CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 2

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N2S2YnonsyntCttAt10993109760.99845428277-28279
N2S2YnonsyntCTtAC10993170.0015464428277-28279
N2S2PnonsynTctCct237423560.99241828277-28279
N2S2PnonsynTcTCcC2374120.0050547628277-28279
N2S2PnonsynTcTCcA237450.0021061528277-28279
N2S2PnonsynTcTCcG237410.0004212328277-28279
N2S2FnonsyntCttTt8077950.9851328277-28279
N2S2FnonsyntCTtTC807120.014869928277-28279
N2S2SsyntcTtcC1351020.75555628277-28279
N2S2SsyntcTtcA135310.2296328277-28279
N2S2SsyntcTtcG13520.014814828277-28279
N2S2TnonsynTctAct110890.80909128277-28279
N2S2TnonsynTcTAcA110210.19090928277-28279
N2S2AnonsynTctGct1061050.99056628277-28279
N2S2AnonsynTcTGcC10610.0094339628277-28279
N2S2NnonsynTCtAAt95900.94736828277-28279
N2S2NnonsynTCTAAC9550.052631628277-28279
N2S2LnonsynTCTCTA91420.46153828277-28279
N2S2LnonsynTCtCTt91310.34065928277-28279
N2S2LnonsynTCTCTC91130.14285728277-28279
N2S2LnonsynTCTCTG9140.04395628277-28279
N2S2LnonsyntCTtTG9110.01098928277-28279
N2S2InonsynTCtATt57390.68421128277-28279
N2S2InonsynTCTATA57180.31578928277-28279
N2S2XnonsyntCTtAA2323128277-28279
N2S2del1delTct-ct1570.46666728277-28279
N2S2del1deltcTtc-1530.228277-28279
N2S2del1delTCT-TG1530.228277-28279
N2S2del1deltCtt-t1520.13333328277-28279
N2S2deldelTCT---1111128277-28279
N2S2QnonsynTCTCAA640.66666728277-28279
N2S2QnonsynTCTCAG620.33333328277-28279
N2S2KnonsynTCTAAA320.66666728277-28279
N2S2KnonsynTCTAAG310.33333328277-28279
N2S2VnonsynTCtGTt310.33333328277-28279
N2S2VnonsynTCTGTC310.33333328277-28279
N2S2VnonsynTCTGTA310.33333328277-28279
N2S2CnonsyntCttGt22128277-28279
N2S2EnonsynTCTGAA22128277-28279
N2S2del2delTCt--t22128277-28279
N2S2HnonsynTCTCAC22128277-28279

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N2S2YtCttAt1097610993All0.002099
N2S2YtCTtAC1710993All0.000003
N2S2YtCttAt84918493B.1.5250.960846
N2S2YtCTtAC28493B.1.5250.000226
N2S2PTctCct23562374All0.000451
N2S2PTcTCcC122374All0.000002
N2S2PTcTCcA52374All0.000001
N2S2PTcTCcG12374All0
N2S2PTctCct18271827B.1.36.290.945163
N2S2YtCttAt11911191B.1.1.3480.948248
N2S2FtCttTt795807All0.000152
N2S2FtCTtTC12807All0.000002
N2S2YtCttAt617617B.1.177.810.116812
N2S2FtCttTt314324B.1.1.70.000281
N2S2FtCTtTC10324B.1.1.70.000009
