CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 201 | S201I | nonsyn | aGc | aTc | 2946 | 2946 | 1 | 28874-28876 | |
N | 201 | S201S | syn | agC | agT | 1010 | 1009 | 0.99901 | 28874-28876 | |
N | 201 | S201S | syn | AGc | TCc | 1010 | 1 | 0.000990099 | 28874-28876 | |
N | 201 | S201G | nonsyn | Agc | Ggc | 639 | 636 | 0.995305 | 28874-28876 | |
N | 201 | S201G | nonsyn | AgC | GgA | 639 | 2 | 0.00312989 | 28874-28876 | |
N | 201 | S201G | nonsyn | AgC | GgT | 639 | 1 | 0.00156495 | 28874-28876 | |
N | 201 | S201N | nonsyn | aGc | aAc | 416 | 416 | 1 | 28874-28876 | |
N | 201 | S201C | nonsyn | Agc | Tgc | 170 | 170 | 1 | 28874-28876 | |
N | 201 | S201R | nonsyn | Agc | Cgc | 118 | 106 | 0.898305 | 28874-28876 | |
N | 201 | S201R | nonsyn | agC | agA | 118 | 12 | 0.101695 | 28874-28876 | |
N | 201 | S201del | del | AGC | --- | 64 | 64 | 1 | 28874-28876 | |
N | 201 | S201del1 | del | agC | ag- | 12 | 12 | 1 | 28874-28876 | |
N | 201 | S201T | nonsyn | aGc | aCc | 4 | 3 | 0.75 | 28874-28876 | |
N | 201 | S201del2 | del | aGC | a-- | 4 | 3 | 0.75 | 28874-28876 | |
N | 201 | S201T | nonsyn | aGC | aCA | 4 | 1 | 0.25 | 28874-28876 | |
N | 201 | S201del2 | del | AGc | --c | 4 | 1 | 0.25 | 28874-28876 | |
N | 201 | S201D | nonsyn | AGc | GAc | 3 | 3 | 1 | 28874-28876 | |
N | 201 | S201F | nonsyn | AGc | TTc | 3 | 3 | 1 | 28874-28876 | |
N | 201 | S201H | nonsyn | AGc | CAc | 2 | 2 | 1 | 28874-28876 | |
N | 201 | S201A | nonsyn | AGc | GCc | 1 | 1 | 1 | 28874-28876 | |
N | 201 | S201E | nonsyn | AGC | GAA | 1 | 1 | 1 | 28874-28876 | |
N | 201 | S201K | nonsyn | aGC | aAA | 1 | 1 | 1 | 28874-28876 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 201 | S201I | aGc | aTc | 2946 | 2946 | All | 0.000563 |
N | 201 | S201I | aGc | aTc | 1559 | 1559 | B.1.619.1 | 1 |
N | 201 | S201I | aGc | aTc | 1113 | 1113 | B.1.619 | 0.969512 |
N | 201 | S201S | agC | agT | 1009 | 1010 | All | 0.000193 |
N | 201 | S201S | AGc | TCc | 1 | 1010 | All | 0 |
N | 201 | S201G | Agc | Ggc | 636 | 639 | All | 0.000122 |
N | 201 | S201G | AgC | GgA | 2 | 639 | All | 0 |
N | 201 | S201G | AgC | GgT | 1 | 639 | All | 0 |
N | 201 | S201N | aGc | aAc | 416 | 416 | All | 0.00008 |
N | 201 | S201S | agC | agT | 392 | 392 | AY.4.2 | 0.008502 |
N | 201 | S201S | agC | agT | 192 | 193 | B.1.1.7 | 0.000172 |
N | 201 | S201S | AGc | TCc | 1 | 193 | B.1.1.7 | 0.000001 |
N | 201 | S201G | Agc | Ggc | 193 | 193 | B.1.609 | 0.092522 |
N | 201 | S201C | Agc | Tgc | 170 | 170 | All | 0.000033 |
N | 201 | S201G | Agc | Ggc | 152 | 152 | B.1.1.7 | 0.000136 |
N | 201 | S201R | Agc | Cgc | 106 | 118 | All | 0.00002 |
N | 201 | S201R | agC | agA | 12 | 118 | All | 0.000002 |
N | 201 | S201I | aGc | aTc | 111 | 111 | B.1 | 0.001017 |
N | 201 | S201G | Agc | Ggc | 95 | 95 | AY.47 | 0.002955 |
N | 201 | S201R | Agc | Cgc | 90 | 90 | AY.44 | 0.000548 |
N | 201 | S201S | agC | agT | 81 | 81 | AY.4 | 0.000126 |
N | 201 | S201del | AGC | --- | 64 | 64 | All | 0.000012 |
N | 201 | S201N | aGc | aAc | 49 | 49 | AY.101 | 0.024031 |
N | 201 | S201N | aGc | aAc | 49 | 49 | AY.44 | 0.000298 |
N | 201 | S201C | Agc | Tgc | 49 | 49 | B.1.1.7 | 0.000044 |
N | 201 | S201S | agC | agT | 49 | 49 | P.1 | 0.000772 |
N | 201 | S201S | agC | agT | 46 | 46 | AY.70 | 0.009591 |
N | 201 | S201N | aGc | aAc | 43 | 43 | B.1.596 | 0.003747 |
N | 201 | S201S | agC | agT | 31 | 31 | B.1.617.2 | 0.000117 |
N | 201 | S201G | Agc | Ggc | 30 | 30 | AY.103 | 0.000186 |
N | 201 | S201S | agC | agT | 30 | 30 | B.1.1 | 0.000544 |
