CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 193 | S193I | nonsyn | aGt | aTt | 9107 | 9106 | 0.99989 | 28850-28852 | |
N | 193 | S193I | nonsyn | aGT | aTC | 9107 | 1 | 0.000109806 | 28850-28852 | |
N | 193 | S193T | nonsyn | aGt | aCt | 1560 | 1558 | 0.998718 | 28850-28852 | |
N | 193 | S193T | nonsyn | aGT | aCA | 1560 | 1 | 0.000641026 | 28850-28852 | |
N | 193 | S193T | nonsyn | aGT | aCC | 1560 | 1 | 0.000641026 | 28850-28852 | |
N | 193 | S193N | nonsyn | aGt | aAt | 533 | 529 | 0.992495 | 28850-28852 | |
N | 193 | S193N | nonsyn | aGT | aAC | 533 | 4 | 0.00750469 | 28850-28852 | |
N | 193 | S193G | nonsyn | Agt | Ggt | 228 | 228 | 1 | 28850-28852 | |
N | 193 | S193S | syn | agT | agC | 207 | 207 | 1 | 28850-28852 | |
N | 193 | S193R | nonsyn | agT | agG | 188 | 175 | 0.930851 | 28850-28852 | |
N | 193 | S193R | nonsyn | Agt | Cgt | 188 | 10 | 0.0531915 | 28850-28852 | |
N | 193 | S193R | nonsyn | agT | agA | 188 | 3 | 0.0159574 | 28850-28852 | |
N | 193 | S193del | del | AGT | --- | 81 | 81 | 1 | 28850-28852 | |
N | 193 | S193C | nonsyn | Agt | Tgt | 79 | 79 | 1 | 28850-28852 | |
N | 193 | S193del1 | del | agT | ag- | 77 | 75 | 0.974026 | 28850-28852 | |
N | 193 | S193del1 | del | AGt | -Tt | 77 | 1 | 0.012987 | 28850-28852 | |
N | 193 | S193del1 | del | aGT | a-N | 77 | 1 | 0.012987 | 28850-28852 | |
N | 193 | S193del2 | del | AGT | G-- | 7 | 5 | 0.714286 | 28850-28852 | |
N | 193 | S193del2 | del | AGt | --t | 7 | 1 | 0.142857 | 28850-28852 | |
N | 193 | S193del2 | del | aGT | a-- | 7 | 1 | 0.142857 | 28850-28852 | |
N | 193 | S193V | nonsyn | AGt | GTt | 1 | 1 | 1 | 28850-28852 | |
N | 193 | S193L | nonsyn | AGt | CTt | 1 | 1 | 1 | 28850-28852 | |
N | 193 | S193F | nonsyn | AGt | TTt | 1 | 1 | 1 | 28850-28852 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 193 | S193I | aGt | aTt | 9106 | 9107 | All | 0.001742 |
N | 193 | S193I | aGT | aTC | 1 | 9107 | All | 0 |
N | 193 | S193T | aGt | aCt | 1558 | 1560 | All | 0.000298 |
N | 193 | S193T | aGT | aCC | 1 | 1560 | All | 0 |
N | 193 | S193T | aGT | aCA | 1 | 1560 | All | 0 |
N | 193 | S193I | aGt | aTt | 1325 | 1325 | B.1.258 | 0.088175 |
N | 193 | S193I | aGt | aTt | 816 | 816 | AY.44 | 0.004967 |
N | 193 | S193I | aGt | aTt | 603 | 603 | B.3.1 | 1 |
N | 193 | S193I | aGt | aTt | 542 | 542 | AY.5 | 0.011192 |
N | 193 | S193N | aGt | aAt | 529 | 533 | All | 0.000101 |
N | 193 | S193N | aGT | aAC | 4 | 533 | All | 0.000001 |
N | 193 | S193I | aGt | aTt | 510 | 510 | AY.4 | 0.000794 |
N | 193 | S193I | aGt | aTt | 454 | 454 | B.1.617.2 | 0.001709 |
N | 193 | S193I | aGt | aTt | 405 | 405 | B.1.1.7 | 0.000363 |
N | 193 | S193T | aGt | aCt | 401 | 402 | B.1.1.7 | 0.000359 |
N | 193 | S193T | aGT | aCC | 1 | 402 | B.1.1.7 | 0.000001 |
N | 193 | S193I | aGt | aTt | 247 | 247 | B.1.1 | 0.004481 |
N | 193 | S193I | aGt | aTt | 237 | 237 | AY.103 | 0.001472 |
N | 193 | S193I | aGt | aTt | 236 | 236 | B.1.221.4 | 0.983333 |
N | 193 | S193G | Agt | Ggt | 228 | 228 | All | 0.000044 |
N | 193 | S193I | aGt | aTt | 225 | 225 | AY.3 | 0.002238 |
N | 193 | S193I | aGt | aTt | 211 | 211 | AY.25 | 0.001269 |
N | 193 | S193S | agT | agC | 207 | 207 | All | 0.00004 |
N | 193 | S193I | aGt | aTt | 206 | 206 | AY.43 | 0.000913 |
N | 193 | S193I | aGt | aTt | 202 | 202 | B.1 | 0.00185 |
N | 193 | S193R | agT | agG | 175 | 188 | All | 0.000033 |
N | 193 | S193R | Agt | Cgt | 10 | 188 | All | 0.000002 |
N | 193 | S193R | agT | agA | 3 | 188 | All | 0.000001 |
N | 193 | S193I | aGt | aTt | 154 | 154 | B.1.416 | 0.195431 |
N | 193 | S193R | agT | agG | 144 | 145 | AY.4 | 0.000224 |
N | 193 | S193R | Agt | Cgt | 1 | 145 | AY.4 | 0.000002 |
N | 193 | S193I | aGt | aTt | 142 | 142 | B.1.575 | 0.043083 |
N | 193 | S193T | aGt | aCt | 131 | 131 | AY.43 | 0.00058 |
N | 193 | S193T | aGt | aCt | 129 | 129 | AY.4 | 0.000201 |
N | 193 | S193I | aGt | aTt | 118 | 118 | B.1.1.219 | 0.59 |
N | 193 | S193G | Agt | Ggt | 117 | 117 | AY.6 | 0.004812 |
N | 193 | S193I | aGt | aTt | 106 | 106 | AY.98.1 | 0.005134 |
N | 193 | S193I | aGt | aTt | 103 | 103 | B.1.595 | 0.026879 |
N | 193 | S193T | aGt | aCt | 99 | 99 | AY.44 | 0.000603 |
N | 193 | S193I | aGt | aTt | 90 | 90 | B.1.385 | 0.957447 |
N | 193 | S193T | aGt | aCt | 86 | 86 | B.1.617.2 | 0.000324 |
N | 193 | S193del | AGT | --- | 81 | 81 | All | 0.000015 |
N | 193 | S193C | Agt | Tgt | 79 | 79 | All | 0.000015 |
N | 193 | S193I | aGt | aTt | 78 | 78 | B.1.160 | 0.002433 |
N | 193 | S193T | aGt | aCt | 78 | 78 | B.1.9.5 | 0.443182 |
N | 193 | S193del1 | agT | ag- | 75 | 77 | All | 0.000014 |
N | 193 | S193del1 | aGT | a-N | 1 | 77 | All | 0 |
N | 193 | S193del1 | AGt | -Tt | 1 | 77 | All | 0 |
N | 193 | S193S | agT | agC | 72 | 72 | B.1.617.2 | 0.000271 |
N | 193 | S193I | aGt | aTt | 72 | 72 | P.1 | 0.001134 |
N | 193 | S193T | aGt | aCt | 66 | 66 | AY.14 | 0.005809 |
N | 193 | S193T | aGt | aCt | 63 | 63 | B.1.2 | 0.000555 |
N | 193 | S193del1 | agT | ag- | 61 | 62 | B.1.1.7 | 0.000055 |
N | 193 | S193del1 | aGT | a-N | 1 | 62 | B.1.1.7 | 0.000001 |
N | 193 | S193I | aGt | aTt | 62 | 62 | B.1.459 | 0.253061 |
N | 193 | S193I | aGt | aTt | 62 | 62 | B.1.621.1 | 0.031361 |
N | 193 | S193I | aGt | aTt | 57 | 57 | B.1.2 | 0.000502 |
N | 193 | S193I | aGt | aTt | 55 | 55 | B.1.429 | 0.001294 |
N | 193 | S193N | aGt | aAt | 52 | 52 | AY.20 | 0.002021 |
N | 193 | S193T | aGt | aCt | 51 | 51 | AY.29 | 0.000804 |
N | 193 | S193C | Agt | Tgt | 51 | 51 | AY.4 | 0.000079 |
N | 193 | S193N | aGt | aAt | 47 | 47 | B.1.1.7 | 0.000042 |
N | 193 | S193N | aGt | aAt | 42 | 43 | B.1 | 0.000385 |
N | 193 | S193N | aGT | aAC | 1 | 43 | B.1 | 0.000009 |
N | 193 | S193T | aGt | aCt | 42 | 42 | AY.3 | 0.000418 |
N | 193 | S193I | aGt | aTt | 42 | 42 | AY.33 | 0.002805 |
