.000948
N201S201GAgcGgc33AY.20.001068
N201S201IaGcaTc33AY.200.000117
N201S201SagCagT33AY.260.000085
N201S201GAgcGgc33AY.420.000121
N201S201IaGcaTc33AY.50.000062
N201S201SagCagT33AY.610.000314
N201S201NaGcaAc33AY.700.000626
N201S201NaGcaAc33AY.9.20.00011
N201S201SagCagT33B.10.000027
N201S201CAgcTgc33B.1.10.000054
N201S201SagCagT33B.1.1.700.001023
N201S201IaGcaTc33B.1.4270.000151
N201S201RAgcCgc33B.1.5300.021429
N201S201CAgcTgc33B.1.6370.000219
N201S201CAgcTgc33P.10.000047
N201S201NaGcaAc33P.10.000047
N201S201NaGcaAc220.111111
N201S201GAgCGgA120.055556
N201S201RagCagA120.055556
N201S201GAgcGgc120.055556
N201S201RAgcCgc120.055556
N201S201GAgcGgc22A0.000774
N201S201HAGcCAc22All0
N201S201delAGC---22AY.1000.000092
N201S201IaGcaTc22AY.1000.000092
N201S201NaGcaAc22AY.1030.000012
N201S201NaGcaAc22AY.1190.000071
N201S201CAgcTgc22AY.1200.000074
N201S201CAgcTgc22AY.200.000078
N201S201GAgcGgc22AY.200.000078
N201S201RAgcCgc12AY.250.000006
N201S201RagCagA12AY.250.000006
N201S201IaGcaTc22AY.260.000057
N201S201RagCagA22AY.270.000129
N201S201GAgcGgc22AY.290.000032
N201S201SagCagT22AY.290.000032
N201S201GAgcGgc22AY.30.00002
N201S201SagCagT22AY.3.10.000171
N201S201delAGC---22AY.40.000003
N201S201delAGC---22AY.400.001929
N201S201CAgcTgc22AY.430.000009
N201S201GAgcGgc22AY.430.000009
N201S201SagCagT22AY.46.40.000329
N201S201SagCagT22AY.470.000062
N201S201delAGC---22AY.500.001599
N201S201NaGcaAc22AY.610.00021
N201S201IaGcaTc22AY.690.000373
N201S201delAGC---22AY.750.000112
N201S201IaGcaTc22AY.9.10.000167
N201S201SagCagT22AY.98.10.000097
N201S201RAgcCgc12B.10.000009
N201S201RagCagA12B.10.000009
N201S201IaGcaTc22B.1.10.000036
N201S201SagCagT22B.1.1.2140.000111
N201S201NaGcaAc22B.1.1.3060.000877
N201S201SagCagT22B.1.1.3620.011236
N201S201GAgcGgc22B.1.1.5190.000079
N201S201NaGcaAc22B.1.1.630.000772
N201S201RagCagA12B.1.1.70.000001
N201S201RAgcCgc12B.1.1.70.000001
N201S201NaGcaAc22B.1.1770.000026
N201S201NaGcaAc22B.1.177.570.000562
N201S201NaGcaAc22B.1.2210.000142
N201S201GAgcGgc22B.1.2430.000139
N201S201NaGcaAc22B.1.2580.000133
N201S201delAGC---22B.1.3510.000059
N201S201GAgcGgc22B.1.360.000292
N201S201SagCagT22B.1.36.180.00084
N201S201SagCagT22B.1.36.290.001035
N201S201IaGcaTc22B.1.3950.014085
N201S201GAgcGgc22B.1.3980.005952
N201S201CAgcTgc22B.1.4270.000101
N201S201RagCagA22B.1.4270.000101
N201S201GAgcGgc22B.1.4290.000047
N201S201GAgcGgc22B.1.5260.000047
N201S201IaGcaTc22B.1.6090.000959
N201S201del2aGCa--22B.1.617.20.000008
N201S201GAgcGgc22B.1.6180.008065
N201S201SagCagT22B.400.000729
N201S201GAgcGgc22P.10.000032
N201S201SagCagT22P.1.120.000968
N201S201SagCagT22P.20.000373
N201S201CAgcTgc22Q.80.00033
N201S201KaGCaAA110.055556
N201S201IaGcaTc110.055556
N201S201HAGcCAc110.055556
N201S201EAGCGAA110.055556
N201S201IaGcaTc11A.10.000282
N201S201SagCagT11A.23.10.000704
