CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 19

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	19	G19G		syn	ggA	ggG	3380	3367	0.996154	28328-28330
N	19	G19G		syn	ggA	ggC	3380	9	0.00266272	28328-28330
N	19	G19G		syn	ggA	ggT	3380	4	0.00118343	28328-28330
N	19	G19R		nonsyn	Gga	Aga	957	922	0.963427	28328-28330
N	19	G19R		nonsyn	Gga	Cga	957	24	0.0250784	28328-28330
N	19	G19R		nonsyn	GgA	AgG	957	11	0.0114943	28328-28330
N	19	G19E		nonsyn	gGa	gAa	532	509	0.956767	28328-28330
N	19	G19E		nonsyn	gGA	gAG	532	23	0.0432331	28328-28330
N	19	G19V		nonsyn	gGa	gTa	157	157	1	28328-28330
N	19	G19A		nonsyn	gGa	gCa	32	32	1	28328-28330
N	19	G19del		del	GGA	---	19	19	1	28328-28330
N	19	G19X		nonsyn	Gga	Tga	15	15	1	28328-28330
N	19	G19del1		del	Gga	-ga	9	8	0.888889	28328-28330
N	19	G19del1		del	gGA	gA-	9	1	0.111111	28328-28330
N	19	G19W		nonsyn	GgA	TgG	3	3	1	28328-28330
N	19	G19T		nonsyn	GGa	ACa	1	1	1	28328-28330
N	19	G19L		nonsyn	GGa	TTa	1	1	1	28328-28330
N	19	G19S		nonsyn	GgA	AgC	1	1	1	28328-28330

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	19	G19G	ggA	ggG	3367	3380	All	0.000644
N	19	G19G	ggA	ggC	9	3380	All	0.000002
N	19	G19G	ggA	ggT	4	3380	All	0.000001
N	19	G19G	ggA	ggG	2759	2759	B.1.628	0.972163
N	19	G19R	Gga	Aga	922	957	All	0.000176
N	19	G19R	Gga	Cga	24	957	All	0.000005
N	19	G19R	GgA	AgG	11	957	All	0.000002
N	19	G19E	gGa	gAa	509	532	All	0.000097
N	19	G19E	gGA	gAG	23	532	All	0.000004
N	19	G19G	ggA	ggG	290	290	B.1.631	0.976431
N	19	G19V	gGa	gTa	157	157	All	0.00003
N	19	G19R	Gga	Aga	113	113	B.1.2	0.000995
N	19	G19R	Gga	Aga	104	104	AY.47	0.003235
N	19	G19R	Gga	Aga	103	103	B.1	0.000943
N	19	G19G	ggA	ggG	86	86	B.1	0.000788
N	19	G19R	Gga	Aga	72	72	B.1.177	0.000948
N	19	G19E	gGa	gAa	63	63	AY.4	0.000098
N	19	G19R	Gga	Aga	62	62	B.1.526	0.001457
N	19	G19R	Gga	Aga	53	53	B.1.396	0.037403
N	19	G19E	gGa	gAa	52	52	AY.25	0.000313
N	19	G19E	gGa	gAa	41	41	B.1.1.7	0.000037
N	19	G19R	Gga	Aga	38	38	AY.3	0.000378
N	19	G19G	ggA	ggG	33	33	AY.25	0.000198
N	19	G19G	ggA	ggG	33	33	P.1	0.00052
N	19	G19A	gGa	gCa	32	32	All	0.000006
N	19	G19G	ggA	ggG	26	32	AY.3	0.000259
N	19	G19G	ggA	ggC	6	32	AY.3	0.00006
N	19	G19R	Gga	Aga	30	30	AY.85	0.012815
N	19	G19E	gGa	gAa	30	30	B.1.617.2	0.000113
N	19	G19E	gGa	gAa	24	24	AY.116	0.006883