N | 201 | S201S | agC | agT | 29 | 29 | AY.25 | 0.000174 |
N | 201 | S201S | agC | agT | 29 | 29 | AY.75 | 0.001625 |
N | 201 | S201N | aGc | aAc | 27 | 27 | B.1.1.7 | 0.000024 |
N | 201 | S201G | Agc | Ggc | 27 | 27 | B.1.258 | 0.001797 |
N | 201 | S201N | aGc | aAc | 25 | 25 | AY.14 | 0.0022 |
N | 201 | S201G | Agc | Ggc | 21 | 21 | B.1 | 0.000192 |
N | 201 | S201I | aGc | aTc | 21 | 21 | B.1.467 | 0.84 |
N | 201 | S201C | Agc | Tgc | 18 | 18 | B.1.258 | 0.001198 |
N | 201 | S201G | Agc | Ggc | 17 | 17 | AY.4 | 0.000026 |
N | 201 | S201N | aGc | aAc | 17 | 17 | AY.46.6 | 0.001228 |
N | 201 | S201I | aGc | aTc | 17 | 17 | B.1.521 | 0.084577 |
N | 201 | S201N | aGc | aAc | 16 | 16 | AY.4 | 0.000025 |
N | 201 | S201C | Agc | Tgc | 16 | 16 | B.1.1.58 | 0.086022 |
N | 201 | S201I | aGc | aTc | 16 | 16 | C.36 | 0.014572 |
N | 201 | S201C | Agc | Tgc | 15 | 15 | AY.4 | 0.000023 |
N | 201 | S201N | aGc | aAc | 13 | 13 | B.1.617.2 | 0.000049 |
N | 201 | S201S | agC | agT | 13 | 13 | B.1.637 | 0.00095 |
N | 201 | S201del1 | agC | ag- | 12 | 12 | All | 0.000002 |
N | 201 | S201N | aGc | aAc | 12 | 12 | AY.118 | 0.000752 |
N | 201 | S201N | aGc | aAc | 12 | 12 | AY.46.3 | 0.011204 |
N | 201 | S201N | aGc | aAc | 12 | 12 | B.1 | 0.00011 |
N | 201 | S201N | aGc | aAc | 12 | 12 | B.1.324 | 0.019262 |
N | 201 | S201C | Agc | Tgc | 11 | 11 | B.1 | 0.000101 |
N | 201 | S201del | AGC | --- | 11 | 11 | B.1 | 0.000101 |
N | 201 | S201del | AGC | --- | 11 | 11 | B.1.1.7 | 0.00001 |
N | 201 | S201G | Agc | Ggc | 11 | 11 | B.1.160 | 0.000343 |
N | 201 | S201S | agC | agT | 10 | 10 | AY.103 | 0.000062 |
N | 201 | S201C | Agc | Tgc | 10 | 10 | AY.3 | 0.000099 |
N | 201 | S201I | aGc | aTc | 10 | 10 | AY.4 | 0.000016 |
N | 201 | S201I | aGc | aTc | 8 | 8 | AY.4.2 | 0.000174 |
N | 201 | S201N | aGc | aAc | 8 | 8 | B.1.1 | 0.000145 |
N | 201 | S201S | agC | agT | 7 | 7 | AY.43 | 0.000031 |
N | 201 | S201I | aGc | aTc | 7 | 7 | AY.44 | 0.000043 |
N | 201 | S201N | aGc | aAc | 7 | 7 | B.1.1.519 | 0.000278 |
N | 201 | S201S | agC | agT | 7 | 7 | B.1.2 | 0.000062 |
N | 201 | S201N | aGc | aAc | 7 | 7 | B.1.351 | 0.000208 |
N | 201 | S201N | aGc | aAc | 7 | 7 | B.1.429 | 0.000165 |
N | 201 | S201G | Agc | Ggc | 7 | 7 | B.1.621 | 0.00062 |
N | 201 | S201C | Agc | Tgc | 6 | 6 | AY.25 | 0.000036 |
N | 201 | S201N | aGc | aAc | 6 | 6 | AY.3 | 0.00006 |
N | 201 | S201G | Agc | Ggc | 6 | 6 | AY.4.4 | 0.002455 |
N | 201 | S201I | aGc | aTc | 6 | 6 | AY.43 | 0.000027 |
N | 201 | S201I | aGc | aTc | 6 | 6 | B.1.1.434 | 0.002091 |
N | 201 | S201G | Agc | Ggc | 6 | 6 | B.1.2 | 0.000053 |
N | 201 | S201N | aGc | aAc | 6 | 6 | B.1.243 | 0.000418 |
N | 201 | S201G | Agc | Ggc | 6 | 6 | B.1.617.2 | 0.000023 |
N | 201 | S201G | Agc | Ggc | 6 | 6 | P.1.10 | 0.001617 |
N | 201 | S201S | agC | agT | 5 | 5 | B.1.1.519 | 0.000199 |
N | 201 | S201C | Agc | Tgc | 5 | 5 | B.1.2 | 0.000044 |
N | 201 | S201N | aGc | aAc | 5 | 5 | B.1.526 | 0.000118 |
N | 201 | S201del | AGC | --- | 5 | 5 | D.2 | 0.000375 |
N | 201 | S201I | aGc | aTc | 5 | 5 | P.1 | 0.000079 |
N | 201 | S201del2 | aGC | a-- | 3 | 4 | All | 0.000001 |
N | 201 | S201T | aGc | aCc | 3 | 4 | All | 0.000001 |
N | 201 | S201del2 | AGc | --c | 1 | 4 | All | 0 |
N | 201 | S201T | aGC | aCA | 1 | 4 | All | 0 |
N | 201 | S201N | aGc | aAc | 4 | 4 | AY.25 | 0.000024 |
N | 201 | S201S | agC | agT | 4 | 4 | AY.3 | 0.00004 |
N | 201 | S201N | aGc | aAc | 4 | 4 | AY.39 | 0.000099 |
N | 201 | S201S | agC | agT | 4 | 4 | AY.44 | 0.000024 |
