CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 197

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	197	S197L		nonsyn	tCa	tTa	7824	7823	0.999872	28862-28864
N	197	S197L		nonsyn	TCa	CTa	7824	1	0.000127812	28862-28864
N	197	S197T		nonsyn	Tca	Aca	1134	1133	0.999118	28862-28864
N	197	S197T		nonsyn	TcA	AcT	1134	1	0.000881834	28862-28864
N	197	S197S		syn	tcA	tcT	624	519	0.831731	28862-28864
N	197	S197S		syn	tcA	tcG	624	93	0.149038	28862-28864
N	197	S197S		syn	tcA	tcC	624	12	0.0192308	28862-28864
N	197	S197P		nonsyn	Tca	Cca	553	552	0.998192	28862-28864
N	197	S197P		nonsyn	TcA	CcC	553	1	0.00180832	28862-28864
N	197	S197del		del	TCA	---	69	69	1	28862-28864
N	197	S197X		nonsyn	tCa	tAa	19	16	0.842105	28862-28864
N	197	S197X		nonsyn	tCa	tGa	19	2	0.105263	28862-28864
N	197	S197X		nonsyn	tCA	tAG	19	1	0.0526316	28862-28864
N	197	S197A		nonsyn	Tca	Gca	14	14	1	28862-28864
N	197	S197F		nonsyn	tCA	tTT	3	3	1	28862-28864
N	197	S197del1		del	tCa	t-a	3	1	0.333333	28862-28864
N	197	S197del2		del	TCa	--a	3	1	0.333333	28862-28864
N	197	S197del2		del	tCA	t--	3	1	0.333333	28862-28864
N	197	S197del1		del	TCa	-Aa	3	1	0.333333	28862-28864
N	197	S197del1		del	tcA	tc-	3	1	0.333333	28862-28864
N	197	S197del2		del	TCA	--N	3	1	0.333333	28862-28864
N	197	S197I		nonsyn	TCa	ATa	2	1	0.5	28862-28864
N	197	S197V		nonsyn	TCA	GTC	2	1	0.5	28862-28864
N	197	S197V		nonsyn	TCa	GTa	2	1	0.5	28862-28864
N	197	S197I		nonsyn	TCA	ATT	2	1	0.5	28862-28864

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	197	S197L	tCa	tTa	7823	7824	All	0.001496
N	197	S197L	TCa	CTa	1	7824	All	0
N	197	S197L	tCa	tTa	1950	1950	A.2.5	0.973054
N	197	S197L	tCa	tTa	1464	1464	A.2	0.968895
N	197	S197T	Tca	Aca	1133	1134	All	0.000217
N	197	S197T	TcA	AcT	1	1134	All	0
N	197	S197T	Tca	Aca	984	984	B.1.1.420	0.98994
N	197	S197L	tCa	tTa	952	952	B.1.499	1
N	197	S197L	tCa	tTa	727	727	AY.4	0.001132
N	197	S197S	tcA	tcT	519	624	All	0.000099
N	197	S197S	tcA	tcG	93	624	All	0.000018
N	197	S197S	tcA	tcC	12	624	All	0.000002
N	197	S197L	tCa	tTa	622	622	A.2.5.2	0.977987
N	197	S197L	tCa	tTa	578	578	A.2.2	0.976351
N	197	S197P	Tca	Cca	552	553	All	0.000106
N	197	S197P	TcA	CcC	1	553	All	0
