CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 190

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N190S190InonsynaGtaTt60326032128841-28843
N190S190RnonsynagTagG8668380.96766728841-28843
N190S190RnonsynagTagA866210.024249428841-28843
N190S190RnonsynAgtCgt86670.0080831428841-28843
N190S190NnonsynaGtaAt5855820.99487228841-28843
N190S190NnonsynaGTaAC58530.0051282128841-28843
N190S190GnonsynAgtGgt426426128841-28843
N190S190SsynagTagC2772760.9963928841-28843
N190S190SsynAGtTCt27710.0036101128841-28843
N190S190deldelAGT---8181128841-28843
N190S190CnonsynAgtTgt2727128841-28843
N190S190TnonsynaGtaCt55128841-28843
N190S190DnonsynAGtGAt22128841-28843
N190S190del1delAGt-Tt11128841-28843
N190S190VnonsynAGtGTt11128841-28843

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N190S190IaGtaTt60326032All0.001154
N190S190IaGtaTt19921992B.1.5820.977429
N190S190IaGtaTt10751075B.10.009846
N190S190IaGtaTt897897B.1.5680.996667
N190S190RagTagG838866All0.00016
N190S190RagTagA21866All0.000004
N190S190RAgtCgt7866All0.000001
N190S190IaGtaTt749749B.1.3610.965206
N190S190NaGtaAt582585All0.000111
N190S190NaGTaAC3585All0.000001
N190S190RagTagG468468B.1.2980.989429
N190S190NaGtaAt445445B.1.1.70.000398
N190S190GAgtGgt426426All0.000081
N190S190IaGtaTt320320B.1.6120.848806
N190S190RagTagG302306B.10.002766
N190S190RAgtCgt4306B.10.000037
N190S190IaGtaTt303303B.280.993443
N190S190SagTagC276277All0.000053
N190S190SAGtTCt1277All0
N190S190IaGtaTt139139B.1.5800.565041
N190S190IaGtaTt121121B.1.3200.150685
N190S190SagTagC112112AY.420.004506
N190S190IaGtaTt9393B.1.5810.877358
N190S190delAGT---8181All0.000015
N190S190IaGtaTt7777B.1.20.000678
N190S190GAgtGgt7676B.1.2580.005058
N190S190GAgtGgt5555B.1.3341
N190S190IaGtaTt5454B.1.5960.004705
N190S190GAgtGgt3535B.1.1.3980.112903
N190S190SagTagC3434AY.46.40.005593
N190S190NaGtaAt3434B.1.2430.002366
N190S190GAgtGgt3434B.1.2481
N190S190RagTagG3030AY.260.000849
N190S190CAgtTgt2727All0.000005
N190S190NaGtaAt2727AY.40.000042
N190S190GAgtGgt2626AY.40.00004
N190S190delAGT---2525B.1.1.4340.008714
N190S190GAgtGgt2222B.1.10.000399
N190S190IaGtaTt2121AY.40.000033
N190S190GAgtGgt2121B.10.000192
N190S190GAgtGgt2020B.1.1.70.000018
N190S190CAgtTgt2020B.1.1.70.000018
N190S190SagTagC1717AY.40.000026
N190S190delAGT---1616B.1.1.70.000014
N190S190GAgtGgt1515AY.440.000091
N190S190IaGtaTt1515B.1.1.70.000013
N190S190SagTagC1515B.1.617.20.000056
N190S190SagTagC1414AY.440.000085
N190S190NaGtaAt1414P.1.150.003253
N190S190IaGtaTt1313AY.30.000129
N190S190RagTagA1313B.1.1.1210.031553
N190S190SagTagC1313B.1.1.70.000012
N190S190GAgtGgt1313P.10.000205
N190S190delAGT---1212B.10.00011
N190S190IaGtaTt1212B.1.4200.125
N190S190IaGtaTt1111B0.001406