N | 201 | S201G | Agc | Ggc | 3 | 4 | AY.44 | 0.000018 |
N | 201 | S201G | AgC | GgA | 1 | 4 | AY.44 | 0.000006 |
N | 201 | S201N | aGc | aAc | 4 | 4 | AY.98 | 0.000316 |
N | 201 | S201I | aGc | aTc | 4 | 4 | B | 0.000511 |
N | 201 | S201I | aGc | aTc | 4 | 4 | B.1.1.37 | 0.000771 |
N | 201 | S201N | aGc | aAc | 4 | 4 | B.1.2 | 0.000035 |
N | 201 | S201S | agC | agT | 4 | 4 | B.1.210 | 0.008529 |
N | 201 | S201C | Agc | Tgc | 4 | 4 | B.1.429 | 0.000094 |
N | 201 | S201N | aGc | aAc | 4 | 4 | B.1.466.2 | 0.001565 |
N | 201 | S201I | aGc | aTc | 4 | 4 | B.1.617.2 | 0.000015 |
N | 201 | S201C | Agc | Tgc | 4 | 4 | B.1.617.2 | 0.000015 |
N | 201 | S201del | AGC | --- | 4 | 4 | B.1.617.2 | 0.000015 |
N | 201 | S201I | aGc | aTc | 4 | 4 | C.26 | 0.029412 |
N | 201 | S201del1 | agC | ag- | 4 | 4 | P.1 | 0.000063 |
N | 201 | S201del1 | agC | ag- | 4 | 4 | P.1.14 | 0.000191 |
N | 201 | S201S | agC | agT | 4 | 4 | P.1.7 | 0.001277 |
N | 201 | S201D | AGc | GAc | 3 | 3 | 0.166667 | |
N | 201 | S201S | agC | agT | 3 | 3 | AD.2 | 0.000657 |
N | 201 | S201D | AGc | GAc | 3 | 3 | All | 0.000001 |
N | 201 | S201F | AGc | TTc | 3 | 3 | All | 0.000001 |
N | 201 | S201S | agC | agT | 3 | 3 | AY.100 | 0.000138 |
N | 201 | S201G | Agc | Ggc | 3 | 3 | AY.113 | 0.000427 |
N | 201 | S201S | agC | agT | 3 | 3 | AY.12 | 0.000948 |
N | 201 | S201G | Agc | Ggc | 3 | 3 | AY.2 | 0.001068 |
N | 201 | S201I | aGc | aTc | 3 | 3 | AY.20 | 0.000117 |
N | 201 | S201S | agC | agT | 3 | 3 | AY.26 | 0.000085 |
N | 201 | S201G | Agc | Ggc | 3 | 3 | AY.42 | 0.000121 |
N | 201 | S201I | aGc | aTc | 3 | 3 | AY.5 | 0.000062 |
N | 201 | S201S | agC | agT | 3 | 3 | AY.61 | 0.000314 |
N | 201 | S201N | aGc | aAc | 3 | 3 | AY.70 | 0.000626 |
N | 201 | S201N | aGc | aAc | 3 | 3 | AY.9.2 | 0.00011 |
N | 201 | S201S | agC | agT | 3 | 3 | B.1 | 0.000027 |
N | 201 | S201C | Agc | Tgc | 3 | 3 | B.1.1 | 0.000054 |
N | 201 | S201S | agC | agT | 3 | 3 | B.1.1.70 | 0.001023 |
N | 201 | S201I | aGc | aTc | 3 | 3 | B.1.427 | 0.000151 |
N | 201 | S201R | Agc | Cgc | 3 | 3 | B.1.530 | 0.021429 |
N | 201 | S201C | Agc | Tgc | 3 | 3 | B.1.637 | 0.000219 |
N | 201 | S201C | Agc | Tgc | 3 | 3 | P.1 | 0.000047 |
N | 201 | S201N | aGc | aAc | 3 | 3 | P.1 | 0.000047 |
N | 201 | S201N | aGc | aAc | 2 | 2 | 0.111111 | |
N | 201 | S201G | AgC | GgA | 1 | 2 | 0.055556 | |
N | 201 | S201R | agC | agA | 1 | 2 | 0.055556 | |
N | 201 | S201G | Agc | Ggc | 1 | 2 | 0.055556 | |
N | 201 | S201R | Agc | Cgc | 1 | 2 | 0.055556 | |
N | 201 | S201G | Agc | Ggc | 2 | 2 | A | 0.000774 |
N | 201 | S201H | AGc | CAc | 2 | 2 | All | 0 |
N | 201 | S201del | AGC | --- | 2 | 2 | AY.100 | 0.000092 |
N | 201 | S201I | aGc | aTc | 2 | 2 | AY.100 | 0.000092 |
N | 201 | S201N | aGc | aAc | 2 | 2 | AY.103 | 0.000012 |
N | 201 | S201N | aGc | aAc | 2 | 2 | AY.119 | 0.000071 |
N | 201 | S201C | Agc | Tgc | 2 | 2 | AY.120 | 0.000074 |
N | 201 | S201C | Agc | Tgc | 2 | 2 | AY.20 | 0.000078 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | AY.20 | 0.000078 |
N | 201 | S201R | Agc | Cgc | 1 | 2 | AY.25 | 0.000006 |
N | 201 | S201R | agC | agA | 1 | 2 | AY.25 | 0.000006 |
N | 201 | S201I | aGc | aTc | 2 | 2 | AY.26 | 0.000057 |
N | 201 | S201R | agC | agA | 2 | 2 | AY.27 | 0.000129 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | AY.29 | 0.000032 |
N | 201 | S201S | agC | agT | 2 | 2 | AY.29 | 0.000032 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | AY.3 | 0.00002 |
N | 201 | S201S | agC | agT | 2 | 2 | AY.3.1 | 0.000171 |