N	197	S197L	tCa	tTa	293	293	A.2.4	0.986532
N	197	S197S	tcA	tcT	280	280	B.1.1.519	0.011119
N	197	S197P	Tca	Cca	270	270	B.1.637	0.01973
N	197	S197L	tCa	tTa	207	207	A.2.3	0.981043
N	197	S197L	tCa	tTa	207	207	A.2.5.1	0.995192
N	197	S197P	Tca	Cca	139	139	B.1.1.7	0.000124
N	197	S197S	tcA	tcT	121	121	B.1.396	0.085392
N	197	S197L	tCa	tTa	114	114	B.1.177.86	0.020914
N	197	S197L	tCa	tTa	100	100	B.1.576	0.090662
N	197	S197L	tCa	tTa	95	95	A.2.5.3	0.979381
N	197	S197T	Tca	Aca	76	76	B.1.1	0.001379
N	197	S197del	TCA	---	69	69	All	0.000013
N	197	S197L	tCa	tTa	56	56	B.1	0.000513
N	197	S197L	tCa	tTa	54	54	B.1.1.7	0.000048
N	197	S197L	tCa	tTa	47	47	B.1.617.2	0.000177
N	197	S197L	tCa	tTa	34	34	AY.103	0.000211
N	197	S197S	tcA	tcT	33	33	B.1.525	0.003734
N	197	S197L	tCa	tTa	30	30	AY.25	0.00018
N	197	S197S	tcA	tcG	28	30	AY.4	0.000044
N	197	S197S	tcA	tcT	2	30	AY.4	0.000003
N	197	S197T	Tca	Aca	29	29	B.1	0.000266
N	197	S197S	tcA	tcT	19	25	B.1.1.7	0.000017
N	197	S197S	tcA	tcG	6	25	B.1.1.7	0.000005
N	197	S197S	tcA	tcT	15	20	B.1	0.000137
N	197	S197S	tcA	tcG	5	20	B.1	0.000046
N	197	S197S	tcA	tcG	20	20	B.1.1.70	0.006821
N	197	S197X	tCa	tAa	16	19	All	0.000003
N	197	S197X	tCa	tGa	2	19	All	0
N	197	S197X	tCA	tAG	1	19	All	0
N	197	S197P	Tca	Cca	19	19	AY.4	0.00003
N	197	S197L	tCa	tTa	17	17	C.37	0.001973
N	197	S197S	tcA	tcT	16	16	B.1.637	0.001169
N	197	S197P	Tca	Cca	15	15	B.1.2	0.000132
N	197	S197A	Tca	Gca	14	14	All	0.000003
N	197	S197L	tCa	tTa	14	14	AY.9.1	0.001172
N	197	S197L	tCa	tTa	14	14	B.1.2	0.000123
N	197	S197L	tCa	tTa	14	14	B.1.526	0.000329
N	197	S197L	tCa	tTa	13	13	AY.3	0.000129
N	197	S197del	TCA	---	12	12	AY.6	0.000494
N	197	S197P	Tca	Cca	12	12	B.1	0.00011
N	197	S197del	TCA	---	11	11	B.1	0.000101
N	197	S197L	tCa	tTa	11	11	B.1.409	0.008594
N	197	S197L	tCa	tTa	11	11	B.1.429	0.000259
N	197	S197L	tCa	tTa	10	10	AY.29	0.000158
N	197	S197L	tCa	tTa	9	9	B.1.499.1	1
N	197	S197L	tCa	tTa	8	8	AY.5	0.000165
N	197	S197del	TCA	---	8	8	B.1.1.7	0.000007
N	197	S197P	Tca	Cca	8	8	B.1.221	0.000568
N	197	S197P	Tca	Cca	8	8	B.1.409	0.00625
N	197	S197T	Tca	Aca	8	8	B.1.429	0.000188
N	197	S197S	tcA	tcG	6	7	AY.103	0.000037
N	197	S197S	tcA	tcT	1	7	AY.103	0.000006