N2S2PTctCct214214B.10.00196
N2S2YtCttAt191191A.23.10.134507
N2S2YtCttAt155155B.1.10.002812
N2S2StcTtcC102135All0.00002
N2S2StcTtcA31135All0.000006
N2S2StcTtcG2135All0
N2S2FtCttTt134134B.1.1.700.045703
N2S2TTctAct89110All0.000017
N2S2TTcTAcA21110All0.000004
N2S2ATctGct105106All0.00002
N2S2ATcTGcC1106All0
N2S2NTCtAAt9095All0.000017
N2S2NTCTAAC595All0.000001
N2S2LTCTCTA4291All0.000008
N2S2LTCtCTt3191All0.000006
N2S2LTCTCTC1391All0.000002
N2S2LTCTCTG491All0.000001
N2S2LtCTtTG191All0
N2S2TTctAct7586P.10.001182
N2S2TTcTAcA1186P.10.000173
N2S2FtCttTt8181C.110.861702
N2S2YtCttAt6777P.10.001056
N2S2YtCTtAC1077P.10.000158
N2S2NTCtAAt7476P.10.001166
N2S2NTCTAAC276P.10.000032
N2S2YtCttAt7070B.10.000641
N2S2ITCtATt3957All0.000007
N2S2ITCTATA1857All0.000003
N2S2PTctCct4355B.1.1.70.000038
N2S2PTcTCcC1255B.1.1.70.000011
N2S2LTCtCTt2745B.1.1.70.000024
N2S2LTCTCTC1345B.1.1.70.000012
N2S2LTCTCTA445B.1.1.70.000004
N2S2LTCTCTG145B.1.1.70.000001
N2S2ITCtATt2843P.10.000441
N2S2ITCTATA1543P.10.000236
N2S2ATctGct4242P.10.000662
N2S2FtCttTt4141B.1.1.3220.359649
N2S2FtCttTt4040B.10.000366
N2S2FtCttTt2929B.1.5650.023501
N2S2LTCTCTA2828P.10.000441
N2S2FtCttTt2525B.1.10.000454
N2S2YtCttAt2525B.1.1770.000329
N2S2PTctCct2525B.1.36.170.012352
N2S2XtCTtAA2323All0.000004
N2S2StcTtcC2222B.1.4290.000518
N2S2StcTtcC1821B.1.1.70.000016
N2S2StcTtcA321B.1.1.70.000003
N2S2PTctCct2020B.1.10.000363
N2S2FtCttTt2020B.1.20.000176
N2S2YtCttAt2020B.1.20.000176
N2S2PTctCct2020B.1.466.20.007825
N2S2FtCttTt1919B.1.2430.001322
N2S2PTctCct1919B.1.360.002772
N2S2ATctGct1818P.1.120.008712
N2S2ATctGct1717P.1.170.00275
N2S2PTctCct1616B.1.1.3170.006587
N2S2XtCTtAA1616P.10.000252
N2S2del1Tct-ct715All0.000001
N2S2del1tcTtc-315All0.000001
N2S2del1TCT-TG315All0.000001
N2S2del1tCtt-t215All0
N2S2YtCttAt1414AY.40.000022
N2S2PTctCct1212B.1.2600.040134
N2S2delTCT---1111All0.000002
N2S2FtCttTt1111AY.40.000017
N2S2YtCttAt1111B.1.1.3070.027848
N2S2PTctCct1010B.1.1.3540.04386
N2S2PTctCct1010B.1.4620.072464
N2S2StcTtcC99B.10.000082
N2S2YtCttAt99B.1.1.70.000008
N2S2StcTtcA78AY.330.000467
N2S2StcTtcC18AY.330.000067
N2S2FtCttTt88B.1.1.1890.012103
N2S2TTcTAcA78P.1.120.003388
N2S2TTctAct18P.1.120.000484
N2S2YtCttAt77AY.1030.000043
N2S2PTctCct77AY.200.000272
N2S2StcTtcC77AY.40.000011
N2S2YtCttAt77B.1.1.10.002287