N | 193 | S193I | aGt | aTt | 41 | 41 | AY.47 | 0.001275 |
N | 193 | S193I | aGt | aTt | 40 | 40 | AY.100 | 0.00184 |
N | 193 | S193I | aGt | aTt | 39 | 39 | B.1.177 | 0.000514 |
N | 193 | S193I | aGt | aTt | 36 | 36 | AY.102 | 0.000955 |
N | 193 | S193N | aGt | aAt | 34 | 34 | AY.4 | 0.000053 |
N | 193 | S193I | aGt | aTt | 33 | 33 | C.36 | 0.030055 |
N | 193 | S193I | aGt | aTt | 32 | 32 | AY.23 | 0.002232 |
N | 193 | S193I | aGt | aTt | 31 | 31 | B.1.177.81 | 0.005869 |
N | 193 | S193I | aGt | aTt | 30 | 30 | AY.114 | 0.006933 |
N | 193 | S193N | aGt | aAt | 30 | 30 | AY.44 | 0.000183 |
N | 193 | S193I | aGt | aTt | 30 | 30 | B.61 | 0.172414 |
N | 193 | S193I | aGt | aTt | 29 | 29 | AY.109 | 0.02145 |
N | 193 | S193I | aGt | aTt | 29 | 29 | AY.4.2 | 0.000629 |
N | 193 | S193I | aGt | aTt | 29 | 29 | B.1.1.28 | 0.009026 |
N | 193 | S193I | aGt | aTt | 29 | 29 | B.1.36 | 0.004231 |
N | 193 | S193I | aGt | aTt | 28 | 28 | AY.46 | 0.002914 |
N | 193 | S193I | aGt | aTt | 26 | 26 | AY.20 | 0.00101 |
N | 193 | S193N | aGt | aAt | 26 | 26 | B.1.1.70 | 0.008868 |
N | 193 | S193I | aGt | aTt | 26 | 26 | B.1.427 | 0.001313 |
N | 193 | S193I | aGt | aTt | 25 | 25 | AY.34 | 0.002424 |
N | 193 | S193S | agT | agC | 25 | 25 | AY.4 | 0.000039 |
N | 193 | S193I | aGt | aTt | 25 | 25 | AY.99.2 | 0.002304 |
N | 193 | S193I | aGt | aTt | 24 | 24 | AY.39 | 0.000593 |
N | 193 | S193G | Agt | Ggt | 24 | 24 | B.1.1.7 | 0.000021 |
N | 193 | S193T | aGt | aCt | 23 | 23 | AY.103 | 0.000143 |
N | 193 | S193I | aGt | aTt | 23 | 23 | AY.46.6 | 0.001661 |
N | 193 | S193N | aGt | aAt | 23 | 23 | B.1.325 | 0.158621 |
N | 193 | S193T | aGt | aCt | 22 | 22 | B.1.1.50 | 0.014936 |
N | 193 | S193N | aGt | aAt | 22 | 22 | B.1.617.2 | 0.000083 |
N | 193 | S193I | aGt | aTt | 21 | 21 | B.1.1.121 | 0.050971 |
N | 193 | S193I | aGt | aTt | 21 | 21 | B.1.1.519 | 0.000834 |
N | 193 | S193N | aGt | aAt | 21 | 21 | B.1.595 | 0.00548 |
N | 193 | S193R | agT | agG | 21 | 21 | B.1.617.2 | 0.000079 |
N | 193 | S193N | aGt | aAt | 20 | 20 | AY.120 | 0.000744 |
N | 193 | S193I | aGt | aTt | 20 | 20 | AY.61 | 0.002096 |
N | 193 | S193I | aGt | aTt | 20 | 20 | B.1.1.50 | 0.013578 |
N | 193 | S193T | aGt | aCt | 19 | 19 | AY.100 | 0.000874 |
N | 193 | S193I | aGt | aTt | 19 | 19 | AY.121 | 0.002571 |
N | 193 | S193I | aGt | aTt | 19 | 19 | AY.29 | 0.0003 |
N | 193 | S193N | aGt | aAt | 19 | 19 | AY.39 | 0.00047 |
N | 193 | S193I | aGt | aTt | 19 | 19 | B.1.177.36 | 0.306452 |
N | 193 | S193I | aGt | aTt | 19 | 19 | B.1.221 | 0.00135 |
N | 193 | S193T | aGt | aCt | 19 | 19 | P.1 | 0.000299 |
N | 193 | S193I | aGt | aTt | 19 | 19 | P.1.14 | 0.000908 |
N | 193 | S193I | aGt | aTt | 18 | 18 | B.1.588.1 | 0.692308 |
N | 193 | S193T | aGt | aCt | 18 | 18 | B.40 | 0.006557 |
N | 193 | S193I | aGt | aTt | 17 | 17 | AY.6 | 0.000699 |
N | 193 | S193T | aGt | aCt | 17 | 17 | AY.62 | 0.007407 |
N | 193 | S193I | aGt | aTt | 17 | 17 | B.1.400 | 0.007293 |
N | 193 | S193I | aGt | aTt | 17 | 17 | B.1.526 | 0.0004 |
N | 193 | S193S | agT | agC | 16 | 16 | AY.14 | 0.001408 |
N | 193 | S193I | aGt | aTt | 16 | 16 | AY.4.3 | 0.013468 |
N | 193 | S193T | aGt | aCt | 16 | 16 | B.1.1.317 | 0.006587 |
N | 193 | S193N | aGt | aAt | 16 | 16 | B.1.2 | 0.000141 |
N | 193 | S193T | aGt | aCt | 16 | 16 | B.1.429 | 0.000376 |
N | 193 | S193I | aGt | aTt | 16 | 16 | B.3 | 0.013289 |
N | 193 | S193I | aGt | aTt | 15 | 15 | AY.4.5 | 0.001612 |
N | 193 | S193I | aGt | aTt | 15 | 15 | B.1.619 | 0.013066 |
N | 193 | S193T | aGt | aCt | 14 | 14 | AY.102 | 0.000371 |
N | 193 | S193I | aGt | aTt | 14 | 14 | B.1.617.1 | 0.001806 |
N | 193 | S193I | aGt | aTt | 14 | 14 | B.1.621 | 0.001239 |
N | 193 | S193I | aGt | aTt | 13 | 13 | AY.113 | 0.001851 |
N | 193 | S193T | aGt | aCt | 13 | 13 | B.1 | 0.000119 |
N | 193 | S193T | aGt | aCt | 13 | 13 | B.1.1 | 0.000236 |
N | 193 | S193G | Agt | Ggt | 13 | 13 | B.1.2 | 0.000114 |
N | 193 | S193I | aGt | aTt | 13 | 13 | B.1.234 | 0.001715 |
N | 193 | S193I | aGt | aTt | 12 | 12 | AY.120 | 0.000446 |
N | 193 | S193I | aGt | aTt | 12 | 12 | AY.26 | 0.00034 |
N | 193 | S193del | AGT | --- | 12 | 12 | AY.6 | 0.000494 |
N | 193 | S193I | aGt | aTt | 12 | 12 | AY.9.2 | 0.000441 |
N | 193 | S193del | AGT | --- | 12 | 12 | B.1 | 0.00011 |
N | 193 | S193I | aGt | aTt | 12 | 12 | B.1.1.291 | 0.008909 |
N | 193 | S193I | aGt | aTt | 12 | 12 | B.1.243 | 0.000835 |
N | 193 | S193I | aGt | aTt | 12 | 12 | B.1.332 | 0.041958 |
N | 193 | S193N | aGt | aAt | 12 | 12 | B.40 | 0.004372 |
N | 193 | S193N | aGt | aAt | 11 | 11 | AY.25 | 0.000066 |
N | 193 | S193G | Agt | Ggt | 11 | 11 | AY.4 | 0.000017 |
N | 193 | S193S | agT | agC | 11 | 11 | AY.43 | 0.000049 |
N | 193 | S193N | aGt | aAt | 11 | 11 | AY.47 | 0.000342 |
N | 193 | S193S | agT | agC | 11 | 11 | B | 0.001406 |
N | 193 | S193I | aGt | aTt | 11 | 11 | B | 0.001406 |
N | 193 | S193T | aGt | aCt | 10 | 10 | AY.20 | 0.000389 |
N | 193 | S193I | aGt | aTt | 10 | 10 | AY.41 | 0.002939 |
N | 193 | S193I | aGt | aTt | 10 | 10 | AY.9.1 | 0.000837 |
N | 193 | S193N | aGt | aAt | 10 | 10 | B.1.1.214 | 0.000555 |
N | 193 | S193I | aGt | aTt | 10 | 10 | B.1.1.322 | 0.087719 |
N | 193 | S193I | aGt | aTt | 10 | 10 | B.1.1.37 | 0.001929 |
N | 193 | S193N | aGt | aAt | 10 | 10 | B.1.243 | 0.000696 |
N | 193 | S193I | aGt | aTt | 9 | 9 | AY.117 | 0.000761 |
N | 193 | S193I | aGt | aTt | 9 | 9 | AY.36 | 0.001334 |
N | 193 | S193T | aGt | aCt | 9 | 9 | AY.39 | 0.000222 |
N | 193 | S193I | aGt | aTt | 9 | 9 | AY.42 | 0.000362 |
N | 193 | S193I | aGt | aTt | 9 | 9 | AY.98 | 0.000711 |
N | 193 | S193N | aGt | aAt | 9 | 9 | B.1.1.519 | 0.000357 |
N | 193 | S193del | AGT | --- | 9 | 9 | B.1.1.7 | 0.000008 |