N201S201RagCagA11A.270.001656
N201S201EAGCGAA11All0
N201S201AAGcGCc11All0
N201S201KaGCaAA11All0
N201S201GAgcGgc11AY.1000.000046
N201S201CAgcTgc11AY.1000.000046
N201S201IaGcaTc11AY.1020.000027
N201S201GAgcGgc11AY.1020.000027
N201S201NaGcaAc11AY.1080.001103
N201S201IaGcaTc11AY.1100.000113
N201S201SagCagT11AY.1160.000287
N201S201SagCagT11AY.1170.000085
N201S201IaGcaTc11AY.1190.000035
N201S201NaGcaAc11AY.1200.000037
N201S201RAgcCgc11AY.1200.000037
N201S201IaGcaTc11AY.140.000088
N201S201GAgcGgc11AY.190.00114
N201S201SagCagT11AY.200.000039
N201S201IaGcaTc11AY.230.00007
N201S201RAgcCgc11AY.230.00007
N201S201NaGcaAc11AY.260.000028
N201S201NaGcaAc11AY.290.000016
N201S201CAgcTgc11AY.290.000016
N201S201CAgcTgc11AY.300.000396
N201S201NaGcaAc11AY.300.000396
N201S201CAgcTgc11AY.330.000067
N201S201GAgcGgc11AY.370.000316
N201S201IaGcaTc11AY.39.10.00004
N201S201GAgcGgc11AY.39.10.00004
N201S201TaGCaCA11AY.40.000002
N201S201RAgcCgc11AY.40.000002
N201S201NaGcaAc11AY.4.10.000737
N201S201GAgcGgc11AY.4.20.000022
N201S201IaGcaTc11AY.4.50.000107
N201S201RAgcCgc11AY.4.50.000107
N201S201delAGC---11AY.430.000004
N201S201RAgcCgc11AY.430.000004
N201S201NaGcaAc11AY.430.000004
N201S201NaGcaAc11AY.450.000122
N201S201delAGC---11AY.460.000104
N201S201IaGcaTc11AY.46.60.000072
N201S201NaGcaAc11AY.470.000031
N201S201GAgcGgc11AY.50.000021
N201S201SagCagT11AY.530.000288
N201S201IaGcaTc11AY.540.000095
N201S201SagCagT11AY.60.000041
N201S201delAGC---11AY.650.000533
N201S201GAgcGgc11AY.690.000187
N201S201SagCagT11AY.70.000196
N201S201GAgcGgc11AY.70.000196
N201S201delAGC---11AY.710.000475
N201S201NaGcaAc11AY.740.000116
N201S201NaGcaAc11AY.870.000833
N201S201SagCagT11AY.9.20.000037
N201S201delAGC---11AY.9.20.000037
N201S201SagCagT11AY.91.10.004065
N201S201GAgcGgc11AY.980.000079
N201S201IaGcaTc11AZ.20.000821
N201S201NaGcaAc11B0.000128
N201S201GAgcGgc11B.1.1.2220.000204
N201S201NaGcaAc11B.1.1.2220.000204
N201S201SagCagT11B.1.1.250.000569
N201S201CAgcTgc11B.1.1.280.000311
N201S201NaGcaAc11B.1.1.3030.002762
N201S201NaGcaAc11B.1.1.3480.000796
N201S201CAgcTgc11B.1.1.4160.000905
N201S201delAGC---11B.1.1.4320.001266
N201S201CAgcTgc11B.1.1.500.000679
N201S201CAgcTgc11B.1.1.5190.00004
N201S201NaGcaAc11B.1.1.5260.003546
N201S201FAGcTTc11B.1.1.70.000001
N201S201del2aGCa--11B.1.1.70.000001
N201S201del1agCag-11B.1.1.70.000001
N201S201IaGcaTc11B.1.1.700.000341
N201S201IaGcaTc11B.1.1100.004525
N201S201NaGcaAc11B.1.1390.000733
N201S201NaGcaAc11B.1.1600.000031
N201S201TaGcaCc11B.1.1600.000031
N201S201del2AGc--c11B.1.1770.000013
N201S201CAgcTgc11B.1.1770.000013
N201S201SagCagT11B.1.1770.000013
N201S201delAGC---11B.1.1770.000013
N201S201IaGcaTc11B.1.1770.000013
N201S201IaGcaTc11B.1.177.210.000076
N201S201NaGcaAc11B.1.177.320.00135
N201S201GAgCGgT11B.1.177.630.002703
N201S201GAgcGgc11B.1.177.70.000165
N201S201NaGcaAc11B.1.177.810.000189