N2S2PTctCct77B.1.2470.104478
N2S2StcTtcC77B.1.3960.00494
N2S2StcTtcA77B.1.6350.122807
N2S2FtCttTt77P.10.00011
N2S2StcTtcC67P.10.000095
N2S2StcTtcA17P.10.000016
N2S2QTCTCAA46All0.000001
N2S2QTCTCAG26All0
N2S2YtCttAt66B0.000767
N2S2PTctCct66B.1.1.1570.005479
N2S2PTctCct66B.1.177.20.027273
N2S2PTctCct66B.1.2340.000792
N2S2ATctGct66B.1.36.290.003104
N2S2ITCtATt66P.1.120.002904
N2S2LTCTCTA66P.1.120.002904
N2S2NTCtAAt66P.1.40.005859
N2S2TTctAct66P.1.40.005859
N2S2YtCttAt66P.1.40.005859
N2S2PTctCct55AY.40.000008
N2S2PTctCct55B0.000639
N2S2YtCttAt55B.1.177.500.023474
N2S2PTctCct55B.1.36.100.023923
N2S2PTctCct55B.1.4560.01634
N2S2PTctCct55B.1.4650.019011
N2S2PTctCct55B.1.617.20.000019
N2S2QTCTCAA35P.10.000047
N2S2QTCTCAG25P.10.000032
N2S2ITCtATt45P.1.170.000647
N2S2ITCTATA15P.1.170.000162
N2S2YtCttAt44B.1.3510.000119
N2S2StcTtcC44B.1.360.000584
N2S2FtCttTt44B.1.5260.000094
N2S2PTctCct44B.1.617.10.000516
N2S2PTcTCcA44P.10.000063
N2S2ATctGct44P.1.100.001078
N2S2NTCtAAt44P.1.120.001936
N2S2StcTtcC44Q.10.000505
N2S2KTCTAAA23All0
N2S2KTCTAAG13All0
N2S2VTCTGTA13All0
N2S2VTCTGTC13All0
N2S2VTCtGTt13All0
N2S2PTctCct33AY.30.00003
N2S2PTctCct33AY.430.000013
N2S2YtCttAt33AY.620.001307
N2S2PTctCct33AY.680.000821
N2S2StcTtcC33AY.98.10.000145
N2S2del1TCT-TG13B.10.000009
N2S2del1tCtt-t13B.10.000009
N2S2del1Tct-ct13B.10.000009
N2S2StcTtcA23B.1.10.000036
N2S2StcTtcC13B.1.10.000018
N2S2YtCttAt33B.1.1.1800.032258
N2S2FtCttTt33B.1.1.2160.002671
N2S2YtCttAt33B.1.1.2690.00406
N2S2FtCttTt33B.1.1.3060.001315
N2S2FtCttTt33B.1.1.3540.013158
N2S2YtCttAt33B.1.1.3690.001339
N2S2YtCttAt33B.1.1.3720.002066
N2S2delTCT---33B.1.1.70.000003
N2S2PTctCct33B.1.1570.008955
N2S2FtCttTt33B.1.2580.0002
N2S2YtCttAt33B.1.360.000438
N2S2FtCttTt33B.1.4290.000071
N2S2PTctCct33B.1.4600.053571
N2S2LTCTCTG13B.1.5260.000024
N2S2LTCtCTt13B.1.5260.000024
N2S2LtCTtTG13B.1.5260.000024
N2S2PTctCct33B.1.9.50.017045
N2S2YtCttAt33C.370.000348
N2S2KTCTAAA23P.10.000032
N2S2KTCTAAG13P.10.000016
N2S2ITCTATA23P.1.100.000539
N2S2ITCtATt13P.1.100.000269
N2S2TTctAct23P.1.150.000465
N2S2NTCtAAt23P.1.150.000465
N2S2YtCttAt23P.1.150.000465
N2S2NTCTAAC13P.1.150.000232
N2S2TTcTAcA13P.1.150.000232
N2S2YtCTtAC13P.1.150.000232
N2S2XtCTtAA33P.1.170.000485
N2S2TTctAct33P.1.20.003468
N2S2NTCtAAt33P.1.20.003468