N	19	G19E	gGa	gAa	24	24	AY.3	0.000239
N	19	G19A	gGa	gCa	24	24	B.1.525	0.002716
N	19	G19V	gGa	gTa	23	23	A.1	0.006483
N	19	G19E	gGA	gAG	23	23	B.1.628	0.008104
N	19	G19R	Gga	Aga	22	22	B.1.596	0.001917
N	19	G19V	gGa	gTa	21	21	AY.5	0.000434
N	19	G19G	ggA	ggG	20	21	B.1.1.7	0.000018
N	19	G19G	ggA	ggC	1	21	B.1.1.7	0.000001
N	19	G19E	gGa	gAa	21	21	B.1.2	0.000185
N	19	G19R	Gga	Aga	18	20	B.1.1	0.000327
N	19	G19R	Gga	Cga	2	20	B.1.1	0.000036
N	19	G19del	GGA	---	19	19	All	0.000004
N	19	G19R	Gga	Aga	19	19	AY.4	0.00003
N	19	G19E	gGa	gAa	18	18	AY.54	0.001716
N	19	G19E	gGa	gAa	17	17	AY.43	0.000075
N	19	G19R	Gga	Aga	16	16	B.1.258.17	0.001664
N	19	G19G	ggA	ggG	16	16	B.1.627	0.032323
N	19	G19X	Gga	Tga	15	15	All	0.000003
N	19	G19R	Gga	Aga	15	15	B.1.243	0.001044
N	19	G19G	ggA	ggG	15	15	B.1.617.2	0.000056
N	19	G19R	Gga	Cga	8	14	B.1.1.7	0.000007
N	19	G19R	Gga	Aga	6	14	B.1.1.7	0.000005
N	19	G19E	gGa	gAa	13	13	AY.103	0.000081
N	19	G19E	gGa	gAa	13	13	AY.33	0.000868
N	19	G19E	gGa	gAa	13	13	B.1.1.519	0.000516
N	19	G19V	gGa	gTa	13	13	B.1.1.7	0.000012
N	19	G19R	Gga	Aga	13	13	B.1.617.2	0.000049
N	19	G19R	Gga	Aga	12	12	AY.113	0.001709
N	19	G19V	gGa	gTa	12	12	B.1	0.00011
N	19	G19R	Gga	Aga	12	12	B.1.213	0.179104
N	19	G19R	Gga	Aga	12	12	B.1.36	0.001751
N	19	G19E	gGa	gAa	12	12	P.1	0.000189
N	19	G19G	ggA	ggG	12	12	P.1.12	0.005808
N	19	G19V	gGa	gTa	11	11	AY.4	0.000017
N	19	G19E	gGa	gAa	11	11	AY.44	0.000067
N	19	G19V	gGa	gTa	11	11	B.1.2	0.000097
N	19	G19R	GgA	AgG	11	11	B.1.628	0.003876
N	19	G19R	Gga	Aga	10	10	AY.14	0.00088
N	19	G19E	gGa	gAa	10	10	AY.35	0.00233
N	19	G19G	ggA	ggG	10	10	B.1.2	0.000088
N	19	G19del1	Gga	-ga	8	9	All	0.000002
N	19	G19del1	gGA	gA-	1	9	All	0
N	19	G19R	Gga	Aga	8	8	AY.103	0.00005
N	19	G19E	gGa	gAa	8	8	AY.37	0.002528
N	19	G19E	gGa	gAa	8	8	AY.42	0.000322
N	19	G19R	Gga	Aga	8	8	B.1.110.3	0.005747
N	19	G19V	gGa	gTa	8	8	B.1.617.2	0.00003
N	19	G19R	Gga	Aga	7	7	AY.44	0.000043
N	19	G19E	gGa	gAa	7	7	AY.46.4	0.001152
N	19	G19E	gGa	gAa	7	7	B.1.160	0.000218
N	19	G19R	Gga	Aga	7	7	B.1.160	0.000218
N	19	G19R	Gga	Aga	7	7	B.1.232	0.003761
N	19	G19R	Gga	Aga	7	7	B.1.305	0.015054
N	19	G19R	Gga	Cga	7	7	B.1.525	0.000792
N	19	G19R	Gga	Aga	6	6	AY.25	0.000036
N	19	G19R	Gga	Aga	6	6	AY.26	0.00017
N	19	G19G	ggA	ggG	5	6	AY.44	0.00003