N	197	S197P	Tca	Cca	7	7	AY.44	0.000043
N	197	S197L	tCa	tTa	7	7	AY.47	0.000218
N	197	S197L	tCa	tTa	7	7	B.1.427	0.000353
N	197	S197L	tCa	tTa	6	6	A	0.002322
N	197	S197L	tCa	tTa	6	6	AY.4.4	0.002455
N	197	S197S	tcA	tcG	3	6	AY.43	0.000013
N	197	S197S	tcA	tcT	2	6	AY.43	0.000009
N	197	S197S	tcA	tcC	1	6	AY.43	0.000004
N	197	S197L	tCa	tTa	6	6	AY.44	0.000037
N	197	S197L	tCa	tTa	6	6	B.1.351	0.000178
N	197	S197P	Tca	Cca	6	6	B.1.380	0.039735
N	197	S197del	TCA	---	5	5	AY.25	0.00003
N	197	S197L	tCa	tTa	5	5	AY.4.2	0.000108
N	197	S197L	tCa	tTa	5	5	AY.43	0.000022
N	197	S197L	tCa	tTa	5	5	B.1.1	0.000091
N	197	S197S	tcA	tcG	3	5	B.1.1	0.000054
N	197	S197S	tcA	tcT	2	5	B.1.1	0.000036
N	197	S197P	Tca	Cca	5	5	B.1.1.37	0.000964
N	197	S197P	Tca	Cca	5	5	B.1.177	0.000066
N	197	S197L	tCa	tTa	5	5	B.1.177	0.000066
N	197	S197S	tcA	tcC	3	5	B.1.2	0.000026
N	197	S197S	tcA	tcT	1	5	B.1.2	0.000009
N	197	S197S	tcA	tcG	1	5	B.1.2	0.000009
N	197	S197P	Tca	Cca	5	5	B.1.617.2	0.000019
N	197	S197L	tCa	tTa	5	5	C.36	0.004554
N	197	S197del	TCA	---	5	5	D.2	0.000375
N	197	S197P	Tca	Cca	4	4	AY.100	0.000184
N	197	S197P	Tca	Cca	4	4	AY.16	0.001519
N	197	S197L	tCa	tTa	4	4	AY.6	0.000165
N	197	S197X	tCa	tAa	3	4	B.1	0.000027
N	197	S197X	tCA	tAG	1	4	B.1	0.000009
N	197	S197A	Tca	Gca	4	4	B.1.1.214	0.000222
N	197	S197P	Tca	Cca	4	4	B.1.1.214	0.000222
N	197	S197L	tCa	tTa	4	4	B.1.1.37	0.000771
N	197	S197T	Tca	Aca	4	4	B.1.1.409	0.011331
N	197	S197L	tCa	tTa	4	4	B.1.1.519	0.000159
N	197	S197L	tCa	tTa	4	4	B.1.239	0.004884
N	197	S197P	Tca	Cca	3	4	B.1.429	0.000071
N	197	S197P	TcA	CcC	1	4	B.1.429	0.000024
N	197	S197P	Tca	Cca	4	4	B.1.441	0.038462
N	197	S197L	tCa	tTa	4	4	B.1.525	0.000453
N	197	S197L	tCa	tTa	4	4	P.1	0.000063
N	197	S197F	tCA	tTT	3	3	All	0.000001
N	197	S197del2	tCA	t--	1	3	All	0
N	197	S197del1	tcA	tc-	1	3	All	0
N	197	S197del2	TCA	--N	1	3	All	0
N	197	S197del1	tCa	t-a	1	3	All	0
N	197	S197del2	TCa	--a	1	3	All	0
N	197	S197del1	TCa	-Aa	1	3	All	0
N	197	S197L	tCa	tTa	3	3	AY.23	0.000209
N	197	S197S	tcA	tcG	3	3	AY.46	0.000312
N	197	S197S	tcA	tcG	3	3	AY.5	0.000062
N	197	S197P	Tca	Cca	3	3	AY.99.2	0.000276
N	197	S197L	tCa	tTa	3	3	B	0.000383