N | 201 | S201del | AGC | --- | 2 | 2 | AY.4 | 0.000003 |
N | 201 | S201del | AGC | --- | 2 | 2 | AY.40 | 0.001929 |
N | 201 | S201C | Agc | Tgc | 2 | 2 | AY.43 | 0.000009 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | AY.43 | 0.000009 |
N | 201 | S201S | agC | agT | 2 | 2 | AY.46.4 | 0.000329 |
N | 201 | S201S | agC | agT | 2 | 2 | AY.47 | 0.000062 |
N | 201 | S201del | AGC | --- | 2 | 2 | AY.50 | 0.001599 |
N | 201 | S201N | aGc | aAc | 2 | 2 | AY.61 | 0.00021 |
N | 201 | S201I | aGc | aTc | 2 | 2 | AY.69 | 0.000373 |
N | 201 | S201del | AGC | --- | 2 | 2 | AY.75 | 0.000112 |
N | 201 | S201I | aGc | aTc | 2 | 2 | AY.9.1 | 0.000167 |
N | 201 | S201S | agC | agT | 2 | 2 | AY.98.1 | 0.000097 |
N | 201 | S201R | Agc | Cgc | 1 | 2 | B.1 | 0.000009 |
N | 201 | S201R | agC | agA | 1 | 2 | B.1 | 0.000009 |
N | 201 | S201I | aGc | aTc | 2 | 2 | B.1.1 | 0.000036 |
N | 201 | S201S | agC | agT | 2 | 2 | B.1.1.214 | 0.000111 |
N | 201 | S201N | aGc | aAc | 2 | 2 | B.1.1.306 | 0.000877 |
N | 201 | S201S | agC | agT | 2 | 2 | B.1.1.362 | 0.011236 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | B.1.1.519 | 0.000079 |
N | 201 | S201N | aGc | aAc | 2 | 2 | B.1.1.63 | 0.000772 |
N | 201 | S201R | agC | agA | 1 | 2 | B.1.1.7 | 0.000001 |
N | 201 | S201R | Agc | Cgc | 1 | 2 | B.1.1.7 | 0.000001 |
N | 201 | S201N | aGc | aAc | 2 | 2 | B.1.177 | 0.000026 |
N | 201 | S201N | aGc | aAc | 2 | 2 | B.1.177.57 | 0.000562 |
N | 201 | S201N | aGc | aAc | 2 | 2 | B.1.221 | 0.000142 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | B.1.243 | 0.000139 |
N | 201 | S201N | aGc | aAc | 2 | 2 | B.1.258 | 0.000133 |
N | 201 | S201del | AGC | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | B.1.36 | 0.000292 |
N | 201 | S201S | agC | agT | 2 | 2 | B.1.36.18 | 0.00084 |
N | 201 | S201S | agC | agT | 2 | 2 | B.1.36.29 | 0.001035 |
N | 201 | S201I | aGc | aTc | 2 | 2 | B.1.395 | 0.014085 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | B.1.398 | 0.005952 |
N | 201 | S201C | Agc | Tgc | 2 | 2 | B.1.427 | 0.000101 |
N | 201 | S201R | agC | agA | 2 | 2 | B.1.427 | 0.000101 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | B.1.429 | 0.000047 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | B.1.526 | 0.000047 |
N | 201 | S201I | aGc | aTc | 2 | 2 | B.1.609 | 0.000959 |
N | 201 | S201del2 | aGC | a-- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | B.1.618 | 0.008065 |
N | 201 | S201S | agC | agT | 2 | 2 | B.40 | 0.000729 |
N | 201 | S201G | Agc | Ggc | 2 | 2 | P.1 | 0.000032 |
N | 201 | S201S | agC | agT | 2 | 2 | P.1.12 | 0.000968 |
N | 201 | S201S | agC | agT | 2 | 2 | P.2 | 0.000373 |
N | 201 | S201C | Agc | Tgc | 2 | 2 | Q.8 | 0.00033 |
N | 201 | S201K | aGC | aAA | 1 | 1 | 0.055556 | |
N | 201 | S201I | aGc | aTc | 1 | 1 | 0.055556 | |
N | 201 | S201H | AGc | CAc | 1 | 1 | 0.055556 | |
N | 201 | S201E | AGC | GAA | 1 | 1 | 0.055556 | |
N | 201 | S201I | aGc | aTc | 1 | 1 | A.1 | 0.000282 |
N | 201 | S201S | agC | agT | 1 | 1 | A.23.1 | 0.000704 |
N | 201 | S201R | agC | agA | 1 | 1 | A.27 | 0.001656 |
N | 201 | S201E | AGC | GAA | 1 | 1 | All | 0 |
N | 201 | S201A | AGc | GCc | 1 | 1 | All | 0 |