N	19	G19G	ggA	ggC	1	6	AY.44	0.000006
N	19	G19G	ggA	ggG	6	6	B.1.1	0.000109
N	19	G19R	Gga	Aga	6	6	B.1.1.50	0.004073
N	19	G19R	Gga	Aga	6	6	B.1.595	0.001566
N	19	G19R	Gga	Aga	5	5	AY.33	0.000334
N	19	G19E	gGa	gAa	5	5	AY.46	0.00052
N	19	G19E	gGa	gAa	5	5	AY.9	0.000338
N	19	G19E	gGa	gAa	5	5	B.1.1	0.000091
N	19	G19V	gGa	gTa	5	5	B.1.1	0.000091
N	19	G19del	GGA	---	5	5	B.1.1.7	0.000004
N	19	G19R	Gga	Aga	5	5	B.1.470	0.007022
N	19	G19G	ggA	ggG	4	4	AY.103	0.000025
N	19	G19E	gGa	gAa	4	4	AY.23	0.000279
N	19	G19G	ggA	ggG	4	4	AY.43	0.000018
N	19	G19R	Gga	Aga	4	4	B.1.258	0.000266
N	19	G19G	ggA	ggG	4	4	C.37	0.000464
N	19	G19W	GgA	TgG	3	3	All	0.000001
N	19	G19V	gGa	gTa	3	3	AY.102	0.00008
N	19	G19E	gGa	gAa	3	3	AY.102	0.00008
N	19	G19V	gGa	gTa	3	3	AY.103	0.000019
N	19	G19R	Gga	Aga	3	3	AY.106	0.001005
N	19	G19E	gGa	gAa	3	3	AY.119	0.000106
N	19	G19E	gGa	gAa	3	3	AY.2	0.001068
N	19	G19E	gGa	gAa	3	3	AY.20	0.000117
N	19	G19E	gGa	gAa	3	3	AY.29	0.000047
N	19	G19G	ggA	ggG	3	3	AY.39.1	0.000119
N	19	G19R	Gga	Aga	3	3	AY.42	0.000121
N	19	G19R	Gga	Aga	3	3	B	0.000383
N	19	G19X	Gga	Tga	3	3	B.1	0.000027
N	19	G19E	gGa	gAa	3	3	B.1	0.000027
N	19	G19E	gGa	gAa	3	3	B.1.1.1	0.00098
N	19	G19V	gGa	gTa	3	3	B.1.1.308	0.035294
N	19	G19E	gGa	gAa	3	3	B.1.177.69	0.004451
N	19	G19R	Gga	Aga	3	3	B.1.320	0.003736
N	19	G19R	Gga	Aga	3	3	B.1.427	0.000151
N	19	G19R	Gga	Aga	3	3	B.1.575	0.00091
N	19	G19R	Gga	Aga	3	3	B.1.580	0.012195
N	19	G19G	ggA	ggG	2	3	B.1.596	0.000174
N	19	G19G	ggA	ggC	1	3	B.1.596	0.000087
N	19	G19R	Gga	Aga	3	3	B.1.621	0.000266
N	19	G19W	GgA	TgG	3	3	B.1.628	0.001057
N	19	G19R	Gga	Aga	3	3	B.1.78	0.025641
N	19	G19R	Gga	Aga	3	3	P.1	0.000047
N	19	G19R	Gga	Aga	2	2	A.2.2	0.003378
N	19	G19R	Gga	Aga	2	2	AY.101	0.000981
N	19	G19E	gGa	gAa	2	2	AY.113	0.000285
N	19	G19G	ggA	ggG	2	2	AY.117	0.000169
N	19	G19E	gGa	gAa	2	2	AY.118	0.000125
N	19	G19E	gGa	gAa	2	2	AY.19	0.002281
N	19	G19G	ggA	ggG	2	2	AY.26	0.000057
N	19	G19R	Gga	Aga	2	2	AY.29	0.000032
N	19	G19V	gGa	gTa	2	2	AY.3	0.00002
N	19	G19E	gGa	gAa	2	2	AY.36	0.000296
N	19	G19del1	Gga	-ga	2	2	AY.39	0.000049
N	19	G19E	gGa	gAa	2	2	AY.39	0.000049
N	19	G19A	gGa	gCa	2	2	AY.4	0.000003
N	19	G19R	Gga	Aga	2	2	AY.4.2	0.000043
N	19	G19E	gGa	gAa	2	2	AY.4.5	0.000215
N	19	G19del	GGA	---	2	2	AY.43	0.000009
N	19	G19V	gGa	gTa	2	2	AY.43	0.000009
