CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 199 | P199L | nonsyn | cCa | cTa | 170868 | 170770 | 0.999426 | 28868-28870 | |
N | 199 | P199L | nonsyn | CCa | TTa | 170868 | 66 | 0.000386263 | 28868-28870 | |
N | 199 | P199L | nonsyn | cCA | cTG | 170868 | 25 | 0.000146312 | 28868-28870 | |
N | 199 | P199L | nonsyn | cCA | cTC | 170868 | 4 | 0.0000234099 | 28868-28870 | |
N | 199 | P199L | nonsyn | cCA | cTT | 170868 | 3 | 0.0000175574 | 28868-28870 | |
N | 199 | P199S | nonsyn | Cca | Tca | 6535 | 6439 | 0.98531 | 28868-28870 | |
N | 199 | P199S | nonsyn | CcA | TcC | 6535 | 71 | 0.0108646 | 28868-28870 | |
N | 199 | P199S | nonsyn | CcA | TcT | 6535 | 25 | 0.00382555 | 28868-28870 | |
N | 199 | P199P | syn | ccA | ccG | 1098 | 547 | 0.498179 | 28868-28870 | |
N | 199 | P199P | syn | ccA | ccT | 1098 | 493 | 0.448998 | 28868-28870 | |
N | 199 | P199P | syn | ccA | ccC | 1098 | 58 | 0.0528233 | 28868-28870 | |
N | 199 | P199T | nonsyn | Cca | Aca | 219 | 218 | 0.995434 | 28868-28870 | |
N | 199 | P199T | nonsyn | CcA | AcT | 219 | 1 | 0.00456621 | 28868-28870 | |
N | 199 | P199Q | nonsyn | cCa | cAa | 189 | 139 | 0.73545 | 28868-28870 | |
N | 199 | P199Q | nonsyn | cCA | cAG | 189 | 50 | 0.26455 | 28868-28870 | |
N | 199 | P199del | del | CCA | --- | 74 | 74 | 1 | 28868-28870 | |
N | 199 | P199R | nonsyn | cCa | cGa | 12 | 12 | 1 | 28868-28870 | |
N | 199 | P199del1 | del | Cca | -ca | 3 | 3 | 1 | 28868-28870 | |
N | 199 | P199I | nonsyn | CCa | ATa | 3 | 3 | 1 | 28868-28870 | |
N | 199 | P199del2 | del | CCa | --a | 3 | 2 | 0.666667 | 28868-28870 | |
N | 199 | P199del2 | del | cCA | c-- | 3 | 1 | 0.333333 | 28868-28870 | |
N | 199 | P199A | nonsyn | Cca | Gca | 2 | 2 | 1 | 28868-28870 | |
N | 199 | P199V | nonsyn | CCa | GTa | 2 | 2 | 1 | 28868-28870 | |
N | 199 | P199H | nonsyn | cCA | cAC | 2 | 1 | 0.5 | 28868-28870 | |
N | 199 | P199H | nonsyn | cCA | cAT | 2 | 1 | 0.5 | 28868-28870 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 199 | P199L | cCa | cTa | 170770 | 170868 | All | 0.032662 |
N | 199 | P199L | CCa | TTa | 66 | 170868 | All | 0.000013 |
N | 199 | P199L | cCA | cTG | 25 | 170868 | All | 0.000005 |
N | 199 | P199L | cCA | cTC | 4 | 170868 | All | 0.000001 |
N | 199 | P199L | cCA | cTT | 3 | 170868 | All | 0.000001 |
N | 199 | P199L | cCa | cTa | 110854 | 110907 | B.1.2 | 0.976111 |
N | 199 | P199L | CCa | TTa | 51 | 110907 | B.1.2 | 0.000449 |
N | 199 | P199L | cCA | cTT | 1 | 110907 | B.1.2 | 0.000009 |
N | 199 | P199L | cCA | cTC | 1 | 110907 | B.1.2 | 0.000009 |
N | 199 | P199L | cCa | cTa | 28880 | 28882 | B.1.526 | 0.678811 |
N | 199 | P199L | CCa | TTa | 2 | 28882 | B.1.526 | 0.000047 |
N | 199 | P199L | cCa | cTa | 13615 | 13646 | B.1.221 | 0.967112 |
N | 199 | P199L | cCA | cTG | 22 | 13646 | B.1.221 | 0.001563 |
N | 199 | P199L | CCa | TTa | 7 | 13646 | B.1.221 | 0.000497 |
N | 199 | P199L | cCA | cTT | 1 | 13646 | B.1.221 | 0.000071 |
N | 199 | P199L | cCA | cTC | 1 | 13646 | B.1.221 | 0.000071 |
N | 199 | P199L | cCa | cTa | 10884 | 10887 | B.1.596 | 0.948414 |
N | 199 | P199L | CCa | TTa | 3 | 10887 | B.1.596 | 0.000261 |
N | 199 | P199S | Cca | Tca | 6439 | 6535 | All | 0.001232 |
N | 199 | P199S | CcA | TcC | 71 | 6535 | All | 0.000014 |
N | 199 | P199S | CcA | TcT | 25 | 6535 | All | 0.000005 |
N | 199 | P199L | cCa | cTa | 2748 | 2752 | B.1 | 0.02517 |
N | 199 | P199L | cCA | cTG | 3 | 2752 | B.1 | 0.000027 |
N | 199 | P199L | CCa | TTa | 1 | 2752 | B.1 | 0.000009 |
N | 199 | P199S | Cca | Tca | 1857 | 1857 | B.1.1.39 | 0.946483 |
N | 199 | P199L | cCa | cTa | 1189 | 1189 | B.1.221.3 | 0.990833 |
N | 199 | P199P | ccA | ccG | 547 | 1098 | All | 0.000105 |
N | 199 | P199P | ccA | ccT | 493 | 1098 | All | 0.000094 |
N | 199 | P199P | ccA | ccC | 58 | 1098 | All | 0.000011 |
N | 199 | P199S | Cca | Tca | 743 | 743 | AY.4 | 0.001156 |
N | 199 | P199S | Cca | Tca | 470 | 565 | B.1.438.1 | 0.050413 |
N | 199 | P199S | CcA | TcC | 71 | 565 | B.1.438.1 | 0.007616 |
N | 199 | P199S | CcA | TcT | 24 | 565 | B.1.438.1 | 0.002574 |
N | 199 | P199L | cCa | cTa | 343 | 343 | B.1.221.1 | 0.997093 |
N | 199 | P199S | Cca | Tca | 310 | 310 | B.1.1.7 | 0.000278 |
N | 199 | P199S | Cca | Tca | 261 | 261 | AY.103 | 0.001621 |
N | 199 | P199S | Cca | Tca | 260 | 260 | AY.25 | 0.001564 |
N | 199 | P199S | Cca | Tca | 260 | 260 | B.1.567 | 0.866667 |
N | 199 | P199P | ccA | ccG | 246 | 247 | AY.26 | 0.006964 |
N | 199 | P199P | ccA | ccT | 1 | 247 | AY.26 | 0.000028 |
N | 199 | P199L | cCa | cTa | 246 | 246 | B.1.221.2 | 0.987952 |
N | 199 | P199L | cCa | cTa | 237 | 237 | B.1.221.4 | 0.9875 |
N | 199 | P199T | Cca | Aca | 218 | 219 | All | 0.000042 |
N | 199 | P199T | CcA | AcT | 1 | 219 | All | 0 |
N | 199 | P199S | Cca | Tca | 192 | 192 | B.1.617.2 | 0.000723 |
N | 199 | P199Q | cCa | cAa | 139 | 189 | All | 0.000027 |
N | 199 | P199Q | cCA | cAG | 50 | 189 | All | 0.00001 |
N | 199 | P199S | Cca | Tca | 148 | 148 | B.1 | 0.001356 |
N | 199 | P199S | Cca | Tca | 136 | 136 | B.1.1 | 0.002467 |
N | 199 | P199T | Cca | Aca | 105 | 105 | AY.119 | 0.003707 |
N | 199 | P199P | ccA | ccT | 105 | 105 | B.1.357 | 1 |
N | 199 | P199P | ccA | ccT | 79 | 102 | B.1.1.7 | 0.000071 |
N | 199 | P199P | ccA | ccG | 20 | 102 | B.1.1.7 | 0.000018 |
N | 199 | P199P | ccA | ccC | 3 | 102 | B.1.1.7 | 0.000003 |
N | 199 | P199S | Cca | Tca | 101 | 101 | B.1.36.18 | 0.042437 |
N | 199 | P199S | Cca | Tca | 97 | 97 | AY.43 | 0.00043 |
N | 199 | P199L | cCa | cTa | 96 | 96 | B.1.595 | 0.025052 |
N | 199 | P199S | Cca | Tca | 91 | 91 | B.1.160.8 | 0.117268 |
N | 199 | P199P | ccA | ccT | 88 | 88 | B.1.36.36 | 0.05298 |
N | 199 | P199L | cCa | cTa | 85 | 85 | B.1.617.2 | 0.00032 |
N | 199 | P199L | cCa | cTa | 82 | 82 | B.1.429 | 0.001929 |
N | 199 | P199Q | cCa | cAa | 80 | 80 | AY.44 | 0.000487 |
N | 199 | P199L | cCa | cTa | 80 | 80 | B.1.177.73 | 0.0453 |
N | 199 | P199L | cCa | cTa | 79 | 79 | AY.25 | 0.000475 |
N | 199 | P199S | Cca | Tca | 75 | 75 | AY.44 | 0.000457 |
N | 199 | P199del | CCA | --- | 74 | 74 | All | 0.000014 |
N | 199 | P199L | cCa | cTa | 68 | 68 | B.1.1.7 | 0.000061 |
N | 199 | P199S | Cca | Tca | 62 | 62 | AY.4.2 | 0.001345 |
N | 199 | P199L | cCa | cTa | 62 | 62 | B.1.382 | 0.553571 |
N | 199 | P199S | Cca | Tca | 60 | 60 | B.1.637 | 0.004384 |
N | 199 | P199L | cCa | cTa | 59 | 59 | B.1.563 | 1 |