N | 201 | S201K | aGC | aAA | 1 | 1 | All | 0 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.100 | 0.000046 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | AY.100 | 0.000046 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.102 | 0.000027 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.102 | 0.000027 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.108 | 0.001103 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.110 | 0.000113 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.116 | 0.000287 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.117 | 0.000085 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.119 | 0.000035 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.120 | 0.000037 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | AY.120 | 0.000037 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.14 | 0.000088 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.19 | 0.00114 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.20 | 0.000039 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.23 | 0.00007 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | AY.23 | 0.00007 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.26 | 0.000028 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.29 | 0.000016 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | AY.29 | 0.000016 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | AY.30 | 0.000396 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.30 | 0.000396 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | AY.33 | 0.000067 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.37 | 0.000316 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.39.1 | 0.00004 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.39.1 | 0.00004 |
N | 201 | S201T | aGC | aCA | 1 | 1 | AY.4 | 0.000002 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | AY.4 | 0.000002 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.4.1 | 0.000737 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.4.2 | 0.000022 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.4.5 | 0.000107 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | AY.4.5 | 0.000107 |
N | 201 | S201del | AGC | --- | 1 | 1 | AY.43 | 0.000004 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | AY.43 | 0.000004 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.43 | 0.000004 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.45 | 0.000122 |
N | 201 | S201del | AGC | --- | 1 | 1 | AY.46 | 0.000104 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.46.6 | 0.000072 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.47 | 0.000031 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.5 | 0.000021 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.53 | 0.000288 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AY.54 | 0.000095 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.6 | 0.000041 |
N | 201 | S201del | AGC | --- | 1 | 1 | AY.65 | 0.000533 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.69 | 0.000187 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.7 | 0.000196 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.7 | 0.000196 |
N | 201 | S201del | AGC | --- | 1 | 1 | AY.71 | 0.000475 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.74 | 0.000116 |
N | 201 | S201N | aGc | aAc | 1 | 1 | AY.87 | 0.000833 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.9.2 | 0.000037 |
N | 201 | S201del | AGC | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 201 | S201S | agC | agT | 1 | 1 | AY.91.1 | 0.004065 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | AY.98 | 0.000079 |