N	197	S197L	tCa	tTa	3	3	B.1.157	0.008955
N	197	S197S	tcA	tcT	2	3	B.1.177	0.000026
N	197	S197S	tcA	tcG	1	3	B.1.177	0.000013
N	197	S197T	Tca	Aca	3	3	B.1.2	0.000026
N	197	S197P	Tca	Cca	3	3	B.1.258	0.0002
N	197	S197T	Tca	Aca	3	3	B.1.438.1	0.000322
N	197	S197L	tCa	tTa	3	3	B.1.498	0.061224
N	197	S197X	tCa	tAa	3	3	B.1.525	0.000339
N	197	S197P	Tca	Cca	3	3	B.1.596	0.000261
N	197	S197S	tcA	tcT	2	3	B.1.617.2	0.000008
N	197	S197S	tcA	tcG	1	3	B.1.617.2	0.000004
N	197	S197S	tcA	tcT	3	3	R.1	0.00027
N	197	S197S	tcA	tcT	1	2		0.055556
N	197	S197I	TCa	ATa	1	2		0.055556
N	197	S197I	TCA	ATT	1	2		0.055556
N	197	S197T	Tca	Aca	1	2		0.055556
N	197	S197S	tcA	tcC	1	2		0.055556
N	197	S197T	TcA	AcT	1	2		0.055556
N	197	S197I	TCa	ATa	1	2	All	0
N	197	S197V	TCa	GTa	1	2	All	0
N	197	S197I	TCA	ATT	1	2	All	0
N	197	S197V	TCA	GTC	1	2	All	0
N	197	S197T	Tca	Aca	2	2	AT.1	0.010256
N	197	S197S	tcA	tcT	2	2	AY.102	0.000053
N	197	S197L	tCa	tTa	2	2	AY.119	0.000071
N	197	S197S	tcA	tcT	2	2	AY.14	0.000176
N	197	S197S	tcA	tcT	2	2	AY.20	0.000078
N	197	S197L	tCa	tTa	2	2	AY.26	0.000057
N	197	S197P	Tca	Cca	2	2	AY.3	0.00002
N	197	S197L	tCa	tTa	2	2	AY.39.1	0.000079
N	197	S197P	Tca	Cca	2	2	AY.39.1	0.000079
N	197	S197V	TCa	GTa	1	2	AY.4	0.000002
N	197	S197V	TCA	GTC	1	2	AY.4	0.000002
N	197	S197P	Tca	Cca	2	2	AY.4.2	0.000043
N	197	S197del	TCA	---	2	2	AY.40	0.001929
N	197	S197L	tCa	tTa	2	2	AY.42	0.00008
N	197	S197del	TCA	---	2	2	AY.50	0.001599
N	197	S197S	tcA	tcT	2	2	AY.66	0.002139
N	197	S197L	tCa	tTa	2	2	AY.9.2	0.000073
N	197	S197T	Tca	Aca	2	2	B.1.1.161	0.007067
N	197	S197L	tCa	tTa	2	2	B.1.1.284	0.000215
N	197	S197L	tCa	tTa	2	2	B.1.1.318	0.000604
N	197	S197L	tCa	tTa	2	2	B.1.1.368	0.006173
N	197	S197A	Tca	Gca	2	2	B.1.1.7	0.000002
N	197	S197T	Tca	Aca	2	2	B.1.1.7	0.000002
N	197	S197T	Tca	Aca	2	2	B.1.1.83	0.00542
N	197	S197L	tCa	tTa	2	2	B.1.139	0.001466
N	197	S197del	TCA	---	2	2	B.1.2	0.000018
N	197	S197L	tCa	tTa	2	2	B.1.234	0.000264
N	197	S197L	tCa	tTa	2	2	B.1.258	0.000133
N	197	S197del	TCA	---	2	2	B.1.351	0.000059
N	197	S197S	tcA	tcC	2	2	B.1.426	0.002018
N	197	S197L	tCa	tTa	2	2	B.1.503	0.004975
N	197	S197L	tCa	tTa	1	2	B.1.612	0.002653
N	197	S197L	TCa	CTa	1	2	B.1.612	0.002653
