CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 187 & Codon = Gca

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N187S187AnonsynTcaGca71700.98591528832-28834

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N187S187ATcaGca7071All0.000013
N187S187ATcaGca2323B.1.1.2220.004692
N187S187ATcaGca1111AY.440.000067
N187S187ATcaGca1111B.1.1.70.00001
N187S187ATcaGca44B.1.2340.000528
N187S187ATcaGca33B.1.20.000026
N187S187ATcaGca22AY.40.000003
N187S187ATcaGca22B.10.000018
N187S187ATcaGca12B.1.1770.000013
N187S187ATcaGca22C.160.002121
N187S187ATcaGca11AY.1110.000183
N187S187ATcaGca11AY.260.000028
N187S187ATcaGca11AY.4.20.000022
N187S187ATcaGca11AY.450.000122
N187S187ATcaGca11B.1.1.4340.000349
N187S187ATcaGca11B.1.1.5190.00004
N187S187ATcaGca11B.1.177.180.00116
N187S187ATcaGca11B.1.5090.000866
N187S187ATcaGca11B.1.5960.000087
N187S187ATcaGca11B.1.617.20.000004
N187S187ATcaGca11P.1.150.000232

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.