CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 197

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N197S197LnonsyntCatTa782478230.99987228862-28864
N197S197LnonsynTCaCTa782410.00012781228862-28864
N197S197TnonsynTcaAca113411330.99911828862-28864
N197S197TnonsynTcAAcT113410.00088183428862-28864
N197S197SsyntcAtcT6245190.83173128862-28864
N197S197SsyntcAtcG624930.14903828862-28864
N197S197SsyntcAtcC624120.019230828862-28864
N197S197PnonsynTcaCca5535520.99819228862-28864
N197S197PnonsynTcACcC55310.0018083228862-28864
N197S197deldelTCA---6969128862-28864
N197S197XnonsyntCatAa19160.84210528862-28864
N197S197XnonsyntCatGa1920.10526328862-28864
N197S197XnonsyntCAtAG1910.052631628862-28864
N197S197AnonsynTcaGca1414128862-28864
N197S197FnonsyntCAtTT33128862-28864
N197S197del1deltCat-a310.33333328862-28864
N197S197del2delTCa--a310.33333328862-28864
N197S197del2deltCAt--310.33333328862-28864
N197S197del1delTCa-Aa310.33333328862-28864
N197S197del1deltcAtc-310.33333328862-28864
N197S197del2delTCA--N310.33333328862-28864
N197S197InonsynTCaATa210.528862-28864
N197S197VnonsynTCAGTC210.528862-28864
N197S197VnonsynTCaGTa210.528862-28864
N197S197InonsynTCAATT210.528862-28864

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N197S197LtCatTa78237824All0.001496
N197S197LTCaCTa17824All0
N197S197LtCatTa19501950A.2.50.973054
N197S197LtCatTa14641464A.20.968895
N197S197TTcaAca11331134All0.000217
N197S197TTcAAcT11134All0
N197S197TTcaAca984984B.1.1.4200.98994
N197S197LtCatTa952952B.1.4991
N197S197LtCatTa727727AY.40.001132
N197S197StcAtcT519624All0.000099
N197S197StcAtcG93624All0.000018
N197S197StcAtcC12624All0.000002
N197S197LtCatTa622622A.2.5.20.977987
N197S197LtCatTa578578A.2.20.976351
N197S197PTcaCca552553All0.000106
N197S197PTcACcC1553All0
N197S197LtCatTa293293A.2.40.986532
N197S197StcAtcT280280B.1.1.5190.011119
N197S197PTcaCca270270B.1.6370.01973
N197S197LtCatTa207207A.2.30.981043
N197S197LtCatTa207207A.2.5.10.995192
N197S197PTcaCca139139B.1.1.70.000124
N197S197StcAtcT121121B.1.3960.085392
N197S197LtCatTa114114B.1.177.860.020914
N197S197LtCatTa100100B.1.5760.090662
N197S197LtCatTa9595A.2.5.30.979381
N197S197TTcaAca7676B.1.10.001379
N197S197delTCA---6969All0.000013
N197S197LtCatTa5656B.10.000513
N197S197LtCatTa5454B.1.1.70.000048
N197S197LtCatTa4747B.1.617.20.000177
N197S197LtCatTa3434AY.1030.000211
N197S197StcAtcT3333B.1.5250.003734
N197S197LtCatTa3030AY.250.00018
N197S197StcAtcG2830AY.40.000044
N197S197StcAtcT230AY.40.000003
N197S197TTcaAca2929B.10.000266
N197S197StcAtcT1925B.1.1.70.000017
N197S197StcAtcG625B.1.1.70.000005
N197S197StcAtcT1520B.10.000137
N197S197StcAtcG520B.10.000046
N197S197StcAtcG2020B.1.1.700.006821
N197S197XtCatAa1619All0.000003
N197S197XtCatGa219All0
N197S197XtCAtAG119All0
N197S197PTcaCca1919AY.40.00003
N197S197LtCatTa1717C.370.001973
N197S197StcAtcT1616B.1.6370.001169
N197S197PTcaCca1515B.1.20.000132
N197S197ATcaGca1414All0.000003
N197S197LtCatTa1414AY.9.10.001172
N197S197LtCatTa1414B.1.20.000123
N197S197LtCatTa1414B.1.5260.000329