N	197	S197L	tCa	tTa	2	2	B.1.621	0.000177
N	197	S197L	tCa	tTa	2	2	B.40	0.000729
N	197	S197S	tcA	tcG	1	2	C.37	0.000116
N	197	S197S	tcA	tcT	1	2	C.37	0.000116
N	197	S197L	tCa	tTa	2	2	D.2	0.00015
N	197	S197P	Tca	Cca	2	2	D.2	0.00015
N	197	S197L	tCa	tTa	2	2	P.1.15	0.000465
N	197	S197L	tCa	tTa	2	2	P.1.16	0.000748
N	197	S197L	tCa	tTa	1	1		0.055556
N	197	S197F	tCA	tTT	1	1		0.055556
N	197	S197F	tCA	tTT	1	1	A.2.2	0.001689
N	197	S197L	tCa	tTa	1	1	A.3	0.002096
N	197	S197L	tCa	tTa	1	1	AD.2	0.000219
N	197	S197T	Tca	Aca	1	1	AY.100	0.000046
N	197	S197S	tcA	tcT	1	1	AY.100	0.000046
N	197	S197L	tCa	tTa	1	1	AY.101	0.00049
N	197	S197L	tCa	tTa	1	1	AY.102	0.000027
N	197	S197A	Tca	Gca	1	1	AY.103	0.000006
N	197	S197P	Tca	Cca	1	1	AY.103	0.000006
N	197	S197X	tCa	tAa	1	1	AY.103	0.000006
N	197	S197L	tCa	tTa	1	1	AY.106	0.000335
N	197	S197L	tCa	tTa	1	1	AY.118	0.000063
N	197	S197P	Tca	Cca	1	1	AY.12	0.000316
N	197	S197del	TCA	---	1	1	AY.120.1	0.000321
N	197	S197P	Tca	Cca	1	1	AY.20	0.000039
N	197	S197L	tCa	tTa	1	1	AY.23.1	0.000417
N	197	S197S	tcA	tcT	1	1	AY.27	0.000065
N	197	S197S	tcA	tcG	1	1	AY.29	0.000016
N	197	S197T	Tca	Aca	1	1	AY.3	0.00001
N	197	S197del	TCA	---	1	1	AY.4	0.000002
N	197	S197A	Tca	Gca	1	1	AY.4	0.000002
N	197	S197L	tCa	tTa	1	1	AY.4.5	0.000107
N	197	S197X	tCa	tAa	1	1	AY.42	0.00004
N	197	S197del	TCA	---	1	1	AY.43	0.000004
N	197	S197P	Tca	Cca	1	1	AY.43	0.000004
N	197	S197A	Tca	Gca	1	1	AY.43	0.000004
N	197	S197S	tcA	tcG	1	1	AY.44	0.000006
N	197	S197del	TCA	---	1	1	AY.46	0.000104
N	197	S197X	tCa	tAa	1	1	AY.52	0.000814
N	197	S197L	tCa	tTa	1	1	AY.61	0.000105
N	197	S197S	tcA	tcT	1	1	AY.67	0.000464
N	197	S197X	tCa	tAa	1	1	AY.68	0.000274
N	197	S197del	TCA	---	1	1	AY.75	0.000056
N	197	S197S	tcA	tcT	1	1	AY.9.1	0.000084
N	197	S197del1	TCa	-Aa	1	1	AY.9.2	0.000037
N	197	S197del	TCA	---	1	1	AY.9.2	0.000037
N	197	S197S	tcA	tcG	1	1	AY.90	0.000684
N	197	S197P	Tca	Cca	1	1	AY.98	0.000079
N	197	S197S	tcA	tcG	1	1	AY.98.1	0.000048
N	197	S197S	tcA	tcC	1	1	AY.99.2	0.000092
N	197	S197X	tCa	tAa	1	1	B	0.000128
N	197	S197S	tcA	tcC	1	1	B	0.000128
N	197	S197del2	TCa	--a	1	1	B.1	0.000009
N	197	S197A	Tca	Gca	1	1	B.1	0.000009
N	197	S197F	tCA	tTT	1	1	B.1	0.000009