N190S190GAgtGgt1010AY.140.00088
N190S190IaGtaTt1010B.1.5260.000235
N190S190GAgtGgt99AY.420.000362
N190S190IaGtaTt99B.1.5950.002349
N190S190GAgtGgt88AY.390.000198
N190S190IaGtaTt88B.1.2060.006525
N190S190IaGtaTt88B.1.5640.003407
N190S190IaGtaTt88B.1.5760.007253
N190S190SagTagC77AY.1060.002344
N190S190GAgtGgt77AY.30.00007
N190S190NaGtaAt77B.1.4290.000165
N190S190IaGtaTt77B.1.4510.057377
N190S190SagTagC77P.10.00011
N190S190GAgtGgt66A0.002322
N190S190GAgtGgt66AY.250.000036
N190S190RagTagG66B.1.20.000053
N190S190NaGtaAt66B.1.2580.000399
N190S190TaGtaCt55All0.000001
N190S190GAgtGgt55AY.270.000324
N190S190SagTagC55B.10.000046
N190S190IaGtaTt55B.1.10.000091
N190S190NaGtaAt55B.1.177.60.004883
N190S190RagTagG55B.1.617.20.000019
N190S190GAgtGgt55B.1.617.20.000019
N190S190GAgtGgt44AY.160.001519
N190S190SagTagC44AY.250.000024
N190S190SagTagC44AY.30.00004
N190S190IaGtaTt44AY.46.50.000794
N190S190SagTagC44B.1.20.000035
N190S190RagTagG44B.1.9.50.022727
N190S190SagTagC44Q.10.000505
N190S190IaGtaTt33AY.250.000018
N190S190NaGtaAt33AY.30.00003
N190S190GAgtGgt33AY.430.000013
N190S190SagTagC33AY.460.000312
N190S190GAgtGgt33AY.9.10.000251
N190S190GAgtGgt33B.1.1.1480.026316
N190S190GAgtGgt33B.1.1.280.000934
N190S190IaGtaTt33B.1.1.4320.003797
N190S190RagTagA23B.1.1.70.000002
N190S190RagTagG13B.1.1.70.000001
N190S190GAgtGgt33B.1.20.000026
N190S190NaGtaAt33B.1.2210.000213
N190S190IaGtaTt33B.1.36.220.003623
N190S190IaGtaTt33B.1.3690.000856
N190S190IaGtaTt33B.1.3960.002117
N190S190NaGtaAt33B.1.5090.002597
N190S190IaGtaTt33B.1.5460.011111
N190S190IaGtaTt33B.1.5770.002062
N190S190RagTagG33B.1.5960.000261
N190S190IaGtaTt33B.290.010526
N190S190SagTagC120.055556
N190S190SAGtTCt120.055556
N190S190DAGtGAt22All0
N190S190SagTagC22AY.1020.000053
N190S190RagTagG22AY.1030.000012
N190S190GAgtGgt22AY.1030.000012
N190S190GAgtGgt22AY.16.10.00094
N190S190GAgtGgt22AY.4.50.000215
N190S190NaGtaAt22AY.4.50.000215
N190S190delAGT---22AY.400.001929
N190S190NaGtaAt22AY.430.000009
N190S190NaGtaAt22AY.440.000012
N190S190delAGT---22AY.500.001599
N190S190RagTagG22AY.650.001066
N190S190NaGTaAC12AY.750.000056
N190S190NaGtaAt12AY.750.000056
N190S190NaGtaAt22AY.90.000135
N190S190delAGT---22AY.9.20.000073
N190S190TaGtaCt22B.10.000018
N190S190GAgtGgt22B.1.1.1010.02
N190S190RagTagG22B.1.1.3350.025974
N190S190GAgtGgt22B.1.1.4340.000697
N190S190RagTagA22B.1.160.280.005848
N190S190IaGtaTt22B.1.1700.008621
N190S190delAGT---22B.1.1770.000026
N190S190IaGtaTt22B.1.177.730.001133
N190S190NaGtaAt22B.1.20.000018
N190S190CAgtTgt22B.1.20.000018
N190S190IaGtaTt22B.1.2340.000264
N190S190IaGtaTt22B.1.2430.000139
N190S190IaGtaTt22B.1.3300.057143
N190S190IaGtaTt22B.1.3670.001585
N190S190IaGtaTt22B.1.4270.000101