N197S197LtCatTa1313AY.30.000129
N197S197delTCA---1212AY.60.000494
N197S197PTcaCca1212B.10.00011
N197S197delTCA---1111B.10.000101
N197S197LtCatTa1111B.1.4090.008594
N197S197LtCatTa1111B.1.4290.000259
N197S197LtCatTa1010AY.290.000158
N197S197LtCatTa99B.1.499.11
N197S197LtCatTa88AY.50.000165
N197S197delTCA---88B.1.1.70.000007
N197S197PTcaCca88B.1.2210.000568
N197S197PTcaCca88B.1.4090.00625
N197S197TTcaAca88B.1.4290.000188
N197S197StcAtcG67AY.1030.000037
N197S197StcAtcT17AY.1030.000006
N197S197PTcaCca77AY.440.000043
N197S197LtCatTa77AY.470.000218
N197S197LtCatTa77B.1.4270.000353
N197S197LtCatTa66A0.002322
N197S197LtCatTa66AY.4.40.002455
N197S197StcAtcG36AY.430.000013
N197S197StcAtcT26AY.430.000009
N197S197StcAtcC16AY.430.000004
N197S197LtCatTa66AY.440.000037
N197S197LtCatTa66B.1.3510.000178
N197S197PTcaCca66B.1.3800.039735
N197S197delTCA---55AY.250.00003
N197S197LtCatTa55AY.4.20.000108
N197S197LtCatTa55AY.430.000022
N197S197LtCatTa55B.1.10.000091
N197S197StcAtcG35B.1.10.000054
N197S197StcAtcT25B.1.10.000036
N197S197PTcaCca55B.1.1.370.000964
N197S197PTcaCca55B.1.1770.000066
N197S197LtCatTa55B.1.1770.000066
N197S197StcAtcC35B.1.20.000026
N197S197StcAtcT15B.1.20.000009
N197S197StcAtcG15B.1.20.000009
N197S197PTcaCca55B.1.617.20.000019
N197S197LtCatTa55C.360.004554
N197S197delTCA---55D.20.000375
N197S197PTcaCca44AY.1000.000184
N197S197PTcaCca44AY.160.001519
N197S197LtCatTa44AY.60.000165
N197S197XtCatAa34B.10.000027
N197S197XtCAtAG14B.10.000009
N197S197ATcaGca44B.1.1.2140.000222
N197S197PTcaCca44B.1.1.2140.000222
N197S197LtCatTa44B.1.1.370.000771
N197S197TTcaAca44B.1.1.4090.011331
N197S197LtCatTa44B.1.1.5190.000159
N197S197LtCatTa44B.1.2390.004884
N197S197PTcaCca34B.1.4290.000071
N197S197PTcACcC14B.1.4290.000024
N197S197PTcaCca44B.1.4410.038462
N197S197LtCatTa44B.1.5250.000453
N197S197LtCatTa44P.10.000063
N197S197FtCAtTT33All0.000001
N197S197del2tCAt--13All0
N197S197del1tcAtc-13All0
N197S197del2TCA--N13All0
N197S197del1tCat-a13All0
N197S197del2TCa--a13All0
N197S197del1TCa-Aa13All0
N197S197LtCatTa33AY.230.000209
N197S197StcAtcG33AY.460.000312
N197S197StcAtcG33AY.50.000062
N197S197PTcaCca33AY.99.20.000276
N197S197LtCatTa33B0.000383
N197S197LtCatTa33B.1.1570.008955
N197S197StcAtcT23B.1.1770.000026
N197S197StcAtcG13B.1.1770.000013
N197S197TTcaAca33B.1.20.000026
N197S197PTcaCca33B.1.2580.0002
N197S197TTcaAca33B.1.438.10.000322
N197S197LtCatTa33B.1.4980.061224
N197S197XtCatAa33B.1.5250.000339
N197S197PTcaCca33B.1.5960.000261
N197S197StcAtcT23B.1.617.20.000008
N197S197StcAtcG13B.1.617.20.000004
N197S197StcAtcT33R.10.00027
N197S197StcAtcT120.055556
N197S197ITCaATa120.055556
N197S197ITCAATT120.055556
N197S197TTcaAca120.055556
N197S197StcAtcC120.055556
N197S197TTcAAcT120.055556
N197S197ITCaATa12All0
N197S197VTCaGTa12All0
N197S197ITCAATT12All0
N197S197VTCAGTC12All0
N197S197TTcaAca22AT.10.010256
N197S197StcAtcT22AY.1020.000053
N197S197LtCatTa22AY.1190.000071
N197S197StcAtcT22AY.140.000176
N197S197StcAtcT22AY.200.000078
N197S197LtCatTa22AY.260.000057