N | 199 | P199S | Cca | Tca | 59 | 59 | B.4.7 | 0.59596 |
N | 199 | P199P | ccA | ccT | 52 | 58 | AY.25 | 0.000313 |
N | 199 | P199P | ccA | ccG | 4 | 58 | AY.25 | 0.000024 |
N | 199 | P199P | ccA | ccC | 2 | 58 | AY.25 | 0.000012 |
N | 199 | P199L | cCa | cTa | 52 | 52 | B.1.1 | 0.000943 |
N | 199 | P199L | cCa | cTa | 52 | 52 | B.60 | 0.825397 |
N | 199 | P199S | Cca | Tca | 45 | 45 | AA.8 | 1 |
N | 199 | P199P | ccA | ccG | 40 | 45 | AY.44 | 0.000243 |
N | 199 | P199P | ccA | ccT | 4 | 45 | AY.44 | 0.000024 |
N | 199 | P199P | ccA | ccC | 1 | 45 | AY.44 | 0.000006 |
N | 199 | P199L | cCa | cTa | 45 | 45 | B.1.177 | 0.000593 |
N | 199 | P199P | ccA | ccG | 36 | 44 | AY.102 | 0.000955 |
N | 199 | P199P | ccA | ccT | 4 | 44 | AY.102 | 0.000106 |
N | 199 | P199P | ccA | ccC | 4 | 44 | AY.102 | 0.000106 |
N | 199 | P199S | Cca | Tca | 44 | 44 | B.1.177 | 0.000579 |
N | 199 | P199L | cCa | cTa | 43 | 43 | AY.43 | 0.000191 |
N | 199 | P199L | cCa | cTa | 42 | 42 | AY.4 | 0.000065 |
N | 199 | P199S | Cca | Tca | 42 | 42 | B.1.234 | 0.005542 |
N | 199 | P199Q | cCA | cAG | 42 | 42 | C.35 | 0.032508 |
N | 199 | P199S | Cca | Tca | 40 | 40 | AY.26 | 0.001132 |
N | 199 | P199P | ccA | ccG | 25 | 40 | B.1.617.2 | 0.000094 |
N | 199 | P199P | ccA | ccT | 8 | 40 | B.1.617.2 | 0.00003 |
N | 199 | P199P | ccA | ccC | 7 | 40 | B.1.617.2 | 0.000026 |
N | 199 | P199P | ccA | ccT | 16 | 36 | AY.4 | 0.000025 |
N | 199 | P199P | ccA | ccG | 15 | 36 | AY.4 | 0.000023 |
N | 199 | P199P | ccA | ccC | 5 | 36 | AY.4 | 0.000008 |
N | 199 | P199S | Cca | Tca | 35 | 35 | B.1.160 | 0.001092 |
N | 199 | P199S | Cca | Tca | 34 | 34 | AY.120 | 0.001264 |
N | 199 | P199L | cCa | cTa | 34 | 34 | AY.61 | 0.003562 |
N | 199 | P199L | cCa | cTa | 34 | 34 | B | 0.004346 |
N | 199 | P199S | Cca | Tca | 33 | 33 | AY.3 | 0.000328 |
N | 199 | P199S | Cca | Tca | 33 | 33 | B.1.1.434 | 0.011502 |
N | 199 | P199L | cCa | cTa | 33 | 33 | B.1.1.524 | 0.6875 |
N | 199 | P199T | Cca | Aca | 30 | 30 | AY.4 | 0.000047 |
N | 199 | P199L | cCa | cTa | 29 | 29 | AY.75.1 | 0.005229 |
N | 199 | P199S | Cca | Tca | 28 | 28 | AY.102 | 0.000742 |
N | 199 | P199L | cCa | cTa | 27 | 27 | B.1.234 | 0.003562 |
N | 199 | P199S | Cca | Tca | 27 | 27 | B.1.427 | 0.001363 |
N | 199 | P199S | Cca | Tca | 26 | 26 | P.1 | 0.00041 |
N | 199 | P199S | Cca | Tca | 25 | 25 | C.37 | 0.002902 |
N | 199 | P199S | Cca | Tca | 24 | 24 | B.1.1.277 | 0.018209 |
N | 199 | P199P | ccA | ccT | 24 | 24 | B.1.617.1 | 0.003095 |
N | 199 | P199P | ccA | ccT | 11 | 23 | B.1 | 0.000101 |
N | 199 | P199P | ccA | ccG | 9 | 23 | B.1 | 0.000082 |
N | 199 | P199P | ccA | ccC | 3 | 23 | B.1 | 0.000027 |
N | 199 | P199L | cCa | cTa | 22 | 22 | B.1.1.335 | 0.285714 |
N | 199 | P199L | cCa | cTa | 22 | 22 | P.1 | 0.000347 |
N | 199 | P199S | Cca | Tca | 22 | 22 | P.1.13 | 0.019766 |
N | 199 | P199L | cCa | cTa | 21 | 21 | AY.44 | 0.000128 |
N | 199 | P199Q | cCa | cAa | 21 | 21 | B.1.258 | 0.001397 |
N | 199 | P199S | Cca | Tca | 21 | 21 | B.1.595 | 0.00548 |
N | 199 | P199P | ccA | ccG | 13 | 20 | AY.103 | 0.000081 |
N | 199 | P199P | ccA | ccT | 4 | 20 | AY.103 | 0.000025 |
N | 199 | P199P | ccA | ccC | 3 | 20 | AY.103 | 0.000019 |
N | 199 | P199L | cCa | cTa | 20 | 20 | AY.29 | 0.000315 |
N | 199 | P199S | Cca | Tca | 19 | 19 | AY.117 | 0.001606 |
N | 199 | P199S | Cca | Tca | 19 | 19 | B.1.1.28 | 0.005913 |
N | 199 | P199S | Cca | Tca | 18 | 18 | AY.57 | 0.011811 |
N | 199 | P199L | cCa | cTa | 18 | 18 | B.1.348 | 0.327273 |
N | 199 | P199L | cCa | cTa | 18 | 18 | B.1.580 | 0.073171 |
N | 199 | P199L | cCa | cTa | 18 | 18 | B.1.623 | 0.009657 |
N | 199 | P199L | cCa | cTa | 17 | 17 | B.1.576 | 0.015413 |
N | 199 | P199S | Cca | Tca | 17 | 17 | N.5 | 0.030035 |
N | 199 | P199T | Cca | Aca | 16 | 16 | B.1.1.7 | 0.000014 |
N | 199 | P199L | cCa | cTa | 16 | 16 | B.1.375 | 0.013115 |
N | 199 | P199P | ccA | ccT | 12 | 15 | AY.3 | 0.000119 |
N | 199 | P199P | ccA | ccC | 2 | 15 | AY.3 | 0.00002 |
N | 199 | P199P | ccA | ccG | 1 | 15 | AY.3 | 0.00001 |
N | 199 | P199P | ccA | ccG | 11 | 15 | AY.43 | 0.000049 |
N | 199 | P199P | ccA | ccT | 3 | 15 | AY.43 | 0.000013 |
N | 199 | P199P | ccA | ccC | 1 | 15 | AY.43 | 0.000004 |
N | 199 | P199L | cCa | cTa | 15 | 15 | B.1.1.519 | 0.000596 |
N | 199 | P199S | Cca | Tca | 15 | 15 | B.1.1.519 | 0.000596 |
N | 199 | P199L | cCa | cTa | 15 | 15 | B.1.311 | 0.004119 |
N | 199 | P199P | ccA | ccG | 14 | 15 | B.1.351 | 0.000416 |
N | 199 | P199P | ccA | ccC | 1 | 15 | B.1.351 | 0.00003 |
N | 199 | P199L | cCa | cTa | 15 | 15 | B.1.564 | 0.006388 |
N | 199 | P199S | Cca | Tca | 15 | 15 | B.3 | 0.012458 |
N | 199 | P199S | Cca | Tca | 14 | 14 | AQ.1 | 1 |
N | 199 | P199L | cCa | cTa | 14 | 14 | AY.103 | 0.000087 |
N | 199 | P199L | cCa | cTa | 14 | 14 | B.1.210 | 0.029851 |
N | 199 | P199Q | cCa | cAa | 12 | 13 | B.1.1 | 0.000218 |
N | 199 | P199Q | cCA | cAG | 1 | 13 | B.1.1 | 0.000018 |
N | 199 | P199S | Cca | Tca | 13 | 13 | B.1.1.161 | 0.045936 |
N | 199 | P199S | Cca | Tca | 13 | 13 | B.1.258 | 0.000865 |
N | 199 | P199L | cCa | cTa | 13 | 13 | B.1.361 | 0.016753 |
N | 199 | P199L | cCa | cTa | 13 | 13 | B.1.427 | 0.000656 |
N | 199 | P199S | Cca | Tca | 13 | 13 | B.1.429 | 0.000306 |
N | 199 | P199S | Cca | Tca | 13 | 13 | B.1.466.2 | 0.005086 |
N | 199 | P199R | cCa | cGa | 12 | 12 | All | 0.000002 |
N | 199 | P199L | cCa | cTa | 12 | 12 | B.1.1.214 | 0.000665 |
N | 199 | P199S | Cca | Tca | 12 | 12 | B.1.111 | 0.014101 |
N | 199 | P199S | Cca | Tca | 12 | 12 | B.1.206 | 0.009788 |
N | 199 | P199S | Cca | Tca | 12 | 12 | B.1.509 | 0.01039 |
N | 199 | P199S | Cca | Tca | 11 | 11 | AY.100 | 0.000506 |
N | 199 | P199S | Cca | Tca | 11 | 11 | AY.20 | 0.000428 |
N | 199 | P199S | Cca | Tca | 11 | 11 | AY.29 | 0.000174 |
N | 199 | P199del | CCA | --- | 11 | 11 | AY.6 | 0.000452 |
N | 199 | P199P | ccA | ccG | 9 | 11 | AY.98.1 | 0.000436 |
N | 199 | P199P | ccA | ccT | 2 | 11 | AY.98.1 | 0.000097 |
N | 199 | P199S | Cca | Tca | 11 | 11 | B.1.1.222 | 0.002244 |
N | 199 | P199T | Cca | Aca | 11 | 11 | B.1.617.2 | 0.000041 |
N | 199 | P199S | Cca | Tca | 11 | 11 | B.1.621 | 0.000974 |
N | 199 | P199S | Cca | Tca | 10 | 10 | A.2.5 | 0.00499 |
N | 199 | P199S | Cca | Tca | 10 | 10 | AY.119 | 0.000353 |
N | 199 | P199L | cCa | cTa | 10 | 10 | AY.3 | 0.000099 |