N | 193 | S193T | aGt | aCt | 9 | 9 | B.1.525 | 0.001018 |
N | 193 | S193I | aGt | aTt | 8 | 8 | AY.14 | 0.000704 |
N | 193 | S193I | aGt | aTt | 8 | 8 | AY.21 | 0.01518 |
N | 193 | S193N | aGt | aAt | 8 | 8 | AY.3.1 | 0.000682 |
N | 193 | S193T | aGt | aCt | 8 | 8 | AY.47 | 0.000249 |
N | 193 | S193I | aGt | aTt | 8 | 8 | AY.71 | 0.0038 |
N | 193 | S193I | aGt | aTt | 8 | 8 | B.1.1.174 | 0.027027 |
N | 193 | S193I | aGt | aTt | 8 | 8 | B.1.568 | 0.008889 |
N | 193 | S193I | aGt | aTt | 8 | 8 | B.1.609 | 0.003835 |
N | 193 | S193T | aGt | aCt | 8 | 8 | B.1.621 | 0.000708 |
N | 193 | S193I | aGt | aTt | 8 | 8 | B.1.628 | 0.002819 |
N | 193 | S193I | aGt | aTt | 8 | 8 | R.1 | 0.00072 |
N | 193 | S193del2 | AGT | G-- | 5 | 7 | All | 0.000001 |
N | 193 | S193del2 | aGT | a-- | 1 | 7 | All | 0 |
N | 193 | S193del2 | AGt | --t | 1 | 7 | All | 0 |
N | 193 | S193I | aGt | aTt | 7 | 7 | AY.12 | 0.002212 |
N | 193 | S193del | AGT | --- | 7 | 7 | AY.25 | 0.000042 |
N | 193 | S193N | aGt | aAt | 7 | 7 | AY.26 | 0.000198 |
N | 193 | S193I | aGt | aTt | 7 | 7 | AY.45 | 0.000852 |
N | 193 | S193N | aGt | aAt | 7 | 7 | AY.46.6 | 0.000505 |
N | 193 | S193I | aGt | aTt | 7 | 7 | AY.5.4 | 0.001937 |
N | 193 | S193I | aGt | aTt | 7 | 7 | AY.7.2 | 0.003915 |
N | 193 | S193G | Agt | Ggt | 7 | 7 | B.1 | 0.000064 |
N | 193 | S193I | aGt | aTt | 7 | 7 | B.1.1.326 | 0.012324 |
N | 193 | S193S | agT | agC | 7 | 7 | B.1.221 | 0.000497 |
N | 193 | S193T | aGt | aCt | 7 | 7 | B.1.235 | 0.017632 |
N | 193 | S193I | aGt | aTt | 7 | 7 | B.1.236 | 0.014374 |
N | 193 | S193I | aGt | aTt | 7 | 7 | B.1.351 | 0.000208 |
N | 193 | S193I | aGt | aTt | 7 | 7 | B.1.475 | 1 |
N | 193 | S193I | aGt | aTt | 7 | 7 | B.1.596 | 0.00061 |
N | 193 | S193I | aGt | aTt | 7 | 7 | C.36.3 | 0.003971 |
N | 193 | S193T | aGt | aCt | 6 | 6 | A.2.5 | 0.002994 |
N | 193 | S193I | aGt | aTt | 6 | 6 | AY.119 | 0.000212 |
N | 193 | S193T | aGt | aCt | 6 | 6 | AY.120 | 0.000223 |
N | 193 | S193I | aGt | aTt | 6 | 6 | AY.38 | 0.002996 |
N | 193 | S193T | aGt | aCt | 6 | 6 | AY.5 | 0.000124 |
N | 193 | S193I | aGt | aTt | 6 | 6 | AY.67 | 0.002786 |
N | 193 | S193I | aGt | aTt | 6 | 6 | AY.70 | 0.001251 |
N | 193 | S193del | AGT | --- | 6 | 6 | B.1.1 | 0.000109 |
N | 193 | S193T | aGt | aCt | 6 | 6 | B.1.1.222 | 0.001224 |
N | 193 | S193I | aGt | aTt | 6 | 6 | B.1.1.306 | 0.00263 |
N | 193 | S193del2 | AGT | G-- | 5 | 6 | B.1.1.7 | 0.000004 |
N | 193 | S193del2 | AGt | --t | 1 | 6 | B.1.1.7 | 0.000001 |
N | 193 | S193I | aGt | aTt | 6 | 6 | B.1.1.70 | 0.002046 |
N | 193 | S193I | aGt | aTt | 6 | 6 | B.1.456 | 0.019608 |
N | 193 | S193I | aGt | aTt | 6 | 6 | B.1.525 | 0.000679 |
N | 193 | S193I | aGt | aTt | 6 | 6 | B.31 | 0.022388 |
N | 193 | S193I | aGt | aTt | 6 | 6 | C.37 | 0.000696 |
N | 193 | S193I | aGt | aTt | 6 | 6 | D.2 | 0.00045 |
N | 193 | S193I | aGt | aTt | 6 | 6 | P.2 | 0.00112 |
N | 193 | S193I | aGt | aTt | 5 | 5 | AY.106 | 0.001674 |
N | 193 | S193I | aGt | aTt | 5 | 5 | AY.116.1 | 0.001557 |
N | 193 | S193I | aGt | aTt | 5 | 5 | AY.16 | 0.001898 |
N | 193 | S193I | aGt | aTt | 5 | 5 | AY.27 | 0.000324 |
N | 193 | S193I | aGt | aTt | 5 | 5 | AY.3.1 | 0.000426 |
N | 193 | S193G | Agt | Ggt | 5 | 5 | AY.43 | 0.000022 |
N | 193 | S193I | aGt | aTt | 5 | 5 | AY.46.4 | 0.000823 |
N | 193 | S193I | aGt | aTt | 5 | 5 | AY.62 | 0.002179 |
N | 193 | S193S | agT | agC | 5 | 5 | B.1.1.128 | 0.035461 |
N | 193 | S193T | aGt | aCt | 5 | 5 | B.1.1.28 | 0.001556 |
N | 193 | S193I | aGt | aTt | 5 | 5 | B.1.1.305 | 0.019305 |
N | 193 | S193N | aGt | aAt | 5 | 5 | B.1.1.318 | 0.001509 |
N | 193 | S193I | aGt | aTt | 5 | 5 | B.1.1.420 | 0.00503 |
N | 193 | S193S | agT | agC | 5 | 5 | B.1.1.434 | 0.001743 |
N | 193 | S193S | agT | agC | 5 | 5 | B.1.177.72 | 0.016949 |
N | 193 | S193I | aGt | aTt | 5 | 5 | B.1.258.17 | 0.00052 |
N | 193 | S193I | aGt | aTt | 5 | 5 | B.1.260 | 0.016722 |
N | 193 | S193T | aGt | aCt | 5 | 5 | B.1.284 | 0.065789 |
N | 193 | S193T | aGt | aCt | 5 | 5 | B.1.305 | 0.010753 |
N | 193 | S193I | aGt | aTt | 5 | 5 | B.1.396 | 0.003529 |
N | 193 | S193N | aGt | aAt | 5 | 5 | B.1.429 | 0.000118 |
N | 193 | S193T | aGt | aCt | 5 | 5 | B.1.438.1 | 0.000536 |
N | 193 | S193I | aGt | aTt | 5 | 5 | B.1.462 | 0.036232 |
N | 193 | S193G | Agt | Ggt | 5 | 5 | B.1.526 | 0.000118 |
N | 193 | S193N | aGt | aAt | 5 | 5 | P.1 | 0.000079 |
N | 193 | S193I | aGt | aTt | 5 | 5 | P.1.1 | 0.001588 |
N | 193 | S193T | aGt | aCt | 5 | 5 | P.1.14 | 0.000239 |
N | 193 | S193I | aGt | aTt | 4 | 4 | AD.2 | 0.000876 |
N | 193 | S193N | aGt | aAt | 4 | 4 | AY.102 | 0.000106 |
N | 193 | S193N | aGt | aAt | 4 | 4 | AY.103 | 0.000025 |
N | 193 | S193I | aGt | aTt | 4 | 4 | AY.120.1 | 0.001284 |
N | 193 | S193T | aGt | aCt | 4 | 4 | AY.25 | 0.000024 |
N | 193 | S193N | aGt | aAt | 4 | 4 | AY.43 | 0.000018 |
N | 193 | S193I | aGt | aTt | 4 | 4 | AY.75.1 | 0.000721 |
N | 193 | S193I | aGt | aTt | 4 | 4 | AY.93 | 0.001092 |
N | 193 | S193N | aGt | aAt | 4 | 4 | B.1.1 | 0.000073 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.1.161 | 0.014134 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.1.294 | 0.005063 |
N | 193 | S193T | aGt | aCt | 4 | 4 | B.1.1.63 | 0.001543 |
N | 193 | S193S | agT | agC | 4 | 4 | B.1.1.7 | 0.000004 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.104 | 0.01476 |
N | 193 | S193N | aGt | aAt | 4 | 4 | B.1.212 | 0.066667 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.258.14 | 0.003922 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.281 | 0.086957 |
N | 193 | S193T | aGt | aCt | 4 | 4 | B.1.351.3 | 0.003506 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.356 | 0.006908 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.36.29 | 0.002069 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.466.2 | 0.001565 |