N2S2YtCttAt33P.1.20.003468
N2S2ATcTGcC120.055556
N2S2FtCTtTC120.055556
N2S2ATctGct120.055556
N2S2FtCttTt120.055556
N2S2VTCTGTC120.055556
N2S2VTCtGTt120.055556
N2S2PTctCct22A0.000774
N2S2del2TCt--t22All0
N2S2HTCTCAC22All0
N2S2ETCTGAA22All0
N2S2CtCttGt22All0
N2S2FtCttTt22AY.1020.000053
N2S2FtCttTt22AY.4.20.000043
N2S2FtCttTt22AY.440.000012
N2S2StcTtcC12AY.440.000006
N2S2StcTtcA12AY.440.000006
N2S2StcTtcC22AY.46.60.000144
N2S2StcTtcC12AY.590.00053
N2S2StcTtcA12AY.590.00053
N2S2PTctCct22AY.670.000929
N2S2PTctCct22AY.75.10.000361
N2S2LTCTCTA22B0.000256
N2S2ATctGct22B.10.000018
N2S2YtCttAt22B.1.1.1740.006757
N2S2FtCttTt22B.1.1570.00597
N2S2PTctCct22B.1.1770.000026
N2S2del1tcTtc-22B.1.214.20.001199
N2S2PTctCct22B.1.2580.000133
N2S2ATctGct22B.1.3510.000059
N2S2LTCtCTt22B.1.36.290.001035
N2S2PTctCct22B.1.36.310.003503
N2S2FtCttTt22B.1.3780.013699
N2S2StcTtcA22B.1.4080.00738
N2S2del2TCt--t22B.1.5250.000226
N2S2del1tcTtc-12B.1.5250.000113
N2S2del1TCT-TG12B.1.5250.000113
N2S2PTctCct12B.1.5260.000024
N2S2PTcTCcG12B.1.5260.000024
N2S2YtCttAt22B.1.5330.019231
N2S2PTctCct22B.1.5330.019231
N2S2PTctCct22B.1.5880.00182
N2S2YtCttAt22B.1.5960.000174
N2S2YtCttAt22B.1.6090.000959
N2S2delTCT---22B.1.617.20.000008
N2S2StcTtcC22B.1.617.20.000008
N2S2YtCttAt22C.160.002121
N2S2delTCT---22P.10.000032
N2S2StcTtcA22P.1.130.001797
N2S2StcTtcA22P.1.140.000096
N2S2TTcTAcA22P.1.170.000324
N2S2NTCtAAt12P.1.170.000162
N2S2NTCTAAC12P.1.170.000162
N2S2FtCttTt22Q.20.001227
N2S2FtCttTt22Q.30.00029
N2S2StcTtcC110.055556
N2S2CtCttGt110.055556
N2S2ATctGct11A0.000387
N2S2StcTtcC11A.20.000662
N2S2PTctCct11A.2.20.001689
N2S2StcTtcC11A.2.50.000499
N2S2FtCttTt11A.240.071429
N2S2YtCttAt11AY.1000.000046
N2S2StcTtcG11AY.1030.000006
N2S2FtCttTt11AY.1030.000006
N2S2PTctCct11AY.1170.000085
N2S2YtCttAt11AY.1190.000035
N2S2ATctGct11AY.160.00038
N2S2StcTtcC11AY.200.000039
N2S2PTctCct11AY.230.00007
N2S2FtCttTt11AY.230.00007
N2S2StcTtcA11AY.30.00001
N2S2FtCttTt11AY.30.00001
N2S2YtCttAt11AY.30.00001
N2S2LTCTCTG11AY.320.000532
N2S2PTctCct11AY.340.000097
N2S2YtCttAt11AY.360.000148
N2S2YtCttAt11AY.370.000316
N2S2PTctCct11AY.390.000025
N2S2StcTtcC11AY.4.20.000022
N2S2PTctCct11AY.4.20.000022
N2S2FtCttTt11AY.430.000004
N2S2PTctCct11AY.440.000006
N2S2delTCT---11AY.440.000006