N | 199 | P199S | Cca | Tca | 10 | 10 | AY.7.2 | 0.005593 |
N | 199 | P199del | CCA | --- | 10 | 10 | B.1 | 0.000092 |
N | 199 | P199S | Cca | Tca | 10 | 10 | B.1.128 | 0.006353 |
N | 199 | P199L | cCa | cTa | 10 | 10 | B.1.612 | 0.026525 |
N | 199 | P199S | Cca | Tca | 9 | 9 | A.19 | 0.084906 |
N | 199 | P199S | Cca | Tca | 9 | 9 | AQ.2 | 1 |
N | 199 | P199S | Cca | Tca | 9 | 9 | AY.23 | 0.000628 |
N | 199 | P199L | cCa | cTa | 9 | 9 | AY.3.1 | 0.000767 |
N | 199 | P199S | Cca | Tca | 9 | 9 | AY.39 | 0.000222 |
N | 199 | P199del | CCA | --- | 9 | 9 | B.1.1.7 | 0.000008 |
N | 199 | P199L | cCa | cTa | 9 | 9 | B.1.160 | 0.000281 |
N | 199 | P199R | cCa | cGa | 9 | 9 | B.1.2 | 0.000079 |
N | 199 | P199L | cCa | cTa | 9 | 9 | B.1.243 | 0.000626 |
N | 199 | P199T | Cca | Aca | 9 | 9 | B.1.258 | 0.000599 |
N | 199 | P199S | Cca | Tca | 9 | 9 | B.1.258.14 | 0.008824 |
N | 199 | P199L | cCa | cTa | 9 | 9 | B.1.561 | 0.003573 |
N | 199 | P199L | cCa | cTa | 7 | 9 | B.1.567 | 0.023333 |
N | 199 | P199L | CCa | TTa | 2 | 9 | B.1.567 | 0.006667 |
N | 199 | P199T | Cca | Aca | 8 | 8 | AY.102 | 0.000212 |
N | 199 | P199P | ccA | ccC | 8 | 8 | AY.118 | 0.000501 |
N | 199 | P199S | Cca | Tca | 8 | 8 | AY.34 | 0.000776 |
N | 199 | P199S | Cca | Tca | 8 | 8 | AY.45 | 0.000973 |
N | 199 | P199S | Cca | Tca | 8 | 8 | AY.46.4 | 0.001316 |
N | 199 | P199S | Cca | Tca | 8 | 8 | AY.47 | 0.000249 |
N | 199 | P199L | cCa | cTa | 8 | 8 | AY.5 | 0.000165 |
N | 199 | P199P | ccA | ccG | 8 | 8 | AY.59 | 0.004237 |
N | 199 | P199S | Cca | Tca | 8 | 8 | AY.75.1 | 0.001442 |
N | 199 | P199S | Cca | Tca | 8 | 8 | B.1.243 | 0.000557 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.396 | 0.005646 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.621 | 0.000708 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.625 | 0.018824 |
N | 199 | P199L | cCa | cTa | 8 | 8 | B.1.78 | 0.068376 |
N | 199 | P199S | Cca | Tca | 8 | 8 | P.1.7 | 0.002554 |
N | 199 | P199P | ccA | ccG | 7 | 7 | AY.113 | 0.000997 |
N | 199 | P199S | Cca | Tca | 7 | 7 | AY.14 | 0.000616 |
N | 199 | P199L | cCa | cTa | 7 | 7 | AY.23 | 0.000488 |
N | 199 | P199P | ccA | ccG | 7 | 7 | AY.46.6 | 0.000505 |
N | 199 | P199P | ccA | ccT | 6 | 7 | AY.47 | 0.000187 |
N | 199 | P199P | ccA | ccG | 1 | 7 | AY.47 | 0.000031 |
N | 199 | P199S | Cca | Tca | 7 | 7 | AY.98.1 | 0.000339 |
N | 199 | P199Q | cCa | cAa | 5 | 7 | B.1 | 0.000046 |
N | 199 | P199Q | cCA | cAG | 2 | 7 | B.1 | 0.000018 |
N | 199 | P199S | Cca | Tca | 7 | 7 | B.1.1.1 | 0.002287 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.160.32 | 0.030043 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.177.43 | 0.01034 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.206 | 0.00571 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.36.1 | 0.007982 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.577 | 0.004811 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.628 | 0.002467 |
N | 199 | P199L | cCa | cTa | 7 | 7 | B.1.637 | 0.000512 |
N | 199 | P199L | cCa | cTa | 3 | 6 | 0.166667 | |
N | 199 | P199L | cCA | cTC | 2 | 6 | 0.111111 | |
N | 199 | P199L | cCA | cTT | 1 | 6 | 0.055556 | |
N | 199 | P199S | Cca | Tca | 6 | 6 | AY.120.1 | 0.001926 |
N | 199 | P199P | ccA | ccG | 4 | 6 | AY.46 | 0.000416 |
N | 199 | P199P | ccA | ccC | 2 | 6 | AY.46 | 0.000208 |
N | 199 | P199S | Cca | Tca | 6 | 6 | AY.46.6 | 0.000433 |
N | 199 | P199S | Cca | Tca | 6 | 6 | B | 0.000767 |
N | 199 | P199S | Cca | Tca | 6 | 6 | B.1.1.207 | 0.007092 |
N | 199 | P199L | cCa | cTa | 6 | 6 | B.1.1.412 | 0.045802 |
N | 199 | P199S | Cca | Tca | 6 | 6 | B.1.110.1 | 0.6 |
N | 199 | P199T | Cca | Aca | 6 | 6 | B.1.344 | 0.04918 |
N | 199 | P199L | cCa | cTa | 6 | 6 | B.1.369 | 0.001711 |
N | 199 | P199P | ccA | ccG | 6 | 6 | B.1.507 | 0.067416 |
N | 199 | P199S | Cca | Tca | 6 | 6 | B.40 | 0.002186 |
N | 199 | P199S | Cca | Tca | 6 | 6 | L.3 | 0.021277 |
N | 199 | P199L | cCa | cTa | 6 | 6 | P.1.12 | 0.002904 |
N | 199 | P199S | Cca | Tca | 5 | 5 | AP.1 | 0.007508 |
N | 199 | P199P | ccA | ccT | 5 | 5 | AY.117 | 0.000423 |
N | 199 | P199L | cCa | cTa | 5 | 5 | AY.13 | 0.000805 |
N | 199 | P199del | CCA | --- | 5 | 5 | AY.25 | 0.00003 |
N | 199 | P199S | Cca | Tca | 5 | 5 | AY.33 | 0.000334 |
N | 199 | P199L | cCa | cTa | 5 | 5 | AY.39 | 0.000124 |
N | 199 | P199S | Cca | Tca | 5 | 5 | AY.46 | 0.00052 |
N | 199 | P199S | Cca | Tca | 5 | 5 | AY.7 | 0.00098 |
N | 199 | P199L | cCa | cTa | 5 | 5 | AY.75 | 0.00028 |
N | 199 | P199S | Cca | Tca | 5 | 5 | AY.9.2 | 0.000184 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.1.279 | 0.005605 |
N | 199 | P199S | Cca | Tca | 5 | 5 | B.1.149 | 0.017123 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.240 | 0.001078 |
N | 199 | P199P | ccA | ccG | 3 | 5 | B.1.258 | 0.0002 |
N | 199 | P199P | ccA | ccT | 2 | 5 | B.1.258 | 0.000133 |
N | 199 | P199S | Cca | Tca | 5 | 5 | B.1.315 | 0.030303 |
N | 199 | P199S | Cca | Tca | 5 | 5 | B.1.351 | 0.000149 |
N | 199 | P199S | Cca | Tca | 5 | 5 | B.1.366 | 0.02439 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.367 | 0.003962 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.400 | 0.002145 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.462 | 0.036232 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.476 | 0.5 |
N | 199 | P199S | Cca | Tca | 5 | 5 | B.1.582 | 0.002453 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.606 | 0.03012 |
N | 199 | P199L | cCa | cTa | 5 | 5 | B.1.609 | 0.002397 |
N | 199 | P199del | CCA | --- | 5 | 5 | D.2 | 0.000375 |
N | 199 | P199P | ccA | ccG | 3 | 5 | P.1 | 0.000047 |
N | 199 | P199P | ccA | ccT | 2 | 5 | P.1 | 0.000032 |
N | 199 | P199S | Cca | Tca | 5 | 5 | P.1.14 | 0.000239 |
N | 199 | P199L | cCa | cTa | 5 | 5 | Q.1 | 0.000632 |
N | 199 | P199S | Cca | Tca | 5 | 5 | Q.8 | 0.000825 |
N | 199 | P199S | Cca | Tca | 4 | 4 | AK.1 | 0.050633 |
N | 199 | P199S | Cca | Tca | 4 | 4 | AY.116 | 0.001147 |
N | 199 | P199S | Cca | Tca | 4 | 4 | AY.12 | 0.001264 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.26 | 0.000113 |
N | 199 | P199S | Cca | Tca | 4 | 4 | AY.30 | 0.001583 |
N | 199 | P199P | ccA | ccT | 4 | 4 | AY.33 | 0.000267 |
N | 199 | P199P | ccA | ccT | 4 | 4 | AY.39 | 0.000099 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.54 | 0.000381 |