N197S197PTcaCca22AY.30.00002
N197S197LtCatTa22AY.39.10.000079
N197S197PTcaCca22AY.39.10.000079
N197S197VTCaGTa12AY.40.000002
N197S197VTCAGTC12AY.40.000002
N197S197PTcaCca22AY.4.20.000043
N197S197delTCA---22AY.400.001929
N197S197LtCatTa22AY.420.00008
N197S197delTCA---22AY.500.001599
N197S197StcAtcT22AY.660.002139
N197S197LtCatTa22AY.9.20.000073
N197S197TTcaAca22B.1.1.1610.007067
N197S197LtCatTa22B.1.1.2840.000215
N197S197LtCatTa22B.1.1.3180.000604
N197S197LtCatTa22B.1.1.3680.006173
N197S197ATcaGca22B.1.1.70.000002
N197S197TTcaAca22B.1.1.70.000002
N197S197TTcaAca22B.1.1.830.00542
N197S197LtCatTa22B.1.1390.001466
N197S197delTCA---22B.1.20.000018
N197S197LtCatTa22B.1.2340.000264
N197S197LtCatTa22B.1.2580.000133
N197S197delTCA---22B.1.3510.000059
N197S197StcAtcC22B.1.4260.002018
N197S197LtCatTa22B.1.5030.004975
N197S197LtCatTa12B.1.6120.002653
N197S197LTCaCTa12B.1.6120.002653
N197S197LtCatTa22B.1.6210.000177
N197S197LtCatTa22B.400.000729
N197S197StcAtcG12C.370.000116
N197S197StcAtcT12C.370.000116
N197S197LtCatTa22D.20.00015
N197S197PTcaCca22D.20.00015
N197S197LtCatTa22P.1.150.000465
N197S197LtCatTa22P.1.160.000748
N197S197LtCatTa110.055556
N197S197FtCAtTT110.055556
N197S197FtCAtTT11A.2.20.001689
N197S197LtCatTa11A.30.002096
N197S197LtCatTa11AD.20.000219
N197S197TTcaAca11AY.1000.000046
N197S197StcAtcT11AY.1000.000046
N197S197LtCatTa11AY.1010.00049
N197S197LtCatTa11AY.1020.000027
N197S197ATcaGca11AY.1030.000006
N197S197PTcaCca11AY.1030.000006
N197S197XtCatAa11AY.1030.000006
N197S197LtCatTa11AY.1060.000335
N197S197LtCatTa11AY.1180.000063
N197S197PTcaCca11AY.120.000316
N197S197delTCA---11AY.120.10.000321
N197S197PTcaCca11AY.200.000039
N197S197LtCatTa11AY.23.10.000417
N197S197StcAtcT11AY.270.000065
N197S197StcAtcG11AY.290.000016
N197S197TTcaAca11AY.30.00001
N197S197delTCA---11AY.40.000002
N197S197ATcaGca11AY.40.000002
N197S197LtCatTa11AY.4.50.000107
N197S197XtCatAa11AY.420.00004
N197S197delTCA---11AY.430.000004
N197S197PTcaCca11AY.430.000004
N197S197ATcaGca11AY.430.000004
N197S197StcAtcG11AY.440.000006
N197S197delTCA---11AY.460.000104
N197S197XtCatAa11AY.520.000814
N197S197LtCatTa11AY.610.000105
N197S197StcAtcT11AY.670.000464
N197S197XtCatAa11AY.680.000274
N197S197delTCA---11AY.750.000056
N197S197StcAtcT11AY.9.10.000084
N197S197del1TCa-Aa11AY.9.20.000037
N197S197delTCA---11AY.9.20.000037
N197S197StcAtcG11AY.900.000684
N197S197PTcaCca11AY.980.000079
N197S197StcAtcG11AY.98.10.000048
N197S197StcAtcC11AY.99.20.000092
N197S197XtCatAa11B0.000128
N197S197StcAtcC11B0.000128
N197S197del2TCa--a11B.10.000009
N197S197ATcaGca11B.10.000009
N197S197FtCAtTT11B.10.000009
N197S197del1tCat-a11B.1.10.000018
N197S197TTcaAca11B.1.1.100.001115
N197S197TTcaAca11B.1.1.1740.003378
N197S197StcAtcT11B.1.1.1750.076923
N197S197TTcaAca11B.1.1.2000.007463
N197S197LtCatTa11B.1.1.2050.003717
N197S197LtCatTa11B.1.1.2100.005714
N197S197LtCatTa11B.1.1.2160.00089
N197S197LtCatTa11B.1.1.2220.000204
N197S197TTcaAca11B.1.1.2540.011236
N197S197LtCatTa11B.1.1.3050.003861