N	19	G19R	Gga	Aga	2	2	AY.43	0.000009
N	19	G19E	gGa	gAa	2	2	AY.47	0.000062
N	19	G19del	GGA	---	2	2	AY.5	0.000041
N	19	G19R	Gga	Aga	2	2	AY.61	0.00021
N	19	G19E	gGa	gAa	2	2	AY.62	0.000871
N	19	G19V	gGa	gTa	2	2	AY.86	0.00166
N	19	G19R	Gga	Aga	2	2	AY.98.1	0.000097
N	19	G19G	ggA	ggG	2	2	B	0.000256
N	19	G19A	gGa	gCa	2	2	B.1	0.000018
N	19	G19R	Gga	Aga	2	2	B.1.1.306	0.000877
N	19	G19E	gGa	gAa	2	2	B.1.110.3	0.001437
N	19	G19X	Gga	Tga	2	2	B.1.160	0.000062
N	19	G19E	gGa	gAa	2	2	B.1.177	0.000026
N	19	G19V	gGa	gTa	2	2	B.1.177	0.000026
N	19	G19E	gGa	gAa	2	2	B.1.221	0.000142
N	19	G19E	gGa	gAa	2	2	B.1.258.17	0.000208
N	19	G19R	Gga	Aga	1	2	B.1.311	0.000275
N	19	G19R	Gga	Cga	1	2	B.1.311	0.000275
N	19	G19R	Gga	Aga	2	2	B.1.330	0.057143
N	19	G19E	gGa	gAa	2	2	B.1.349	0.00143
N	19	G19R	Gga	Aga	2	2	B.1.369	0.00057
N	19	G19E	gGa	gAa	2	2	B.1.416.1	0.003125
N	19	G19E	gGa	gAa	2	2	B.1.427	0.000101
N	19	G19R	Gga	Aga	2	2	B.1.429	0.000047
N	19	G19E	gGa	gAa	2	2	B.1.429	0.000047
N	19	G19V	gGa	gTa	2	2	B.1.429	0.000047
N	19	G19G	ggA	ggG	2	2	B.1.429	0.000047
N	19	G19R	Gga	Aga	2	2	B.1.466.2	0.000782
N	19	G19G	ggA	ggG	2	2	B.1.474	0.003802
N	19	G19R	Gga	Aga	2	2	B.1.564	0.000852
N	19	G19V	gGa	gTa	2	2	B.1.575	0.000607
N	19	G19R	Gga	Aga	2	2	B.1.576	0.001813
N	19	G19R	Gga	Aga	2	2	B.1.579	0.022472
N	19	G19R	Gga	Aga	1	2	P.2	0.000187
N	19	G19R	Gga	Cga	1	2	P.2	0.000187
N	19	G19X	Gga	Tga	1	1	A	0.000387
N	19	G19R	Gga	Aga	1	1	A.21	0.00277
N	19	G19A	gGa	gCa	1	1	AE.8	0.000489
N	19	G19L	GGa	TTa	1	1	All	0
N	19	G19T	GGa	ACa	1	1	All	0
N	19	G19S	GgA	AgC	1	1	All	0
N	19	G19V	gGa	gTa	1	1	AY.100	0.000046
N	19	G19G	ggA	ggG	1	1	AY.100	0.000046
N	19	G19E	gGa	gAa	1	1	AY.100	0.000046
N	19	G19R	Gga	Aga	1	1	AY.102	0.000027
N	19	G19T	GGa	ACa	1	1	AY.103	0.000006
N	19	G19L	GGa	TTa	1	1	AY.103	0.000006
N	19	G19G	ggA	ggG	1	1	AY.110	0.000113
N	19	G19R	Gga	Aga	1	1	AY.110	0.000113
N	19	G19G	ggA	ggG	1	1	AY.113	0.000142
N	19	G19G	ggA	ggG	1	1	AY.114	0.000231
N	19	G19G	ggA	ggG	1	1	AY.116	0.000287
N	19	G19G	ggA	ggG	1	1	AY.118	0.000063
N	19	G19V	gGa	gTa	1	1	AY.118	0.000063
N	19	G19R	Gga	Aga	1	1	AY.119	0.000035
N	19	G19G	ggA	ggG	1	1	AY.119	0.000035
N	19	G19G	ggA	ggG	1	1	AY.120	0.000037
N	19	G19E	gGa	gAa	1	1	AY.120	0.000037
N	19	G19del	GGA	---	1	1	AY.120	0.000037