N | 193 | S193T | aGt | aCt | 4 | 4 | B.1.470 | 0.005618 |
N | 193 | S193T | aGt | aCt | 4 | 4 | B.1.526 | 0.000094 |
N | 193 | S193I | aGt | aTt | 4 | 4 | B.1.582 | 0.001963 |
N | 193 | S193C | Agt | Tgt | 4 | 4 | B.1.617.2 | 0.000015 |
N | 193 | S193N | aGt | aAt | 4 | 4 | C.37 | 0.000464 |
N | 193 | S193T | aGt | aCt | 4 | 4 | Q.8 | 0.00066 |
N | 193 | S193S | agT | agC | 4 | 4 | R.1 | 0.00036 |
N | 193 | S193I | aGt | aTt | 3 | 3 | A.21 | 0.00831 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.1 | 0.001187 |
N | 193 | S193T | aGt | aCt | 3 | 3 | AY.119 | 0.000106 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.16.1 | 0.00141 |
N | 193 | S193N | aGt | aAt | 2 | 3 | AY.3 | 0.00002 |
N | 193 | S193N | aGT | aAC | 1 | 3 | AY.3 | 0.00001 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.32 | 0.001597 |
N | 193 | S193T | aGt | aCt | 3 | 3 | AY.34 | 0.000291 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.34.1 | 0.00153 |
N | 193 | S193R | agT | agG | 3 | 3 | AY.39 | 0.000074 |
N | 193 | S193del | AGT | --- | 3 | 3 | AY.4 | 0.000005 |
N | 193 | S193C | Agt | Tgt | 3 | 3 | AY.43 | 0.000013 |
N | 193 | S193S | agT | agC | 3 | 3 | AY.44 | 0.000018 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.53 | 0.000863 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.55 | 0.002752 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.72 | 0.004082 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.74 | 0.000347 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.75 | 0.000168 |
N | 193 | S193N | aGt | aAt | 2 | 3 | AY.75 | 0.000112 |
N | 193 | S193N | aGT | aAC | 1 | 3 | AY.75 | 0.000056 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.87 | 0.002498 |
N | 193 | S193I | aGt | aTt | 3 | 3 | AY.88 | 0.002653 |
N | 193 | S193G | Agt | Ggt | 3 | 3 | AY.9 | 0.000203 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.1 | 0.00098 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.107 | 0.096774 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.214 | 0.000166 |
N | 193 | S193T | aGt | aCt | 3 | 3 | B.1.1.214 | 0.000166 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.25 | 0.001706 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.277 | 0.002276 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.318 | 0.000905 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.355 | 0.046154 |
N | 193 | S193T | aGt | aCt | 3 | 3 | B.1.1.519 | 0.000119 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.1.89 | 0.018182 |
N | 193 | S193del1 | agT | ag- | 3 | 3 | B.1.177.82 | 0.001432 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.240 | 0.000647 |
N | 193 | S193T | aGt | aCt | 3 | 3 | B.1.243 | 0.000209 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.293 | 0.0375 |
N | 193 | S193del1 | agT | ag- | 3 | 3 | B.1.351 | 0.000089 |
N | 193 | S193N | aGt | aAt | 3 | 3 | B.1.36.29 | 0.001552 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.367 | 0.002377 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.416.1 | 0.004687 |
N | 193 | S193S | agT | agC | 3 | 3 | B.1.427 | 0.000151 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.565 | 0.002431 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.576 | 0.00272 |
N | 193 | S193T | aGt | aCt | 3 | 3 | B.1.596 | 0.000261 |
N | 193 | S193S | agT | agC | 3 | 3 | B.1.637 | 0.000219 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.1.9.5 | 0.017045 |
N | 193 | S193I | aGt | aTt | 3 | 3 | B.4 | 0.006623 |
N | 193 | S193N | aGt | aAt | 3 | 3 | C.35 | 0.002322 |
N | 193 | S193T | aGt | aCt | 3 | 3 | C.37 | 0.000348 |
N | 193 | S193del | AGT | --- | 3 | 3 | P.1 | 0.000047 |
N | 193 | S193I | aGt | aTt | 3 | 3 | P.1.10 | 0.000808 |
N | 193 | S193I | aGt | aTt | 3 | 3 | Q.8 | 0.000495 |
N | 193 | S193R | agT | agG | 1 | 2 | 0.055556 | |
N | 193 | S193R | agT | agA | 1 | 2 | 0.055556 | |
N | 193 | S193T | aGt | aCt | 1 | 2 | 0.055556 | |
N | 193 | S193T | aGT | aCA | 1 | 2 | 0.055556 | |
N | 193 | S193I | aGt | aTt | 2 | 2 | A.1 | 0.000564 |
N | 193 | S193C | Agt | Tgt | 2 | 2 | AY.103 | 0.000012 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | AY.103 | 0.000012 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.111 | 0.000366 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.116 | 0.000574 |
N | 193 | S193N | aGt | aAt | 2 | 2 | AY.117 | 0.000169 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.118 | 0.000125 |
N | 193 | S193C | Agt | Tgt | 2 | 2 | AY.12 | 0.000632 |
N | 193 | S193T | aGt | aCt | 2 | 2 | AY.120.1 | 0.000642 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.120.2 | 0.002571 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.120.2.1 | 0.000997 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.13 | 0.000322 |
N | 193 | S193S | agT | agC | 2 | 2 | AY.20 | 0.000078 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | AY.26 | 0.000057 |
N | 193 | S193N | aGt | aAt | 2 | 2 | AY.27 | 0.000129 |
N | 193 | S193N | aGt | aAt | 2 | 2 | AY.29 | 0.000032 |
N | 193 | S193S | agT | agC | 2 | 2 | AY.3 | 0.00002 |
N | 193 | S193T | aGt | aCt | 2 | 2 | AY.3.1 | 0.000171 |
N | 193 | S193T | aGt | aCt | 2 | 2 | AY.30 | 0.000791 |
N | 193 | S193T | aGt | aCt | 2 | 2 | AY.33 | 0.000134 |
N | 193 | S193S | agT | agC | 2 | 2 | AY.34 | 0.000194 |
N | 193 | S193N | aGt | aAt | 2 | 2 | AY.34 | 0.000194 |
N | 193 | S193del | AGT | --- | 2 | 2 | AY.40 | 0.001929 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.40 | 0.001929 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | AY.42 | 0.00008 |
N | 193 | S193R | agT | agG | 2 | 2 | AY.43 | 0.000009 |
N | 193 | S193R | Agt | Cgt | 1 | 2 | AY.44 | 0.000006 |
N | 193 | S193R | agT | agG | 1 | 2 | AY.44 | 0.000006 |