N2S2StcTtcC11AY.46.20.000635
N2S2delTCT---11AY.50.000021
N2S2FtCttTt11AY.50.000021
N2S2LTCTCTG11AY.60.000041
N2S2CtCttGt11AY.620.000436
N2S2FtCttTt11AY.9.10.000084
N2S2del1Tct-ct11B.1.10.000018
N2S2delTCT---11B.1.10.000018
N2S2FtCttTt11B.1.1.10.000327
N2S2YtCttAt11B.1.1.100.001115
N2S2YtCttAt11B.1.1.1710.003676
N2S2PTctCct11B.1.1.1890.001513
N2S2YtCttAt11B.1.1.1980.001468
N2S2FtCttTt11B.1.1.2140.000055
N2S2ATctGct11B.1.1.2160.00089
N2S2YtCttAt11B.1.1.2200.001859
N2S2YtCttAt11B.1.1.2220.000204
N2S2PTctCct11B.1.1.2220.000204
N2S2FtCttTt11B.1.1.2540.011236
N2S2FtCttTt11B.1.1.280.000311
N2S2YtCttAt11B.1.1.280.000311
N2S2PTctCct11B.1.1.280.000311
N2S2TTctAct11B.1.1.2980.000862
N2S2YtCttAt11B.1.1.3180.000302
N2S2YtCttAt11B.1.1.3260.001761
N2S2YtCttAt11B.1.1.3980.003226
N2S2PTctCct11B.1.1.4090.002833
N2S2StcTtcC11B.1.1.4130.006897
N2S2FtCttTt11B.1.1.4130.006897
N2S2YtCttAt11B.1.1.4160.000905
N2S2FtCttTt11B.1.1.4200.001006
N2S2YtCttAt11B.1.1.4420.018519
N2S2PTctCct11B.1.1.4480.002033
N2S2YtCttAt11B.1.1.4620.008621
N2S2FtCttTt11B.1.1.4870.005587
N2S2YtCttAt11B.1.1.500.000679
N2S2PTctCct11B.1.1.500.000679
N2S2YtCttAt11B.1.1.5190.00004
N2S2PTctCct11B.1.1.580.005376
N2S2YtCttAt11B.1.1.630.000386
N2S2del1TCT-TG11B.1.1.70.000001
N2S2YtCttAt11B.1.1.890.006061
N2S2FtCttTt11B.1.1.950.019608
N2S2YtCttAt11B.1.1.990.02381
N2S2FtCttTt11B.1.1600.000031
N2S2StcTtcC11B.1.160.160.000929
N2S2YtCttAt11B.1.160.320.004292
N2S2YtCttAt11B.1.1620.005025
N2S2ATctGct11B.1.1770.000013
N2S2FtCttTt11B.1.177.40.000211
N2S2StcTtcC11B.1.177.430.001477
N2S2LTCtCTt11B.1.177.630.002703
N2S2YtCttAt11B.1.177.70.000165
N2S2PTctCct11B.1.177.730.000566
N2S2StcTtcA11B.1.177.860.000183
N2S2PTctCct11B.1.177.870.000728
N2S2StcTtcC11B.1.20.000009
N2S2PTctCct11B.1.20.000009
N2S2del1tCtt-t11B.1.20.000009
N2S2StcTtcC11B.1.2060.000816
N2S2PTctCct11B.1.2140.003663
N2S2FtCttTt11B.1.214.20.0006
N2S2PTctCct11B.1.2210.000071
N2S2YtCttAt11B.1.2210.000071
N2S2StcTtcC11B.1.2210.000071
N2S2YtCttAt11B.1.230.006061
N2S2ATctGct11B.1.2430.00007
N2S2PTctCct11B.1.2430.00007
N2S2ATctGct11B.1.2470.014925
N2S2del1Tct-ct11B.1.2470.014925
N2S2YtCttAt11B.1.3110.000275
N2S2FtCttTt11B.1.3510.00003
N2S2ATctGct11B.1.351.30.000876
N2S2YtCttAt11B.1.351.30.000876
N2S2del1Tct-ct11B.1.360.000146
N2S2ATctGct11B.1.360.000146