N197S197TTcaAca11B.1.1.3070.002532
N197S197LtCatTa11B.1.1.3110.000358
N197S197StcAtcT11B.1.1.3180.000302
N197S197LtCatTa11B.1.1.330.000421
N197S197TTcaAca11B.1.1.3480.000796
N197S197StcAtcG11B.1.1.3690.000446
N197S197TTcaAca11B.1.1.4170.002703
N197S197StcAtcC11B.1.1.4320.001266
N197S197LtCatTa11B.1.1.4560.055556
N197S197ATcaGca11B.1.1.460.004367
N197S197LtCatTa11B.1.1.540.003021
N197S197TTcaAca11B.1.1.560.017857
N197S197del1tcAtc-11B.1.1.70.000001
N197S197XtCatAa11B.1.1.70.000001
N197S197StcAtcT11B.1.1110.001175
N197S197LtCatTa11B.1.1600.000031
N197S197PTcaCca11B.1.1600.000031
N197S197TTcaAca11B.1.1770.000013
N197S197delTCA---11B.1.1770.000013
N197S197LtCatTa11B.1.177.210.000076
N197S197LtCatTa11B.1.177.440.000519
N197S197LtCatTa11B.1.177.600.000218
N197S197PTcaCca11B.1.177.630.002703
N197S197del2TCA--N11B.1.177.680.015152
N197S197del2tCAt--11B.1.20.000009
N197S197LtCatTa11B.1.2010.005682
N197S197PTcaCca11B.1.2100.002132
N197S197TTcaAca11B.1.2140.003663
N197S197StcAtcC11B.1.2210.000071
N197S197delTCA---11B.1.2210.000071
N197S197PTcaCca11B.1.2220.001692
N197S197TTcaAca11B.1.2230.002778
N197S197StcAtcG11B.1.2370.004975
N197S197StcAtcT11B.1.258.140.00098
N197S197XtCatAa11B.1.2600.003344
N197S197LtCatTa11B.1.2850.090909
N197S197LtCatTa11B.1.3110.000275
N197S197LtCatTa11B.1.3300.028571
N197S197PTcaCca11B.1.3510.00003
N197S197ATcaGca11B.1.351.20.000303
N197S197LtCatTa11B.1.351.20.000303
N197S197LtCatTa11B.1.3540.043478
N197S197LtCatTa11B.1.3560.001727
N197S197LtCatTa11B.1.3670.000792
N197S197LtCatTa11B.1.3800.006623
N197S197StcAtcG11B.1.4080.00369
N197S197delTCA---11B.1.416.10.001563
N197S197PTcaCca11B.1.4220.000812
N197S197delTCA---11B.1.4270.00005
N197S197StcAtcC11B.1.4290.000024
N197S197XtCatAa11B.1.4530.003236
N197S197delTCA---11B.1.4650.003802
N197S197XtCatAa11B.1.4680.005714
N197S197delTCA---11B.1.5250.000113
N197S197TTcaAca11B.1.5260.000024
N197S197PTcaCca11B.1.5260.000024
N197S197LtCatTa11B.1.5420.03125
N197S197PTcaCca11B.1.5610.000397
N197S197LtCatTa11B.1.5710.009709
N197S197PTcaCca11B.1.5750.000303
N197S197delTCA---11B.1.5760.000907
N197S197PTcaCca11B.1.5880.00091
N197S197LtCatTa11B.1.5950.000261
N197S197delTCA---11B.1.5960.000087
N197S197StcAtcG11B.1.5960.000087
N197S197PTcaCca11B.1.6090.000479
N197S197TTcaAca11B.1.6090.000479
N197S197StcAtcG11B.1.617.10.000129
N197S197delTCA---11B.1.617.10.000129
N197S197delTCA---11B.1.617.20.000004
N197S197ATcaGca11B.1.617.20.000004
N197S197StcAtcT11B.1.6210.000089
N197S197XtCatAa11B.1.6230.000536
N197S197LtCatTa11B.1.6230.000536
N197S197LtCatTa11B.1.6330.041667
N197S197LtCatTa11B.260.014706
N197S197StcAtcT11B.40.002208
N197S197StcAtcG11B.550.00295
N197S197XtCatGa11B.6.60.000889
N197S197ATcaGca11C.350.000774
N197S197delTCA---11C.37.10.002618
N197S197XtCatGa11D.20.000075
N197S197TTcaAca11P.10.000016
N197S197delTCA---11P.10.000016
N197S197PTcaCca11P.10.000016
N197S197StcAtcG11P.10.000016
N197S197delTCA---11P.1.140.000048
N197S197delTCA---11P.1.80.004785
N197S197StcAtcG11P.20.000187
N197S197TTcaAca11Q.20.000613