N | 199 | P199S | Cca | Tca | 4 | 4 | AY.72 | 0.005442 |
N | 199 | P199P | ccA | ccT | 3 | 4 | AY.72 | 0.004082 |
N | 199 | P199P | ccA | ccC | 1 | 4 | AY.72 | 0.001361 |
N | 199 | P199S | Cca | Tca | 4 | 4 | AY.86 | 0.00332 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.92 | 0.001149 |
N | 199 | P199L | cCa | cTa | 4 | 4 | AY.95 | 0.003044 |
N | 199 | P199S | Cca | Tca | 4 | 4 | B.1.1.294 | 0.005063 |
N | 199 | P199S | Cca | Tca | 4 | 4 | B.1.1.317 | 0.001647 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.157 | 0.01194 |
N | 199 | P199S | Cca | Tca | 4 | 4 | B.1.160.32 | 0.017167 |
N | 199 | P199P | ccA | ccG | 2 | 4 | B.1.177 | 0.000026 |
N | 199 | P199P | ccA | ccC | 1 | 4 | B.1.177 | 0.000013 |
N | 199 | P199P | ccA | ccT | 1 | 4 | B.1.177 | 0.000013 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.177.40 | 0.020619 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.177.7 | 0.000659 |
N | 199 | P199P | ccA | ccG | 4 | 4 | B.1.177.86 | 0.000734 |
N | 199 | P199S | Cca | Tca | 4 | 4 | B.1.221 | 0.000284 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.258 | 0.000266 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.258.17 | 0.000416 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.330 | 0.114286 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.349 | 0.002859 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.351 | 0.000119 |
N | 199 | P199S | Cca | Tca | 4 | 4 | B.1.36.1 | 0.004561 |
N | 199 | P199S | Cca | Tca | 4 | 4 | B.1.565 | 0.003241 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.575 | 0.001214 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.1.590 | 0.018182 |
N | 199 | P199L | cCa | cTa | 4 | 4 | B.40 | 0.001457 |
N | 199 | P199S | Cca | Tca | 4 | 4 | C.35 | 0.003096 |
N | 199 | P199T | Cca | Aca | 4 | 4 | C.37 | 0.000464 |
N | 199 | P199P | ccA | ccG | 4 | 4 | P.2 | 0.000747 |
N | 199 | P199P | ccA | ccC | 2 | 3 | 0.111111 | |
N | 199 | P199P | ccA | ccT | 1 | 3 | 0.055556 | |
N | 199 | P199P | ccA | ccG | 3 | 3 | A | 0.001161 |
N | 199 | P199I | CCa | ATa | 3 | 3 | All | 0.000001 |
N | 199 | P199del1 | Cca | -ca | 3 | 3 | All | 0.000001 |
N | 199 | P199del2 | CCa | --a | 2 | 3 | All | 0 |
N | 199 | P199del2 | cCA | c-- | 1 | 3 | All | 0 |
N | 199 | P199T | Cca | Aca | 3 | 3 | AY.113 | 0.000427 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.118 | 0.000188 |
N | 199 | P199P | ccA | ccG | 2 | 3 | AY.20 | 0.000078 |
N | 199 | P199P | ccA | ccC | 1 | 3 | AY.20 | 0.000039 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.27 | 0.000194 |
N | 199 | P199del | CCA | --- | 3 | 3 | AY.3 | 0.00003 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.3.1 | 0.000256 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.34.1 | 0.00153 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.36 | 0.000445 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.4.5 | 0.000322 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.46.1 | 0.00308 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.46.5 | 0.000595 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.5.3 | 0.001012 |
N | 199 | P199P | ccA | ccG | 3 | 3 | AY.58 | 0.002722 |
N | 199 | P199P | ccA | ccG | 3 | 3 | AY.65 | 0.001599 |
N | 199 | P199P | ccA | ccG | 3 | 3 | AY.9 | 0.000203 |
N | 199 | P199S | Cca | Tca | 3 | 3 | AY.98 | 0.000237 |
N | 199 | P199P | ccA | ccG | 2 | 3 | B.1.1 | 0.000036 |
N | 199 | P199P | ccA | ccT | 1 | 3 | B.1.1 | 0.000018 |
N | 199 | P199P | ccA | ccT | 3 | 3 | B.1.1.232 | 0.005445 |
N | 199 | P199P | ccA | ccT | 3 | 3 | B.1.1.369 | 0.001339 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.1.389 | 0.018182 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.1.406 | 0.019481 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.1.434 | 0.001046 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.1.526 | 0.010638 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.139 | 0.002199 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.284 | 0.039474 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.320 | 0.003736 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.336 | 0.007317 |
N | 199 | P199P | ccA | ccG | 2 | 3 | B.1.36 | 0.000292 |
N | 199 | P199P | ccA | ccT | 1 | 3 | B.1.36 | 0.000146 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.36.35 | 0.007812 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.396 | 0.002117 |
N | 199 | P199P | ccA | ccT | 3 | 3 | B.1.438.1 | 0.000322 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.526 | 0.000071 |
N | 199 | P199P | ccA | ccT | 3 | 3 | B.1.526 | 0.000071 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.530 | 0.021429 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.538 | 0.024194 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.565 | 0.002431 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.574 | 0.006452 |
N | 199 | P199S | Cca | Tca | 3 | 3 | B.1.620 | 0.002838 |
N | 199 | P199P | ccA | ccG | 2 | 3 | B.1.621 | 0.000177 |
N | 199 | P199P | ccA | ccC | 1 | 3 | B.1.621 | 0.000089 |
N | 199 | P199L | cCa | cTa | 3 | 3 | B.1.88.1 | 0.014423 |
N | 199 | P199T | Cca | Aca | 3 | 3 | B.4 | 0.006623 |
N | 199 | P199S | Cca | Tca | 3 | 3 | D.2 | 0.000225 |
N | 199 | P199S | Cca | Tca | 3 | 3 | P.1.1 | 0.000953 |
N | 199 | P199S | Cca | Tca | 3 | 3 | P.2 | 0.00056 |
N | 199 | P199L | cCa | cTa | 3 | 3 | P.3 | 0.004785 |
N | 199 | P199H | cCA | cAT | 1 | 2 | 0.055556 | |
N | 199 | P199H | cCA | cAC | 1 | 2 | 0.055556 | |
N | 199 | P199S | Cca | Tca | 2 | 2 | A.1 | 0.000564 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AD.1 | 0.00823 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AE.8 | 0.000978 |
N | 199 | P199A | Cca | Gca | 2 | 2 | All | 0 |
N | 199 | P199V | CCa | GTa | 2 | 2 | All | 0 |
N | 199 | P199H | cCA | cAT | 1 | 2 | All | 0 |
N | 199 | P199H | cCA | cAC | 1 | 2 | All | 0 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AU.1 | 0.002532 |
N | 199 | P199P | ccA | ccT | 2 | 2 | AY.100 | 0.000092 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.106 | 0.00067 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.120 | 0.000074 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.121 | 0.000271 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.39.1 | 0.000079 |
N | 199 | P199P | ccA | ccG | 1 | 2 | AY.39.1 | 0.00004 |
N | 199 | P199P | ccA | ccC | 1 | 2 | AY.39.1 | 0.00004 |