N2S2FtCttTt11B.1.360.000146
N2S2PTctCct11B.1.36.160.001425
N2S2ATctGct11B.1.36.160.001425
N2S2FtCttTt11B.1.36.170.000494
N2S2PTctCct11B.1.36.190.009259
N2S2PTctCct11B.1.36.20.010753
N2S2PTctCct11B.1.36.220.001208
N2S2PTctCct11B.1.36.240.006173
N2S2del1Tct-ct11B.1.36.290.000517
N2S2PTctCct11B.1.36.80.001
N2S2TTctAct11B.1.3690.000285
N2S2YtCttAt11B.1.3750.00082
N2S2PTctCct11B.1.3960.000706
N2S2YtCttAt11B.1.3960.000706
N2S2PTctCct11B.1.3990.001934
N2S2StcTtcC11B.1.4240.008065
N2S2FtCttTt11B.1.4270.00005
N2S2PTctCct11B.1.4320.011236
N2S2YtCttAt11B.1.4390.005917
N2S2FtCttTt11B.1.4430.004673
N2S2ATctGct11B.1.4620.007246
N2S2PTctCct11B.1.4660.023256
N2S2YtCttAt11B.1.466.20.000391
N2S2FtCttTt11B.1.466.20.000391
N2S2del1Tct-ct11B.1.4680.005714
N2S2YtCttAt11B.1.4700.001404
N2S2PTctCct11B.1.4910.052632
N2S2StcTtcC11B.1.5070.011236
N2S2YtCTtAC11B.1.5240.001406
N2S2FtCTtTC11B.1.5250.000113
N2S2delTCT---11B.1.5250.000113
N2S2StcTtcG11B.1.5260.000024
N2S2YtCttAt11B.1.5260.000024
N2S2YtCttAt11B.1.5350.028571
N2S2PTctCct11B.1.5370.02
N2S2PTctCct11B.1.5480.035714
N2S2PTctCct11B.1.5600.00463
N2S2PTctCct11B.1.5610.000397
N2S2FtCttTt11B.1.5960.000087
N2S2StcTtcA11B.1.5960.000087
N2S2YtCttAt11B.1.5970.00463
N2S2YtCttAt11B.1.617.20.000004
N2S2del1Tct-ct11B.1.617.20.000004
N2S2PTctCct11B.1.6210.000089
N2S2PTctCct11B.4.10.018868
N2S2FtCttTt11B.400.000364
N2S2YtCttAt11B.550.00295
N2S2PTctCct11C.230.005814
N2S2FtCttTt11C.350.000774
N2S2YtCttAt11C.350.000774
N2S2ATctGct11C.370.000116
N2S2YtCttAt11C.400.027778
N2S2FtCttTt11D.20.000075
N2S2PTctCct11D.20.000075
N2S2VTCTGTA11P.10.000016
N2S2ETCTGAA11P.10.000016
N2S2XtCTtAA11P.1.100.000269
N2S2XtCTtAA11P.1.120.000484
N2S2YtCttAt11P.1.120.000484
N2S2HTCTCAC11P.1.120.000484
N2S2ATctGct11P.1.130.000898
N2S2YtCTtAC11P.1.130.000898
N2S2XtCTtAA11P.1.130.000898
N2S2NTCTAAC11P.1.140.000048
N2S2ATctGct11P.1.140.000048
N2S2LTCTCTA11P.1.140.000048
N2S2HTCTCAC11P.1.150.000232
N2S2XtCTtAA11P.1.150.000232
N2S2QTCTCAA11P.1.150.000232
N2S2YtCttAt11P.1.160.000374
N2S2YtCTtAC11P.1.170.000162
N2S2ETCTGAA11P.1.170.000162
N2S2PTcTCcA11P.1.170.000162
N2S2LTCTCTA11P.1.170.000162
N2S2YtCTtAC11P.1.70.000319
N2S2YtCttAt11P.20.000187
N2S2FtCttTt11P.20.000187
N2S2FtCttTt11Q.10.000126
N2S2FtCttTt11Q.40.000455
N2S2FtCttTt11Q.80.000165