N	19	G19E	gGa	gAa	1	1	AY.120.2	0.001285
N	19	G19E	gGa	gAa	1	1	AY.121	0.000135
N	19	G19R	Gga	Aga	1	1	AY.13	0.000161
N	19	G19E	gGa	gAa	1	1	AY.13	0.000161
N	19	G19G	ggA	ggG	1	1	AY.14	0.000088
N	19	G19R	Gga	Aga	1	1	AY.16	0.00038
N	19	G19X	Gga	Tga	1	1	AY.18	0.010101
N	19	G19V	gGa	gTa	1	1	AY.25	0.000006
N	19	G19E	gGa	gAa	1	1	AY.26	0.000028
N	19	G19G	ggA	ggG	1	1	AY.27	0.000065
N	19	G19R	Gga	Aga	1	1	AY.28	0.00189
N	19	G19V	gGa	gTa	1	1	AY.29	0.000016
N	19	G19del1	gGA	gA-	1	1	AY.3	0.00001
N	19	G19G	ggA	ggG	1	1	AY.3.1	0.000085
N	19	G19V	gGa	gTa	1	1	AY.32	0.000532
N	19	G19E	gGa	gAa	1	1	AY.34	0.000097
N	19	G19R	Gga	Aga	1	1	AY.38	0.000499
N	19	G19X	Gga	Tga	1	1	AY.39	0.000025
N	19	G19R	Gga	Aga	1	1	AY.39	0.000025
N	19	G19V	gGa	gTa	1	1	AY.39.1	0.00004
N	19	G19E	gGa	gAa	1	1	AY.39.1.1	0.000725
N	19	G19G	ggA	ggG	1	1	AY.39.2	0.001541
N	19	G19X	Gga	Tga	1	1	AY.4	0.000002
N	19	G19G	ggA	ggT	1	1	AY.4	0.000002
N	19	G19G	ggA	ggG	1	1	AY.4.2	0.000022
N	19	G19V	gGa	gTa	1	1	AY.4.2.1	0.000149
N	19	G19del	GGA	---	1	1	AY.4.4	0.000409
N	19	G19del1	Gga	-ga	1	1	AY.43	0.000004
N	19	G19X	Gga	Tga	1	1	AY.44	0.000006
N	19	G19del	GGA	---	1	1	AY.44	0.000006
N	19	G19del	GGA	---	1	1	AY.46	0.000104
N	19	G19del	GGA	---	1	1	AY.46.6	0.000072
N	19	G19V	gGa	gTa	1	1	AY.48	0.000465
N	19	G19R	Gga	Cga	1	1	AY.5	0.000021
N	19	G19E	gGa	gAa	1	1	AY.5	0.000021
N	19	G19V	gGa	gTa	1	1	AY.5.3	0.000337
N	19	G19del	GGA	---	1	1	AY.5.3	0.000337
N	19	G19R	Gga	Aga	1	1	AY.52	0.000814
N	19	G19R	Gga	Aga	1	1	AY.55	0.000917
N	19	G19E	gGa	gAa	1	1	AY.6	0.000041
N	19	G19V	gGa	gTa	1	1	AY.6	0.000041
N	19	G19G	ggA	ggG	1	1	AY.6	0.000041
N	19	G19G	ggA	ggG	1	1	AY.61	0.000105
N	19	G19V	gGa	gTa	1	1	AY.61	0.000105
N	19	G19E	gGa	gAa	1	1	AY.61	0.000105
N	19	G19E	gGa	gAa	1	1	AY.64	0.000595
N	19	G19V	gGa	gTa	1	1	AY.7.1	0.000113
N	19	G19R	Gga	Cga	1	1	AY.7.2	0.000559
N	19	G19G	ggA	ggG	1	1	AY.73	0.000665
N	19	G19E	gGa	gAa	1	1	AY.74	0.000116
N	19	G19E	gGa	gAa	1	1	AY.75	0.000056
N	19	G19V	gGa	gTa	1	1	AY.75	0.000056
N	19	G19G	ggA	ggT	1	1	AY.75.1	0.00018
N	19	G19R	Gga	Aga	1	1	AY.9	0.000068
N	19	G19R	Gga	Aga	1	1	AY.9.1	0.000084
N	19	G19G	ggA	ggG	1	1	AY.9.2	0.000037
N	19	G19E	gGa	gAa	1	1	AY.9.2	0.000037
N	19	G19E	gGa	gAa	1	1	AY.90	0.000684
N	19	G19R	Gga	Aga	1	1	AY.92	0.000287
N	19	G19G	ggA	ggG	1	1	AY.96	0.002075