N190S190GAgtGgt22B.1.428.20.066667
N190S190SagTagC22B.1.4290.000047
N190S190IaGtaTt22B.1.4320.022472
N190S190NaGtaAt22B.1.438.10.000215
N190S190RagTagG22B.1.4590.008163
N190S190NaGtaAt22B.1.5020.105263
N190S190GAgtGgt22B.1.5260.000047
N190S190delAGT---22B.1.5760.001813
N190S190RagTagG22B.1.5950.000522
N190S190NaGtaAt22B.1.6370.000146
N190S190NaGtaAt22P.10.000032
N190S190SagTagC22P.1.130.001797
N190S190TaGtaCt110.055556
N190S190CAgtTgt110.055556
N190S190RagTagG11A.20.000662
N190S190IaGtaTt11A.23.10.000704
N190S190SagTagC11AD.2.10.045455
N190S190VAGtGTt11All0
N190S190del1AGt-Tt11All0
N190S190SagTagC11AY.10.000396
N190S190SagTagC11AY.1000.000046
N190S190GAgtGgt11AY.1000.000046
N190S190GAgtGgt11AY.1020.000027
N190S190IaGtaTt11AY.1030.000006
N190S190SagTagC11AY.1090.00074
N190S190RagTagG11AY.1130.000142
N190S190SagTagC11AY.1170.000085
N190S190NaGtaAt11AY.1190.000035
N190S190RagTagG11AY.1210.000135
N190S190SagTagC11AY.230.00007
N190S190NaGtaAt11AY.290.000016
N190S190SagTagC11AY.290.000016
N190S190NaGtaAt11AY.29.10.000221
N190S190RagTagG11AY.30.00001
N190S190delAGT---11AY.30.00001
N190S190NaGtaAt11AY.3.10.000085
N190S190GAgtGgt11AY.330.000067
N190S190NaGtaAt11AY.330.000067
N190S190CAgtTgt11AY.40.000002
N190S190RagTagG11AY.40.000002
N190S190GAgtGgt11AY.4.20.000022
N190S190GAgtGgt11AY.4.30.000842
N190S190NaGtaAt11AY.4.40.000409
N190S190RagTagG11AY.430.000004
N190S190SagTagC11AY.430.000004
N190S190delAGT---11AY.430.000004
N190S190IaGtaTt11AY.440.000006
N190S190GAgtGgt11AY.450.000122
N190S190delAGT---11AY.460.000104
N190S190GAgtGgt11AY.470.000031
N190S190IaGtaTt11AY.50.000021
N190S190delAGT---11AY.50.000021
N190S190SagTagC11AY.50.000021
N190S190SagTagC11AY.510.000909
N190S190SagTagC11AY.540.000095
N190S190NaGtaAt11AY.610.000105
N190S190SagTagC11AY.620.000436
N190S190SagTagC11AY.740.000116
N190S190delAGT---11AY.750.000056
N190S190IaGtaTt11AY.750.000056
N190S190SagTagC11AY.75.10.00018
N190S190IaGtaTt11AY.840.000437
N190S190IaGtaTt11AY.90.000068
N190S190GAgtGgt11AY.930.000273
N190S190SagTagC11AY.98.10.000048
N190S190GAgtGgt11B0.000128
N190S190SagTagC11B0.000128
N190S190del1AGt-Tt11B.10.000009
N190S190CAgtTgt11B.10.000009
N190S190NaGTaAC11B.10.000009
N190S190NaGtaAt11B.1.10.000018
N190S190RagTagA11B.1.10.000018
N190S190TaGtaCt11B.1.1.10.000327
N190S190IaGtaTt11B.1.1.10.000327
N190S190GAgtGgt11B.1.1.100.001115
N190S190RagTagA11B.1.1.1170.009709
N190S190TaGtaCt11B.1.1.1280.007092
N190S190SagTagC11B.1.1.1760.000439
N190S190IaGtaTt11B.1.1.1920.002309
N190S190RagTagG11B.1.1.2040.00304
N190S190SagTagC11B.1.1.2770.000759
N190S190GAgtGgt11B.1.1.2980.000862
N190S190RagTagA11B.1.1.3010.001179
N190S190GAgtGgt11B.1.1.3480.000796
N190S190NaGtaAt11B.1.1.390.00051