N | 193 | S193N | aGt | aAt | 2 | 2 | AY.46.5 | 0.000397 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.46.5 | 0.000397 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | AY.5 | 0.000041 |
N | 193 | S193T | aGt | aCt | 2 | 2 | AY.50 | 0.001599 |
N | 193 | S193del | AGT | --- | 2 | 2 | AY.50 | 0.001599 |
N | 193 | S193del1 | agT | ag- | 2 | 2 | AY.52 | 0.001629 |
N | 193 | S193T | aGt | aCt | 2 | 2 | AY.53 | 0.000575 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.56 | 0.00321 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.59 | 0.001059 |
N | 193 | S193N | aGt | aAt | 2 | 2 | AY.6 | 0.000082 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.68 | 0.000547 |
N | 193 | S193T | aGt | aCt | 2 | 2 | AY.75 | 0.000112 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.81 | 0.003984 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.84 | 0.000875 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.9 | 0.000135 |
N | 193 | S193del | AGT | --- | 2 | 2 | AY.9.2 | 0.000073 |
N | 193 | S193C | Agt | Tgt | 2 | 2 | AY.91 | 0.001461 |
N | 193 | S193I | aGt | aTt | 2 | 2 | AY.99 | 0.002099 |
N | 193 | S193C | Agt | Tgt | 2 | 2 | B.1 | 0.000018 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.159 | 0.009346 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.189 | 0.003026 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.203 | 0.033898 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.208 | 0.02439 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.269 | 0.002706 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.284 | 0.000215 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.317 | 0.000823 |
N | 193 | S193T | aGt | aCt | 2 | 2 | B.1.1.33 | 0.000842 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.398 | 0.006452 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.416 | 0.00181 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.444 | 0.285714 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.528 | 0.009615 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.1.63 | 0.000772 |
N | 193 | S193C | Agt | Tgt | 2 | 2 | B.1.1.7 | 0.000002 |
N | 193 | S193del1 | agT | ag- | 2 | 2 | B.1.160 | 0.000062 |
N | 193 | S193T | aGt | aCt | 2 | 2 | B.1.160 | 0.000062 |
N | 193 | S193del | AGT | --- | 2 | 2 | B.1.177 | 0.000026 |
N | 193 | S193T | aGt | aCt | 2 | 2 | B.1.177.17 | 0.001642 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.177.33 | 0.003289 |
N | 193 | S193T | aGt | aCt | 2 | 2 | B.1.177.50 | 0.00939 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.177.57 | 0.000562 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.177.60 | 0.000437 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.177.79 | 0.004684 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.189 | 0.008584 |
N | 193 | S193S | agT | agC | 2 | 2 | B.1.2 | 0.000018 |
N | 193 | S193N | aGt | aAt | 2 | 2 | B.1.210 | 0.004264 |
N | 193 | S193T | aGt | aCt | 2 | 2 | B.1.221 | 0.000142 |
N | 193 | S193N | aGt | aAt | 2 | 2 | B.1.258 | 0.000133 |
N | 193 | S193T | aGt | aCt | 2 | 2 | B.1.258 | 0.000133 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.265 | 0.002541 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.279 | 0.001027 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.320 | 0.002491 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.344 | 0.016393 |
N | 193 | S193C | Agt | Tgt | 2 | 2 | B.1.351 | 0.000059 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.351.2 | 0.000605 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.351.3 | 0.001753 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | B.1.565 | 0.001621 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | B.1.595 | 0.000522 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | B.1.617.2 | 0.000008 |
N | 193 | S193C | Agt | Tgt | 2 | 2 | B.1.637 | 0.000146 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.1.637 | 0.000146 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.40 | 0.000729 |
N | 193 | S193S | agT | agC | 2 | 2 | B.40 | 0.000729 |
N | 193 | S193I | aGt | aTt | 2 | 2 | B.6 | 0.00182 |
N | 193 | S193I | aGt | aTt | 2 | 2 | C.1 | 0.004785 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | C.36.3 | 0.001134 |
N | 193 | S193T | aGt | aCt | 2 | 2 | D.2 | 0.00015 |
N | 193 | S193T | aGt | aCt | 2 | 2 | N.3 | 0.011628 |
N | 193 | S193R | Agt | Cgt | 2 | 2 | P.1 | 0.000032 |
N | 193 | S193S | agT | agC | 2 | 2 | P.1 | 0.000032 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | P.1.17 | 0.000324 |
N | 193 | S193I | aGt | aTt | 2 | 2 | P.1.7 | 0.000639 |
N | 193 | S193I | aGt | aTt | 2 | 2 | P.6 | 0.006289 |
N | 193 | S193T | aGt | aCt | 2 | 2 | Q.1 | 0.000253 |
N | 193 | S193G | Agt | Ggt | 2 | 2 | Q.8 | 0.00033 |
N | 193 | S193I | aGt | aTt | 1 | 1 | A | 0.000387 |
N | 193 | S193S | agT | agC | 1 | 1 | A.2.5 | 0.000499 |
N | 193 | S193I | aGt | aTt | 1 | 1 | A.2.5 | 0.000499 |
N | 193 | S193T | aGt | aCt | 1 | 1 | A.23.1 | 0.000704 |
N | 193 | S193I | aGt | aTt | 1 | 1 | A.30 | 0.142857 |
N | 193 | S193I | aGt | aTt | 1 | 1 | A.5 | 0.001923 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AA.1 | 0.007246 |
N | 193 | S193L | AGt | CTt | 1 | 1 | All | 0 |
N | 193 | S193F | AGt | TTt | 1 | 1 | All | 0 |
N | 193 | S193V | AGt | GTt | 1 | 1 | All | 0 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AV.1 | 0.005051 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.10 | 0.00053 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.101 | 0.00049 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.102 | 0.000027 |
N | 193 | S193C | Agt | Tgt | 1 | 1 | AY.102 | 0.000027 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.103 | 0.000006 |