N	19	G19V	gGa	gTa	1	1	AY.98	0.000079
N	19	G19E	gGa	gAa	1	1	AY.98.1	0.000048
N	19	G19V	gGa	gTa	1	1	AY.98.1	0.000048
N	19	G19E	gGa	gAa	1	1	AY.99	0.001049
N	19	G19V	gGa	gTa	1	1	AY.99.2	0.000092
N	19	G19E	gGa	gAa	1	1	B	0.000128
N	19	G19del1	Gga	-ga	1	1	B.1	0.000009
N	19	G19del1	Gga	-ga	1	1	B.1.1	0.000018
N	19	G19del	GGA	---	1	1	B.1.1	0.000018
N	19	G19R	Gga	Aga	1	1	B.1.1.141	0.002012
N	19	G19R	Gga	Aga	1	1	B.1.1.214	0.000055
N	19	G19del	GGA	---	1	1	B.1.1.216	0.00089
N	19	G19V	gGa	gTa	1	1	B.1.1.269	0.001353
N	19	G19R	Gga	Aga	1	1	B.1.1.28	0.000311
N	19	G19E	gGa	gAa	1	1	B.1.1.291	0.000742
N	19	G19del	GGA	---	1	1	B.1.1.300	0.010753
N	19	G19V	gGa	gTa	1	1	B.1.1.303	0.002762
N	19	G19E	gGa	gAa	1	1	B.1.1.306	0.000438
N	19	G19R	Gga	Aga	1	1	B.1.1.317	0.000412
N	19	G19V	gGa	gTa	1	1	B.1.1.318	0.000302
N	19	G19E	gGa	gAa	1	1	B.1.1.326	0.001761
N	19	G19R	Gga	Aga	1	1	B.1.1.329	0.003846
N	19	G19E	gGa	gAa	1	1	B.1.1.348	0.000796
N	19	G19R	Gga	Aga	1	1	B.1.1.354	0.004386
N	19	G19R	Gga	Aga	1	1	B.1.1.363	0.005988
N	19	G19R	Gga	Aga	1	1	B.1.1.413	0.006897
N	19	G19V	gGa	gTa	1	1	B.1.1.456	0.055556
N	19	G19R	Gga	Aga	1	1	B.1.1.500	0.02
N	19	G19V	gGa	gTa	1	1	B.1.1.519	0.00004
N	19	G19R	Gga	Aga	1	1	B.1.1.519	0.00004
N	19	G19R	Gga	Aga	1	1	B.1.1.526	0.003546
N	19	G19R	Gga	Aga	1	1	B.1.1.63	0.000386
N	19	G19A	gGa	gCa	1	1	B.1.1.7	0.000001
N	19	G19X	Gga	Tga	1	1	B.1.1.7	0.000001
N	19	G19E	gGa	gAa	1	1	B.1.149	0.003425
N	19	G19A	gGa	gCa	1	1	B.1.177	0.000013
N	19	G19G	ggA	ggG	1	1	B.1.177	0.000013
N	19	G19R	Gga	Aga	1	1	B.1.177.57	0.000281
N	19	G19S	GgA	AgC	1	1	B.1.177.63	0.002703
N	19	G19R	Gga	Aga	1	1	B.1.177.73	0.000566
N	19	G19R	Gga	Aga	1	1	B.1.177.75	0.001041
N	19	G19A	gGa	gCa	1	1	B.1.177.77	0.000726
N	19	G19R	Gga	Aga	1	1	B.1.177.81	0.000189
N	19	G19E	gGa	gAa	1	1	B.1.177.83	0.001481
N	19	G19E	gGa	gAa	1	1	B.1.177.86	0.000183
N	19	G19E	gGa	gAa	1	1	B.1.177.9	0.001332
N	19	G19E	gGa	gAa	1	1	B.1.187	0.033333
N	19	G19X	Gga	Tga	1	1	B.1.2	0.000009
N	19	G19del1	Gga	-ga	1	1	B.1.2	0.000009
N	19	G19R	Gga	Cga	1	1	B.1.214.2	0.0006
N	19	G19R	Gga	Aga	1	1	B.1.221.1	0.002907
N	19	G19E	gGa	gAa	1	1	B.1.232	0.000537
N	19	G19G	ggA	ggG	1	1	B.1.232	0.000537
N	19	G19G	ggA	ggT	1	1	B.1.234	0.000132
N	19	G19R	Gga	Aga	1	1	B.1.234	0.000132
N	19	G19X	Gga	Tga	1	1	B.1.240	0.000216