N | 201 | S201I | aGc | aTc | 1 | 1 | AZ.2 | 0.000821 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B | 0.000128 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.1.1.222 | 0.000204 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.1.222 | 0.000204 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | B.1.1.28 | 0.000311 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.1.303 | 0.002762 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.1.348 | 0.000796 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | B.1.1.416 | 0.000905 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.1.432 | 0.001266 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | B.1.1.50 | 0.000679 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.1.526 | 0.003546 |
N | 201 | S201F | AGc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 201 | S201del2 | aGC | a-- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 201 | S201del1 | agC | ag- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.1.70 | 0.000341 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.110 | 0.004525 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.139 | 0.000733 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.160 | 0.000031 |
N | 201 | S201T | aGc | aCc | 1 | 1 | B.1.160 | 0.000031 |
N | 201 | S201del2 | AGc | --c | 1 | 1 | B.1.177 | 0.000013 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | B.1.177 | 0.000013 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.177 | 0.000013 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.177 | 0.000013 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.177.21 | 0.000076 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.177.32 | 0.00135 |
N | 201 | S201G | AgC | GgT | 1 | 1 | B.1.177.63 | 0.002703 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.1.177.7 | 0.000165 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.177.81 | 0.000189 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.2 | 0.000009 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 201 | S201R | agC | agA | 1 | 1 | B.1.2 | 0.000009 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.214.2 | 0.0006 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.214.3 | 0.007143 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | B.1.221 | 0.000071 |
N | 201 | S201H | AGc | CAc | 1 | 1 | B.1.221 | 0.000071 |
N | 201 | S201T | aGc | aCc | 1 | 1 | B.1.221 | 0.000071 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.221.3 | 0.000833 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.232 | 0.000537 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.234 | 0.000132 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.258 | 0.000067 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | B.1.258 | 0.000067 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.1.258.17 | 0.000104 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.260 | 0.003344 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.311 | 0.000275 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.1.319 | 0.003049 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.351 | 0.00003 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.351 | 0.00003 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.36 | 0.000146 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.36.31 | 0.001751 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.36.36 | 0.000602 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.362 | 0.001541 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.367 | 0.000792 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.369 | 0.000285 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.369 | 0.000285 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | B.1.396 | 0.000706 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.399 | 0.001934 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.411 | 0.003704 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.427 | 0.00005 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 201 | S201T | aGc | aCc | 1 | 1 | B.1.429 | 0.000024 |