N | 193 | S193del | AGT | --- | 1 | 1 | AY.103 | 0.000006 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.107 | 0.000466 |
N | 193 | S193del | AGT | --- | 1 | 1 | AY.108 | 0.001103 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.110 | 0.000113 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.110 | 0.000113 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.111 | 0.000183 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.113 | 0.000142 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.114 | 0.000231 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.116 | 0.000287 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.117 | 0.000085 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.118 | 0.000063 |
N | 193 | S193R | Agt | Cgt | 1 | 1 | AY.12 | 0.000316 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.121 | 0.000135 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.13 | 0.000161 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.16.1 | 0.00047 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.16.1 | 0.00047 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.17 | 0.008197 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.19 | 0.00114 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.23 | 0.00007 |
N | 193 | S193L | AGt | CTt | 1 | 1 | AY.23 | 0.00007 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.24 | 0.000431 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.24 | 0.000431 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.25 | 0.000006 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.26 | 0.000028 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.29 | 0.000016 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.29.1 | 0.000221 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.29.1 | 0.000221 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.3.1 | 0.000085 |
N | 193 | S193C | Agt | Tgt | 1 | 1 | AY.30 | 0.000396 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.30 | 0.000396 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.32 | 0.000532 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.37 | 0.000316 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.39 | 0.000025 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.39.1 | 0.00004 |
N | 193 | S193del1 | agT | ag- | 1 | 1 | AY.4 | 0.000002 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.4.2 | 0.000022 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.4.3 | 0.000842 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.4.4 | 0.000409 |
N | 193 | S193R | agT | agG | 1 | 1 | AY.4.5 | 0.000107 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.4.5 | 0.000107 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.4.5 | 0.000107 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.41 | 0.000294 |
N | 193 | S193del | AGT | --- | 1 | 1 | AY.43 | 0.000004 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.44 | 0.000006 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.45 | 0.000122 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.45 | 0.000122 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.45 | 0.000122 |
N | 193 | S193del | AGT | --- | 1 | 1 | AY.46 | 0.000104 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.46.3 | 0.000934 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.47 | 0.000031 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.48 | 0.000465 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.5 | 0.000021 |
N | 193 | S193del | AGT | --- | 1 | 1 | AY.5 | 0.000021 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.5 | 0.000021 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.5.1 | 0.003759 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.54 | 0.000095 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.54 | 0.000095 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.55 | 0.000917 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.55 | 0.000917 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.57 | 0.000656 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.59 | 0.00053 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.6 | 0.000041 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.60 | 0.000938 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.62 | 0.000436 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.62 | 0.000436 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.65 | 0.000533 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.68 | 0.000274 |
N | 193 | S193R | agT | agA | 1 | 1 | AY.69 | 0.000187 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.69 | 0.000187 |
N | 193 | S193C | Agt | Tgt | 1 | 1 | AY.7 | 0.000196 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.7.1 | 0.000113 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.74 | 0.000116 |
N | 193 | S193del | AGT | --- | 1 | 1 | AY.75 | 0.000056 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.78 | 0.001541 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.80 | 0.001129 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.83 | 0.001724 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.85 | 0.000427 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.9 | 0.000068 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.9.1 | 0.000084 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.9.1 | 0.000084 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.9.1 | 0.000084 |
N | 193 | S193S | agT | agC | 1 | 1 | AY.9.2 | 0.000037 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AY.92 | 0.000287 |
N | 193 | S193N | aGt | aAt | 1 | 1 | AY.93 | 0.000273 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.94 | 0.000443 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.98 | 0.000079 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | AY.99.2 | 0.000092 |