N	19	G19R	Gga	Aga	1	1	B.1.243.1	0.022222
N	19	G19G	ggA	ggG	1	1	B.1.247	0.014925
N	19	G19R	Gga	Aga	1	1	B.1.306	0.005714
N	19	G19V	gGa	gTa	1	1	B.1.313	0.006579
N	19	G19V	gGa	gTa	1	1	B.1.351.3	0.000876
N	19	G19R	Gga	Aga	1	1	B.1.36.10	0.004785
N	19	G19G	ggA	ggG	1	1	B.1.36.10	0.004785
N	19	G19E	gGa	gAa	1	1	B.1.36.18	0.00042
N	19	G19E	gGa	gAa	1	1	B.1.36.29	0.000517
N	19	G19R	Gga	Aga	1	1	B.1.36.31	0.001751
N	19	G19R	Gga	Aga	1	1	B.1.36.33	0.007576
N	19	G19E	gGa	gAa	1	1	B.1.36.36	0.000602
N	19	G19G	ggA	ggG	1	1	B.1.369	0.000285
N	19	G19R	Gga	Aga	1	1	B.1.375	0.00082
N	19	G19E	gGa	gAa	1	1	B.1.389	0.001002
N	19	G19V	gGa	gTa	1	1	B.1.423	0.010204
N	19	G19R	Gga	Aga	1	1	B.1.438.1	0.000107
N	19	G19E	gGa	gAa	1	1	B.1.459	0.004082
N	19	G19R	Gga	Aga	1	1	B.1.546	0.003704
N	19	G19E	gGa	gAa	1	1	B.1.561	0.000397
N	19	G19G	ggA	ggT	1	1	B.1.595.1	0.005848
N	19	G19V	gGa	gTa	1	1	B.1.595.4	0.007299
N	19	G19R	Gga	Aga	1	1	B.1.606	0.006024
N	19	G19R	Gga	Aga	1	1	B.1.612	0.002653
N	19	G19E	gGa	gAa	1	1	B.1.617.1	0.000129
N	19	G19X	Gga	Tga	1	1	B.1.617.2	0.000004
N	19	G19del1	Gga	-ga	1	1	B.1.617.2	0.000004
N	19	G19G	ggA	ggG	1	1	B.1.618	0.004032
N	19	G19del1	Gga	-ga	1	1	B.1.621	0.000089
N	19	G19G	ggA	ggG	1	1	B.1.621	0.000089
N	19	G19del	GGA	---	1	1	B.1.628	0.000352
N	19	G19R	Gga	Aga	1	1	B.1.632	0.006711
N	19	G19R	Gga	Aga	1	1	B.1.634	0.003425
N	19	G19V	gGa	gTa	1	1	B.23	0.002924
N	19	G19R	Gga	Aga	1	1	B.28	0.003279
N	19	G19G	ggA	ggG	1	1	B.3	0.000831
N	19	G19R	Gga	Cga	1	1	B.40	0.000364
N	19	G19V	gGa	gTa	1	1	B.55	0.00295
N	19	G19G	ggA	ggG	1	1	B.55	0.00295
N	19	G19V	gGa	gTa	1	1	B.61	0.005747
N	19	G19R	Gga	Aga	1	1	C.1	0.002392
N	19	G19V	gGa	gTa	1	1	C.14	0.004329
N	19	G19V	gGa	gTa	1	1	C.35	0.000774
N	19	G19E	gGa	gAa	1	1	C.37	0.000116
N	19	G19X	Gga	Tga	1	1	D.2	0.000075
N	19	G19G	ggA	ggG	1	1	D.2	0.000075
N	19	G19R	Gga	Cga	1	1	D.2	0.000075
N	19	G19E	gGa	gAa	1	1	N.4	0.004255
N	19	G19V	gGa	gTa	1	1	P.1	0.000016
N	19	G19E	gGa	gAa	1	1	P.1.10	0.000269
N	19	G19R	Gga	Aga	1	1	P.1.14	0.000048
N	19	G19E	gGa	gAa	1	1	P.1.14	0.000048
N	19	G19V	gGa	gTa	1	1	P.1.15	0.000232
N	19	G19E	gGa	gAa	1	1	P.1.7	0.000319
N	19	G19G	ggA	ggG	1	1	Q.1	0.000126
N	19	G19E	gGa	gAa	1	1	R.1	0.00009
N	19	G19R	Gga	Aga	1	1	W.2	0.004831

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.