N | 201 | S201A | AGc | GCc | 1 | 1 | B.1.429 | 0.000024 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.429 | 0.000024 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.468 | 0.005714 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.497 | 0.000315 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.504 | 0.03125 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.517 | 0.000427 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.544 | 0.006024 |
N | 201 | S201N | aGc | aAc | 1 | 1 | B.1.561 | 0.000397 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.1.561 | 0.000397 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.576 | 0.000907 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.596 | 0.000087 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.1.596 | 0.000087 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.609 | 0.000479 |
N | 201 | S201R | agC | agA | 1 | 1 | B.1.617.1 | 0.000129 |
N | 201 | S201del | AGC | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 201 | S201del1 | agC | ag- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 201 | S201R | Agc | Cgc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 201 | S201I | aGc | aTc | 1 | 1 | B.1.620 | 0.000946 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.621 | 0.000089 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | B.1.623 | 0.000536 |
N | 201 | S201S | agC | agT | 1 | 1 | B.1.628 | 0.000352 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | B.1.9 | 0.006173 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.1.91 | 0.002075 |
N | 201 | S201S | agC | agT | 1 | 1 | B.6 | 0.00091 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | B.6 | 0.00091 |
N | 201 | S201I | aGc | aTc | 1 | 1 | C.35 | 0.000774 |
N | 201 | S201del | AGC | --- | 1 | 1 | C.35 | 0.000774 |
N | 201 | S201S | agC | agT | 1 | 1 | C.36.3 | 0.000567 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | C.37 | 0.000116 |
N | 201 | S201del | AGC | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 201 | S201G | Agc | Ggc | 1 | 1 | D.2 | 0.000075 |
N | 201 | S201N | aGc | aAc | 1 | 1 | N.5 | 0.001767 |
N | 201 | S201del | AGC | --- | 1 | 1 | P.1 | 0.000016 |
N | 201 | S201R | agC | agA | 1 | 1 | P.1 | 0.000016 |
N | 201 | S201F | AGc | TTc | 1 | 1 | P.1 | 0.000016 |
N | 201 | S201del1 | agC | ag- | 1 | 1 | P.1.12 | 0.000484 |
N | 201 | S201F | AGc | TTc | 1 | 1 | P.1.14 | 0.000048 |
N | 201 | S201S | agC | agT | 1 | 1 | P.1.14 | 0.000048 |
N | 201 | S201del | AGC | --- | 1 | 1 | P.1.14 | 0.000048 |
N | 201 | S201N | aGc | aAc | 1 | 1 | P.1.15 | 0.000232 |
N | 201 | S201I | aGc | aTc | 1 | 1 | P.1.15 | 0.000232 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | P.1.16 | 0.000374 |
N | 201 | S201del1 | agC | ag- | 1 | 1 | P.1.7 | 0.000319 |
N | 201 | S201del | AGC | --- | 1 | 1 | P.1.8 | 0.004785 |
N | 201 | S201C | Agc | Tgc | 1 | 1 | P.3 | 0.001595 |
N | 201 | S201N | aGc | aAc | 1 | 1 | Q.1 | 0.000126 |
N | 201 | S201S | agC | agT | 1 | 1 | Q.3 | 0.000145 |
N | 201 | S201S | agC | agT | 1 | 1 | R.1 | 0.00009 |
N | 201 | S201S | agC | agT | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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