N | 193 | S193T | aGt | aCt | 1 | 1 | AY.99.2 | 0.000092 |
N | 193 | S193I | aGt | aTt | 1 | 1 | AZ.1 | 0.000867 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B | 0.000128 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1 | 0.000009 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1.1 | 0.000018 |
N | 193 | S193R | Agt | Cgt | 1 | 1 | B.1.1 | 0.000018 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.1 | 0.000018 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.10 | 0.001115 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.153 | 0.001095 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.1.161 | 0.003534 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.1.176 | 0.000439 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.194 | 0.00495 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.197 | 0.037037 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.1.198 | 0.001468 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.216 | 0.00089 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.1.216 | 0.00089 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.222 | 0.000204 |
N | 193 | S193C | Agt | Tgt | 1 | 1 | B.1.1.236 | 0.006897 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.241 | 0.00207 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.1.25 | 0.000569 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.1.269 | 0.001353 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.1.275 | 0.011236 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.1.298 | 0.000862 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.1.306 | 0.000438 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.307 | 0.002532 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.316 | 0.000925 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1.1.33 | 0.000421 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.33 | 0.000421 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.1.331 | 0.011628 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.348 | 0.000796 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.369 | 0.000446 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.1.37 | 0.000193 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.372 | 0.000689 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.38 | 0.058824 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.409 | 0.002833 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.1.434 | 0.000349 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.1.46 | 0.004367 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.1.519 | 0.00004 |
N | 193 | S193R | agT | agG | 1 | 1 | B.1.1.7 | 0.000001 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.1.93 | 0.025641 |
N | 193 | S193C | Agt | Tgt | 1 | 1 | B.1.110 | 0.004525 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.110.3 | 0.000718 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.119 | 0.010526 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.139 | 0.000733 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.160 | 0.000031 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1.160 | 0.000031 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.160.26 | 0.002421 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.160.9 | 0.007194 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.177 | 0.000013 |
N | 193 | S193R | Agt | Cgt | 1 | 1 | B.1.177 | 0.000013 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.12 | 0.000152 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.23 | 0.003236 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.35 | 0.000691 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.46 | 0.000918 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.51 | 0.004566 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.53 | 0.002392 |
N | 193 | S193del1 | agT | ag- | 1 | 1 | B.1.177.6 | 0.000977 |
N | 193 | S193F | AGt | TTt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.65 | 0.000665 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.177.68 | 0.015152 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.177.7 | 0.000165 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.177.73 | 0.000566 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.75 | 0.001041 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.177.82 | 0.000477 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.194 | 0.04 |
N | 193 | S193R | Agt | Cgt | 1 | 1 | B.1.2 | 0.000009 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 193 | S193C | Agt | Tgt | 1 | 1 | B.1.2 | 0.000009 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.206 | 0.000816 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.210 | 0.002132 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.221 | 0.000071 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.221 | 0.000071 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.222 | 0.001692 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.235 | 0.002519 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.240 | 0.000216 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.240 | 0.000216 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.252 | 0.006623 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.258.12 | 0.007874 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1.258.17 | 0.000104 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.258.24 | 0.010753 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1.258.6 | 0.019608 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.287 | 0.030303 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1.3 | 0.002618 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.306 | 0.005714 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.311 | 0.000275 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.315 | 0.006061 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.346 | 0.001311 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.349 | 0.000715 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.351 | 0.00003 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.351 | 0.00003 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.36 | 0.000146 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.36.17 | 0.000494 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.36.19 | 0.009259 |