N | 199 | P199Q | cCa | cAa | 2 | 2 | AY.4 | 0.000003 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.4.5 | 0.000215 |
N | 199 | P199del | CCA | --- | 2 | 2 | AY.40 | 0.001929 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.42 | 0.00008 |
N | 199 | P199T | Cca | Aca | 2 | 2 | AY.43 | 0.000009 |
N | 199 | P199T | Cca | Aca | 2 | 2 | AY.44 | 0.000012 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.45 | 0.000243 |
N | 199 | P199P | ccA | ccT | 1 | 2 | AY.45 | 0.000122 |
N | 199 | P199P | ccA | ccG | 1 | 2 | AY.45 | 0.000122 |
N | 199 | P199P | ccA | ccG | 2 | 2 | AY.46.4 | 0.000329 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.47 | 0.000062 |
N | 199 | P199P | ccA | ccG | 1 | 2 | AY.5.3 | 0.000337 |
N | 199 | P199P | ccA | ccT | 1 | 2 | AY.5.3 | 0.000337 |
N | 199 | P199del | CCA | --- | 2 | 2 | AY.50 | 0.001599 |
N | 199 | P199P | ccA | ccG | 1 | 2 | AY.53 | 0.000288 |
N | 199 | P199P | ccA | ccT | 1 | 2 | AY.53 | 0.000288 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.62 | 0.000871 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.65 | 0.001066 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.66 | 0.002139 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.75 | 0.000112 |
N | 199 | P199P | ccA | ccG | 2 | 2 | AY.75.1 | 0.000361 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.9 | 0.000135 |
N | 199 | P199P | ccA | ccG | 1 | 2 | AY.9.1 | 0.000084 |
N | 199 | P199P | ccA | ccT | 1 | 2 | AY.9.1 | 0.000084 |
N | 199 | P199P | ccA | ccT | 2 | 2 | AY.94 | 0.000885 |
N | 199 | P199L | cCa | cTa | 2 | 2 | AY.96 | 0.004149 |
N | 199 | P199S | Cca | Tca | 2 | 2 | AY.99.2 | 0.000184 |
N | 199 | P199del2 | CCa | --a | 2 | 2 | B.1 | 0.000018 |
N | 199 | P199T | Cca | Aca | 2 | 2 | B.1 | 0.000018 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.1.170 | 0.002494 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.1.192 | 0.004619 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.1.210 | 0.011429 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.1.244 | 0.030769 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.1.331 | 0.023256 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.1.37 | 0.000386 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.1.464 | 0.002946 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.1.486 | 0.003155 |
N | 199 | P199P | ccA | ccG | 1 | 2 | B.1.1.519 | 0.00004 |
N | 199 | P199P | ccA | ccT | 1 | 2 | B.1.1.519 | 0.00004 |
N | 199 | P199del1 | Cca | -ca | 2 | 2 | B.1.1.7 | 0.000002 |
N | 199 | P199Q | cCa | cAa | 2 | 2 | B.1.1.7 | 0.000002 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.126 | 0.002551 |
N | 199 | P199Q | cCa | cAa | 1 | 2 | B.1.177 | 0.000013 |
N | 199 | P199Q | cCA | cAG | 1 | 2 | B.1.177 | 0.000013 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.177.12 | 0.000303 |
N | 199 | P199P | ccA | ccT | 2 | 2 | B.1.177.12 | 0.000303 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.177.31 | 0.022989 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.177.42 | 0.001789 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.177.44 | 0.001038 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.177.73 | 0.001133 |
N | 199 | P199I | CCa | ATa | 2 | 2 | B.1.2 | 0.000018 |
N | 199 | P199del | CCA | --- | 2 | 2 | B.1.2 | 0.000018 |
N | 199 | P199Q | cCa | cAa | 2 | 2 | B.1.2 | 0.000018 |
N | 199 | P199V | CCa | GTa | 2 | 2 | B.1.2 | 0.000018 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.2 | 0.000018 |
N | 199 | P199P | ccA | ccC | 1 | 2 | B.1.221 | 0.000071 |
N | 199 | P199P | ccA | ccG | 1 | 2 | B.1.221 | 0.000071 |
N | 199 | P199P | ccA | ccT | 2 | 2 | B.1.234 | 0.000264 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.264 | 0.024691 |
N | 199 | P199del | CCA | --- | 2 | 2 | B.1.351 | 0.000059 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.36.18 | 0.00084 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.362 | 0.003082 |
N | 199 | P199P | ccA | ccC | 2 | 2 | B.1.377 | 0.009132 |
N | 199 | P199P | ccA | ccC | 2 | 2 | B.1.400 | 0.000858 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.400 | 0.000858 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.404 | 0.002604 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.413 | 0.008511 |
N | 199 | P199P | ccA | ccG | 1 | 2 | B.1.427 | 0.00005 |
N | 199 | P199P | ccA | ccT | 1 | 2 | B.1.427 | 0.00005 |
N | 199 | P199P | ccA | ccT | 2 | 2 | B.1.429 | 0.000047 |
N | 199 | P199T | CcA | AcT | 1 | 2 | B.1.429 | 0.000024 |
N | 199 | P199T | Cca | Aca | 1 | 2 | B.1.429 | 0.000024 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.517 | 0.000854 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.533 | 0.019231 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.546 | 0.007407 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.561 | 0.000794 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.566 | 0.038462 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.1.589 | 0.015152 |
N | 199 | P199S | Cca | Tca | 2 | 2 | B.1.627 | 0.00404 |
N | 199 | P199P | ccA | ccG | 2 | 2 | B.1.628 | 0.000705 |
N | 199 | P199P | ccA | ccT | 2 | 2 | B.1.637 | 0.000146 |
N | 199 | P199L | cCa | cTa | 2 | 2 | B.61 | 0.011494 |
N | 199 | P199L | cCa | cTa | 2 | 2 | D.2 | 0.00015 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | 0.055556 | |
N | 199 | P199T | Cca | Aca | 1 | 1 | A | 0.000387 |
N | 199 | P199L | cCa | cTa | 1 | 1 | A | 0.000387 |
N | 199 | P199L | cCa | cTa | 1 | 1 | A.2.5.2 | 0.001572 |
N | 199 | P199S | Cca | Tca | 1 | 1 | A.21 | 0.00277 |
N | 199 | P199T | Cca | Aca | 1 | 1 | A.5 | 0.001923 |
N | 199 | P199S | Cca | Tca | 1 | 1 | A.6 | 0.005128 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AA.1 | 0.007246 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AS.1 | 0.009524 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.1 | 0.000396 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.10 | 0.00053 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.100 | 0.000046 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.102 | 0.000027 |