N201S201IaGcaTc11B.1.20.000009
N201S201delAGC---11B.1.20.000009
N201S201RagCagA11B.1.20.000009
N201S201IaGcaTc11B.1.214.20.0006
N201S201IaGcaTc11B.1.214.30.007143
N201S201RAgcCgc11B.1.2210.000071
N201S201HAGcCAc11B.1.2210.000071
N201S201TaGcaCc11B.1.2210.000071
N201S201NaGcaAc11B.1.221.30.000833
N201S201NaGcaAc11B.1.2320.000537
N201S201IaGcaTc11B.1.2340.000132
N201S201delAGC---11B.1.2580.000067
N201S201RAgcCgc11B.1.2580.000067
N201S201GAgcGgc11B.1.258.170.000104
N201S201IaGcaTc11B.1.2600.003344
N201S201NaGcaAc11B.1.3110.000275
N201S201GAgcGgc11B.1.3190.003049
N201S201IaGcaTc11B.1.3510.00003
N201S201SagCagT11B.1.3510.00003
N201S201NaGcaAc11B.1.360.000146
N201S201SagCagT11B.1.36.310.001751
N201S201NaGcaAc11B.1.36.360.000602
N201S201SagCagT11B.1.3620.001541
N201S201IaGcaTc11B.1.3670.000792
N201S201SagCagT11B.1.3690.000285
N201S201NaGcaAc11B.1.3690.000285
N201S201RAgcCgc11B.1.3960.000706
N201S201NaGcaAc11B.1.3990.001934
N201S201NaGcaAc11B.1.4110.003704
N201S201SagCagT11B.1.4270.00005
N201S201delAGC---11B.1.4270.00005
N201S201TaGcaCc11B.1.4290.000024
N201S201AAGcGCc11B.1.4290.000024
N201S201SagCagT11B.1.4290.000024
N201S201delAGC---11B.1.4650.003802
N201S201IaGcaTc11B.1.4680.005714
N201S201NaGcaAc11B.1.4970.000315
N201S201SagCagT11B.1.5040.03125
N201S201NaGcaAc11B.1.5170.000427
N201S201delAGC---11B.1.5250.000113
N201S201delAGC---11B.1.5440.006024
N201S201NaGcaAc11B.1.5610.000397
N201S201GAgcGgc11B.1.5610.000397
N201S201delAGC---11B.1.5760.000907
N201S201delAGC---11B.1.5960.000087
N201S201IaGcaTc11B.1.5960.000087
N201S201GAgcGgc11B.1.5960.000087
N201S201SagCagT11B.1.6090.000479
N201S201RagCagA11B.1.617.10.000129
N201S201delAGC---11B.1.617.10.000129
N201S201del1agCag-11B.1.617.20.000004
N201S201RAgcCgc11B.1.617.20.000004
N201S201IaGcaTc11B.1.6200.000946
N201S201SagCagT11B.1.6210.000089
N201S201CAgcTgc11B.1.6230.000536
N201S201SagCagT11B.1.6280.000352
N201S201CAgcTgc11B.1.90.006173
N201S201GAgcGgc11B.1.910.002075
N201S201SagCagT11B.60.00091
N201S201GAgcGgc11B.60.00091
N201S201IaGcaTc11C.350.000774
N201S201delAGC---11C.350.000774
N201S201SagCagT11C.36.30.000567
N201S201GAgcGgc11C.370.000116
N201S201delAGC---11C.37.10.002618
N201S201GAgcGgc11D.20.000075
N201S201NaGcaAc11N.50.001767
N201S201delAGC---11P.10.000016
N201S201RagCagA11P.10.000016
N201S201FAGcTTc11P.10.000016
N201S201del1agCag-11P.1.120.000484
N201S201FAGcTTc11P.1.140.000048
N201S201SagCagT11P.1.140.000048
N201S201delAGC---11P.1.140.000048
N201S201NaGcaAc11P.1.150.000232
N201S201IaGcaTc11P.1.150.000232
N201S201CAgcTgc11P.1.160.000374
N201S201del1agCag-11P.1.70.000319
N201S201delAGC---11P.1.80.004785
N201S201CAgcTgc11P.30.001595
N201S201NaGcaAc11Q.10.000126
N201S201SagCagT11Q.30.000145
N201S201SagCagT11R.10.00009
N201S201SagCagT11W.40.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.