N	197	S197del1	tCa	t-a	1	1	B.1.1	0.000018
N	197	S197T	Tca	Aca	1	1	B.1.1.10	0.001115
N	197	S197T	Tca	Aca	1	1	B.1.1.174	0.003378
N	197	S197S	tcA	tcT	1	1	B.1.1.175	0.076923
N	197	S197T	Tca	Aca	1	1	B.1.1.200	0.007463
N	197	S197L	tCa	tTa	1	1	B.1.1.205	0.003717
N	197	S197L	tCa	tTa	1	1	B.1.1.210	0.005714
N	197	S197L	tCa	tTa	1	1	B.1.1.216	0.00089
N	197	S197L	tCa	tTa	1	1	B.1.1.222	0.000204
N	197	S197T	Tca	Aca	1	1	B.1.1.254	0.011236
N	197	S197L	tCa	tTa	1	1	B.1.1.305	0.003861
N	197	S197T	Tca	Aca	1	1	B.1.1.307	0.002532
N	197	S197L	tCa	tTa	1	1	B.1.1.311	0.000358
N	197	S197S	tcA	tcT	1	1	B.1.1.318	0.000302
N	197	S197L	tCa	tTa	1	1	B.1.1.33	0.000421
N	197	S197T	Tca	Aca	1	1	B.1.1.348	0.000796
N	197	S197S	tcA	tcG	1	1	B.1.1.369	0.000446
N	197	S197T	Tca	Aca	1	1	B.1.1.417	0.002703
N	197	S197S	tcA	tcC	1	1	B.1.1.432	0.001266
N	197	S197L	tCa	tTa	1	1	B.1.1.456	0.055556
N	197	S197A	Tca	Gca	1	1	B.1.1.46	0.004367
N	197	S197L	tCa	tTa	1	1	B.1.1.54	0.003021
N	197	S197T	Tca	Aca	1	1	B.1.1.56	0.017857
N	197	S197del1	tcA	tc-	1	1	B.1.1.7	0.000001
N	197	S197X	tCa	tAa	1	1	B.1.1.7	0.000001
N	197	S197S	tcA	tcT	1	1	B.1.111	0.001175
N	197	S197L	tCa	tTa	1	1	B.1.160	0.000031
N	197	S197P	Tca	Cca	1	1	B.1.160	0.000031
N	197	S197T	Tca	Aca	1	1	B.1.177	0.000013
N	197	S197del	TCA	---	1	1	B.1.177	0.000013
N	197	S197L	tCa	tTa	1	1	B.1.177.21	0.000076
N	197	S197L	tCa	tTa	1	1	B.1.177.44	0.000519
N	197	S197L	tCa	tTa	1	1	B.1.177.60	0.000218
N	197	S197P	Tca	Cca	1	1	B.1.177.63	0.002703
N	197	S197del2	TCA	--N	1	1	B.1.177.68	0.015152
N	197	S197del2	tCA	t--	1	1	B.1.2	0.000009
N	197	S197L	tCa	tTa	1	1	B.1.201	0.005682
N	197	S197P	Tca	Cca	1	1	B.1.210	0.002132
N	197	S197T	Tca	Aca	1	1	B.1.214	0.003663
N	197	S197S	tcA	tcC	1	1	B.1.221	0.000071
N	197	S197del	TCA	---	1	1	B.1.221	0.000071
N	197	S197P	Tca	Cca	1	1	B.1.222	0.001692
N	197	S197T	Tca	Aca	1	1	B.1.223	0.002778
N	197	S197S	tcA	tcG	1	1	B.1.237	0.004975
N	197	S197S	tcA	tcT	1	1	B.1.258.14	0.00098
N	197	S197X	tCa	tAa	1	1	B.1.260	0.003344
N	197	S197L	tCa	tTa	1	1	B.1.285	0.090909
N	197	S197L	tCa	tTa	1	1	B.1.311	0.000275
N	197	S197L	tCa	tTa	1	1	B.1.330	0.028571
N	197	S197P	Tca	Cca	1	1	B.1.351	0.00003