N | 193 | S193V | AGt | GTt | 1 | 1 | B.1.36.29 | 0.000517 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.36.31 | 0.001751 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.36.35 | 0.002604 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.36.7 | 0.004 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.36.8 | 0.001 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.367 | 0.000792 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.377 | 0.004566 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.380 | 0.006623 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.396 | 0.000706 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.413 | 0.004255 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.415 | 0.014286 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.427 | 0.00005 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.437 | 0.020833 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.44 | 0.008333 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.451 | 0.008197 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.467 | 0.04 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.470 | 0.001404 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.480 | 0.002488 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.503 | 0.002488 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.517 | 0.000427 |
N | 193 | S193R | agT | agG | 1 | 1 | B.1.525 | 0.000113 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | B.1.525 | 0.000113 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.526 | 0.000024 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.533 | 0.009615 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.538 | 0.008065 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.545 | 0.014493 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.549 | 0.007194 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.555 | 0.022222 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.558 | 0.004566 |
N | 193 | S193N | aGT | aAC | 1 | 1 | B.1.560 | 0.00463 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.564 | 0.000426 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.576 | 0.000907 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.577 | 0.000687 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.588 | 0.00091 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.589 | 0.007576 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.599 | 0.00365 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.600 | 0.005848 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.607 | 0.052632 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.617.1 | 0.000129 |
N | 193 | S193del2 | aGT | a-- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 193 | S193del | AGT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 193 | S193S | agT | agC | 1 | 1 | B.1.621 | 0.000089 |
N | 193 | S193T | aGt | aCt | 1 | 1 | B.1.621.1 | 0.000506 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.623 | 0.000536 |
N | 193 | S193R | Agt | Cgt | 1 | 1 | B.1.637 | 0.000073 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.8 | 0.001972 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.1.9 | 0.006173 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.1.9.5 | 0.005682 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.20 | 0.023256 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.23 | 0.002924 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.29 | 0.003509 |
N | 193 | S193N | aGt | aAt | 1 | 1 | B.33 | 0.021277 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.55 | 0.00295 |
N | 193 | S193I | aGt | aTt | 1 | 1 | B.6.6 | 0.000889 |
N | 193 | S193I | aGt | aTt | 1 | 1 | C.16 | 0.00106 |
N | 193 | S193I | aGt | aTt | 1 | 1 | C.22 | 0.071429 |
N | 193 | S193I | aGT | aTC | 1 | 1 | C.35 | 0.000774 |
N | 193 | S193I | aGt | aTt | 1 | 1 | C.37.1 | 0.002618 |
N | 193 | S193del | AGT | --- | 1 | 1 | C.37.1 | 0.002618 |
N | 193 | S193del1 | AGt | -Tt | 1 | 1 | D.2 | 0.000075 |
N | 193 | S193N | aGt | aAt | 1 | 1 | D.2 | 0.000075 |
N | 193 | S193I | aGt | aTt | 1 | 1 | K.2 | 0.04 |
N | 193 | S193G | Agt | Ggt | 1 | 1 | P.1 | 0.000016 |
N | 193 | S193C | Agt | Tgt | 1 | 1 | P.1 | 0.000016 |
N | 193 | S193I | aGt | aTt | 1 | 1 | P.1.11 | 0.010204 |
N | 193 | S193del1 | agT | ag- | 1 | 1 | P.1.12 | 0.000484 |
N | 193 | S193I | aGt | aTt | 1 | 1 | P.1.12 | 0.000484 |
N | 193 | S193R | Agt | Cgt | 1 | 1 | P.1.14 | 0.000048 |
N | 193 | S193N | aGt | aAt | 1 | 1 | P.1.14 | 0.000048 |
N | 193 | S193del | AGT | --- | 1 | 1 | P.1.15 | 0.000232 |
N | 193 | S193I | aGt | aTt | 1 | 1 | P.1.15 | 0.000232 |
N | 193 | S193I | aGt | aTt | 1 | 1 | P.1.17 | 0.000162 |
N | 193 | S193R | agT | agA | 1 | 1 | P.1.17 | 0.000162 |
N | 193 | S193I | aGt | aTt | 1 | 1 | P.1.4 | 0.000977 |
N | 193 | S193T | aGt | aCt | 1 | 1 | P.1.7 | 0.000319 |
N | 193 | S193I | aGt | aTt | 1 | 1 | Q.1 | 0.000126 |
N | 193 | S193I | aGt | aTt | 1 | 1 | Q.3 | 0.000145 |
N | 193 | S193N | aGt | aAt | 1 | 1 | Q.8 | 0.000165 |
N | 193 | S193del1 | agT | ag- | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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