N | 199 | P199A | Cca | Gca | 1 | 1 | AY.103 | 0.000006 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.103 | 0.000006 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.107 | 0.000466 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.109 | 0.00074 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.113 | 0.000142 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.113 | 0.000142 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.114 | 0.000231 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.114 | 0.000231 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.116 | 0.000287 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.116 | 0.000287 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.116.1 | 0.000311 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.118 | 0.000063 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.118 | 0.000063 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.118 | 0.000063 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.119 | 0.000035 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.119 | 0.000035 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.119 | 0.000035 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.12 | 0.000316 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.12 | 0.000316 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.120 | 0.000037 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.120.1 | 0.000321 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.121 | 0.000135 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.13 | 0.000161 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.14 | 0.000088 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.16 | 0.00038 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.19 | 0.00114 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.2 | 0.000356 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.20 | 0.000039 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.20 | 0.000039 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.23.1 | 0.000417 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.24 | 0.000431 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.27 | 0.000065 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.29.1 | 0.000221 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.29.1 | 0.000221 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.3 | 0.00001 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.3 | 0.00001 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.3.1 | 0.000085 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.32 | 0.000532 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.33 | 0.000067 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.33 | 0.000067 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.34 | 0.000097 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.36 | 0.000148 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.37 | 0.000316 |
N | 199 | P199del | CCA | --- | 1 | 1 | AY.39 | 0.000025 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.39.1 | 0.00004 |
N | 199 | P199R | cCa | cGa | 1 | 1 | AY.4 | 0.000002 |
N | 199 | P199del | CCA | --- | 1 | 1 | AY.4 | 0.000002 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.4.1 | 0.000737 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.4.2 | 0.000022 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.4.2 | 0.000022 |
N | 199 | P199R | cCa | cGa | 1 | 1 | AY.4.2 | 0.000022 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.4.4 | 0.000409 |
N | 199 | P199P | ccA | ccC | 1 | 1 | AY.4.5 | 0.000107 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.40 | 0.000964 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.42 | 0.00004 |
N | 199 | P199del | CCA | --- | 1 | 1 | AY.43 | 0.000004 |
N | 199 | P199del1 | Cca | -ca | 1 | 1 | AY.43 | 0.000004 |
N | 199 | P199del | CCA | --- | 1 | 1 | AY.46 | 0.000104 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.46.2 | 0.000635 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.46.4 | 0.000165 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.46.6 | 0.000072 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.47 | 0.000031 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.5 | 0.000021 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.51 | 0.000909 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.52 | 0.000814 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.53 | 0.000288 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.54 | 0.000095 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.58 | 0.000907 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.59 | 0.00053 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.6 | 0.000041 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.6 | 0.000041 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.61 | 0.000105 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.61 | 0.000105 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.61 | 0.000105 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.62 | 0.000436 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.7 | 0.000196 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.7 | 0.000196 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.71 | 0.000475 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.71 | 0.000475 |
N | 199 | P199del | CCA | --- | 1 | 1 | AY.75 | 0.000056 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | AY.75.1 | 0.00018 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.79 | 0.001211 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.84 | 0.000437 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.9.1 | 0.000084 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.9.1 | 0.000084 |
N | 199 | P199del | CCA | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.9.2 | 0.000037 |
N | 199 | P199P | ccA | ccG | 1 | 1 | AY.9.2 | 0.000037 |
N | 199 | P199T | Cca | Aca | 1 | 1 | AY.92 | 0.000287 |
N | 199 | P199L | cCa | cTa | 1 | 1 | AY.93 | 0.000273 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AY.95 | 0.000761 |
N | 199 | P199P | ccA | ccT | 1 | 1 | AY.98 | 0.000079 |
N | 199 | P199S | Cca | Tca | 1 | 1 | AZ.5 | 0.003509 |
N | 199 | P199T | Cca | Aca | 1 | 1 | B | 0.000128 |
N | 199 | P199P | ccA | ccC | 1 | 1 | B | 0.000128 |
N | 199 | P199R | cCa | cGa | 1 | 1 | B.1 | 0.000009 |
N | 199 | P199I | CCa | ATa | 1 | 1 | B.1 | 0.000009 |
N | 199 | P199A | Cca | Gca | 1 | 1 | B.1 | 0.000009 |
N | 199 | P199T | Cca | Aca | 1 | 1 | B.1.1 | 0.000018 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.101 | 0.01 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.132 | 0.014925 |