N	197	S197A	Tca	Gca	1	1	B.1.351.2	0.000303
N	197	S197L	tCa	tTa	1	1	B.1.351.2	0.000303
N	197	S197L	tCa	tTa	1	1	B.1.354	0.043478
N	197	S197L	tCa	tTa	1	1	B.1.356	0.001727
N	197	S197L	tCa	tTa	1	1	B.1.367	0.000792
N	197	S197L	tCa	tTa	1	1	B.1.380	0.006623
N	197	S197S	tcA	tcG	1	1	B.1.408	0.00369
N	197	S197del	TCA	---	1	1	B.1.416.1	0.001563
N	197	S197P	Tca	Cca	1	1	B.1.422	0.000812
N	197	S197del	TCA	---	1	1	B.1.427	0.00005
N	197	S197S	tcA	tcC	1	1	B.1.429	0.000024
N	197	S197X	tCa	tAa	1	1	B.1.453	0.003236
N	197	S197del	TCA	---	1	1	B.1.465	0.003802
N	197	S197X	tCa	tAa	1	1	B.1.468	0.005714
N	197	S197del	TCA	---	1	1	B.1.525	0.000113
N	197	S197T	Tca	Aca	1	1	B.1.526	0.000024
N	197	S197P	Tca	Cca	1	1	B.1.526	0.000024
N	197	S197L	tCa	tTa	1	1	B.1.542	0.03125
N	197	S197P	Tca	Cca	1	1	B.1.561	0.000397
N	197	S197L	tCa	tTa	1	1	B.1.571	0.009709
N	197	S197P	Tca	Cca	1	1	B.1.575	0.000303
N	197	S197del	TCA	---	1	1	B.1.576	0.000907
N	197	S197P	Tca	Cca	1	1	B.1.588	0.00091
N	197	S197L	tCa	tTa	1	1	B.1.595	0.000261
N	197	S197del	TCA	---	1	1	B.1.596	0.000087
N	197	S197S	tcA	tcG	1	1	B.1.596	0.000087
N	197	S197P	Tca	Cca	1	1	B.1.609	0.000479
N	197	S197T	Tca	Aca	1	1	B.1.609	0.000479
N	197	S197S	tcA	tcG	1	1	B.1.617.1	0.000129
N	197	S197del	TCA	---	1	1	B.1.617.1	0.000129
N	197	S197del	TCA	---	1	1	B.1.617.2	0.000004
N	197	S197A	Tca	Gca	1	1	B.1.617.2	0.000004
N	197	S197S	tcA	tcT	1	1	B.1.621	0.000089
N	197	S197X	tCa	tAa	1	1	B.1.623	0.000536
N	197	S197L	tCa	tTa	1	1	B.1.623	0.000536
N	197	S197L	tCa	tTa	1	1	B.1.633	0.041667
N	197	S197L	tCa	tTa	1	1	B.26	0.014706
N	197	S197S	tcA	tcT	1	1	B.4	0.002208
N	197	S197S	tcA	tcG	1	1	B.55	0.00295
N	197	S197X	tCa	tGa	1	1	B.6.6	0.000889
N	197	S197A	Tca	Gca	1	1	C.35	0.000774
N	197	S197del	TCA	---	1	1	C.37.1	0.002618
N	197	S197X	tCa	tGa	1	1	D.2	0.000075
N	197	S197T	Tca	Aca	1	1	P.1	0.000016
N	197	S197del	TCA	---	1	1	P.1	0.000016
N	197	S197P	Tca	Cca	1	1	P.1	0.000016
N	197	S197S	tcA	tcG	1	1	P.1	0.000016
N	197	S197del	TCA	---	1	1	P.1.14	0.000048
N	197	S197del	TCA	---	1	1	P.1.8	0.004785
N	197	S197S	tcA	tcG	1	1	P.2	0.000187
N	197	S197T	Tca	Aca	1	1	Q.2	0.000613

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.