N190S190IaGtaTt11B.1.1.4660.008696
N190S190IaGtaTt11B.1.1.5190.00004
N190S190NaGtaAt11B.1.1.530.013699
N190S190GAgtGgt11B.1.1080.005814
N190S190IaGtaTt11B.1.1390.000733
N190S190GAgtGgt11B.1.1600.000031
N190S190SagTagC11B.1.160.160.000929
N190S190GAgtGgt11B.1.1770.000013
N190S190NaGtaAt11B.1.1770.000013
N190S190SagTagC11B.1.1770.000013
N190S190SagTagC11B.1.177.20.004545
N190S190DAGtGAt11B.1.177.630.002703
N190S190delAGT---11B.1.177.680.015152
N190S190RagTagG11B.1.177.730.000566
N190S190IaGtaTt11B.1.1890.004292
N190S190delAGT---11B.1.20.000009
N190S190IaGtaTt11B.1.2230.002778
N190S190GAgtGgt11B.1.2430.00007
N190S190GAgtGgt11B.1.258.110.000396
N190S190IaGtaTt11B.1.2840.013158
N190S190IaGtaTt11B.1.2890.00266
N190S190IaGtaTt11B.1.3360.002439
N190S190IaGtaTt11B.1.3400.004292
N190S190IaGtaTt11B.1.350.008475
N190S190IaGtaTt11B.1.3500.002933
N190S190IaGtaTt11B.1.3510.00003
N190S190delAGT---11B.1.3510.00003
N190S190SagTagC11B.1.3510.00003
N190S190CAgtTgt11B.1.360.000146
N190S190SagTagC11B.1.36.180.00042
N190S190IaGtaTt11B.1.36.310.001751
N190S190IaGtaTt11B.1.36.360.000602
N190S190IaGtaTt11B.1.3700.008
N190S190IaGtaTt11B.1.3750.00082
N190S190IaGtaTt11B.1.3800.006623
N190S190IaGtaTt11B.1.4040.001302
N190S190IaGtaTt11B.1.4080.00369
N190S190delAGT---11B.1.416.10.001563
N190S190IaGtaTt11B.1.4170.028571
N190S190delAGT---11B.1.4270.00005
N190S190IaGtaTt11B.1.4290.000024
N190S190CAgtTgt11B.1.4290.000024
N190S190IaGtaTt11B.1.4530.003236
N190S190delAGT---11B.1.4650.003802
N190S190IaGtaTt11B.1.466.20.000391
N190S190IaGtaTt11B.1.4850.014925
N190S190RagTagA11B.1.5250.000113
N190S190delAGT---11B.1.5250.000113
N190S190NaGtaAt11B.1.5260.000024
N190S190RAgtCgt11B.1.5260.000024
N190S190NaGTaAC11B.1.5600.00463
N190S190IaGtaTt11B.1.5690.014493
N190S190VAGtGTt11B.1.5820.000491
N190S190IaGtaTt11B.1.5900.004545
N190S190SagTagC11B.1.5950.000261
N190S190delAGT---11B.1.5960.000087
N190S190IaGtaTt11B.1.6060.006024
N190S190SagTagC11B.1.6090.000479
N190S190RAgtCgt11B.1.6100.003546
N190S190delAGT---11B.1.617.10.000129
N190S190DAGtGAt11B.1.617.10.000129
N190S190delAGT---11B.1.617.20.000004
N190S190IaGtaTt11B.1.617.20.000004
N190S190NaGtaAt11B.1.617.20.000004
N190S190GAgtGgt11B.1.6210.000089
N190S190IaGtaTt11B.1.6210.000089
N190S190RAgtCgt11B.1.6230.000536
N190S190IaGtaTt11B.1.6270.00202
N190S190IaGtaTt11B.1.780.008547
N190S190RagTagG11B.1.88.10.004808
N190S190NaGtaAt11B.1.90.006173
N190S190NaGtaAt11B.30.000831
N190S190delAGT---11C.350.000774
N190S190delAGT---11C.37.10.002618
N190S190delAGT---11P.10.000016
N190S190GAgtGgt11P.1.140.000048
N190S190SagTagC11P.1.160.000374
N190S190IaGtaTt11P.20.000187
N190S190NaGtaAt11Q.30.000145
N190S190GAgtGgt11R.10.00009