N | 199 | P199Q | cCA | cAG | 1 | 1 | B.1.1.162 | 0.029412 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.174 | 0.003378 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.1.1.176 | 0.000439 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.176 | 0.000439 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.186 | 0.003436 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | B.1.1.220 | 0.001859 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.265 | 0.003155 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.273 | 0.006757 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.274 | 0.005051 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.28 | 0.000311 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.291 | 0.000742 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.1.294 | 0.001266 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.302 | 0.002075 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.303 | 0.002762 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.316 | 0.000925 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.329 | 0.003846 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.33 | 0.000421 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.343 | 0.020833 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.356 | 0.008547 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.372 | 0.000689 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.372 | 0.000689 |
N | 199 | P199Q | cCA | cAG | 1 | 1 | B.1.1.372 | 0.000689 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.1.372 | 0.000689 |
N | 199 | P199Q | cCA | cAG | 1 | 1 | B.1.1.39 | 0.00051 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.397 | 0.002252 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.420 | 0.001006 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.1.432 | 0.001266 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.433 | 0.001425 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.448 | 0.002033 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.466 | 0.008696 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.47 | 0.005348 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.1.485 | 0.016667 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.50 | 0.000679 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.507 | 0.008696 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.52 | 0.012195 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.528 | 0.004808 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.528 | 0.004808 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.53 | 0.013699 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.70 | 0.000341 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.1.70 | 0.000341 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.1.89 | 0.006061 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.104 | 0.00369 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.104 | 0.00369 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.110.3 | 0.000718 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.111 | 0.001175 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.115 | 0.021739 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.128 | 0.000635 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.1.128 | 0.000635 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.153 | 0.018868 |
N | 199 | P199Q | cCA | cAG | 1 | 1 | B.1.160 | 0.000031 |
N | 199 | P199P | ccA | ccC | 1 | 1 | B.1.160 | 0.000031 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.1.160.16 | 0.000929 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.160.26 | 0.002421 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.160.30 | 0.002976 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.177.23 | 0.003236 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.177.31 | 0.011494 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.177.4 | 0.000211 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.177.44 | 0.000519 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.177.50 | 0.004695 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.177.56 | 0.000668 |
N | 199 | P199S | CcA | TcT | 1 | 1 | B.1.177.63 | 0.002703 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | B.1.177.73 | 0.000566 |
N | 199 | P199T | Cca | Aca | 1 | 1 | B.1.177.74 | 0.015152 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.177.79 | 0.002342 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.177.83 | 0.001481 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.177.86 | 0.000183 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.179 | 0.003759 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.194 | 0.04 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.1.2 | 0.000009 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.1.223 | 0.002778 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.223 | 0.002778 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.232 | 0.000537 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.235 | 0.002519 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.240 | 0.000216 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.241 | 0.000812 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.243.1 | 0.022222 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.258.11 | 0.000396 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.258.17 | 0.000104 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.1.258.17 | 0.000104 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.265 | 0.001271 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.3 | 0.002618 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.305 | 0.002151 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.319 | 0.003049 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.325 | 0.006897 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.326 | 0.007576 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.336 | 0.002439 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.340 | 0.004292 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | B.1.351 | 0.00003 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.355 | 0.011111 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.36.17 | 0.000494 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.36.27 | 0.000763 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.36.29 | 0.000517 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.36.39 | 0.002217 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.1.369 | 0.000285 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.370 | 0.008 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.371 | 0.001122 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.378 | 0.006849 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.385 | 0.010638 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.390 | 0.010638 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.391 | 0.001127 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.395 | 0.007042 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.400.1 | 0.015152 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.411 | 0.003704 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.416.1 | 0.001563 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.417 | 0.028571 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.423 | 0.010204 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.433 | 0.003195 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.443 | 0.004673 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.443 | 0.004673 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.453 | 0.003236 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.469 | 0.00361 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.470 | 0.001404 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.473 | 0.019231 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.474 | 0.001901 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.478 | 0.011765 |
N | 199 | P199P | ccA | ccT | 1 | 1 | B.1.497 | 0.000315 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.499 | 0.00105 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.501 | 0.007353 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.521 | 0.004975 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.525 | 0.000113 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.527 | 0.003704 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.540 | 0.009709 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.550 | 0.013699 |
N | 199 | P199T | Cca | Aca | 1 | 1 | B.1.568 | 0.001111 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.568 | 0.001111 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.569 | 0.014493 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.574 | 0.002151 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.575 | 0.000303 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.576 | 0.000907 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.581 | 0.009434 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.582 | 0.000491 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.585 | 0.027778 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.586 | 0.010989 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.588 | 0.00091 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.593 | 0.01087 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.595.2 | 0.04 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.600 | 0.005848 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.605 | 0.005952 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.610 | 0.003546 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.611 | 0.04 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | B.1.617.1 | 0.000129 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.617.1 | 0.000129 |
N | 199 | P199T | Cca | Aca | 1 | 1 | B.1.617.1 | 0.000129 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.617.1 | 0.000129 |
N | 199 | P199del | CCA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 199 | P199del2 | cCA | c-- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.618 | 0.004032 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.619 | 0.000871 |
N | 199 | P199Q | cCa | cAa | 1 | 1 | B.1.623 | 0.000536 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.625 | 0.002353 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.1.628 | 0.000352 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.67 | 0.043478 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.70 | 0.02439 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.8 | 0.001972 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.81 | 0.021277 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.9.5 | 0.005682 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.1.94 | 0.027027 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.29 | 0.003509 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.55 | 0.00295 |
N | 199 | P199S | Cca | Tca | 1 | 1 | B.6 | 0.00091 |
N | 199 | P199L | cCa | cTa | 1 | 1 | B.6 | 0.00091 |
N | 199 | P199P | ccA | ccG | 1 | 1 | B.6 | 0.00091 |
N | 199 | P199L | cCa | cTa | 1 | 1 | C.18 | 0.002591 |
N | 199 | P199S | Cca | Tca | 1 | 1 | C.22 | 0.071429 |
N | 199 | P199S | Cca | Tca | 1 | 1 | C.23 | 0.005814 |
N | 199 | P199del | CCA | --- | 1 | 1 | C.35 | 0.000774 |
N | 199 | P199P | ccA | ccT | 1 | 1 | C.36.3 | 0.000567 |
N | 199 | P199del | CCA | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 199 | P199L | cCa | cTa | 1 | 1 | M.1 | 0.023256 |
N | 199 | P199P | ccA | ccC | 1 | 1 | N.10 | 0.029412 |
N | 199 | P199S | Cca | Tca | 1 | 1 | N.6 | 0.007092 |
N | 199 | P199del | CCA | --- | 1 | 1 | P.1 | 0.000016 |
N | 199 | P199L | cCa | cTa | 1 | 1 | P.1.1 | 0.000318 |
N | 199 | P199P | ccA | ccT | 1 | 1 | P.1.1 | 0.000318 |
N | 199 | P199S | Cca | Tca | 1 | 1 | P.1.12 | 0.000484 |
N | 199 | P199del | CCA | --- | 1 | 1 | P.1.12 | 0.000484 |
N | 199 | P199del | CCA | --- | 1 | 1 | P.1.14 | 0.000048 |
N | 199 | P199S | Cca | Tca | 1 | 1 | P.1.15 | 0.000232 |
N | 199 | P199L | cCa | cTa | 1 | 1 | P.1.16 | 0.000374 |
N | 199 | P199P | ccA | ccG | 1 | 1 | P.1.17 | 0.000162 |
N | 199 | P199del | CCA | --- | 1 | 1 | P.1.8 | 0.004785 |
N | 199 | P199L | cCa | cTa | 1 | 1 | P.2 | 0.000187 |
N | 199 | P199P | ccA | ccT | 1 | 1 | P.3 | 0.001595 |
N | 199 | P199S | Cca | Tca | 1 | 1 | Q.1 | 0.000126 |
N | 199 | P199P | ccA | ccT | 1 | 1 | Q.1 | 0.000126 |
N | 199 | P199L | cCa | cTa | 1 | 1 | Q.4 | 0.000455 |
N | 199 | P199S | Cca | Tca | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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