CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 187

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N187S187LnonsyntCatTa15221152150.99960628832-28834
N187S187LnonsyntCAtTG1522160.00039419228832-28834
N187S187SsyntcAtcG4593470.75599128832-28834
N187S187SsyntcAtcT459880.19172128832-28834
N187S187SsyntcAtcC459240.052287628832-28834
N187S187PnonsynTcaCca1711700.99415228832-28834
N187S187PnonsynTcACcC17110.0058479528832-28834
N187S187AnonsynTcaGca71700.98591528832-28834
N187S187AnonsynTcAGcC7110.014084528832-28834
N187S187deldelTCA---5151128832-28834
N187S187TnonsynTcaAca3434128832-28834
N187S187XnonsyntCatAa540.828832-28834
N187S187XnonsyntCatGa510.228832-28834
N187S187NnonsynTCAAAC22128832-28834
N187S187KnonsynTCaAAa22128832-28834
N187S187RnonsynTCaAGa11128832-28834
N187S187FnonsyntCAtTT11128832-28834
N187S187del1delTcACc-11128832-28834

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N187S187LtCatTa1521515221All0.00291
N187S187LtCAtTG615221All0.000001
N187S187LtCatTa1109911105R.10.99901
N187S187LtCAtTG611105R.10.00054
N187S187LtCatTa786786B.1.2650.998729
N187S187LtCatTa749749B.1.4160.950508
N187S187LtCatTa622622B.1.416.10.971875
N187S187StcAtcG347459All0.000066
N187S187StcAtcT88459All0.000017
N187S187StcAtcC24459All0.000005
N187S187LtCatTa389389B.10.003563
N187S187LtCatTa300300B.1.10.005442
N187S187LtCatTa254254AY.510.230909
N187S187LtCatTa221221B.1.5410.977876
N187S187PTcaCca170171All0.000033
N187S187PTcACcC1171All0
N187S187LtCatTa102102B.1.1.2200.189591
N187S187LtCatTa7777B.1.6221
N187S187ATcaGca7071All0.000013
N187S187ATcAGcC171All0
N187S187LtCatTa6666B.1.6290.88
N187S187delTCA---5151All0.00001
N187S187StcAtcG3450AY.40.000053
N187S187StcAtcT1550AY.40.000023
N187S187StcAtcC150AY.40.000002
N187S187LtCatTa4343B.1.2580.002862
N187S187StcAtcG3639B.1.617.20.000136
N187S187StcAtcT339B.1.617.20.000011
N187S187PTcaCca3838B.1.5260.000893
N187S187StcAtcG3636AY.720.04898
N187S187PTcaCca3636B.1.1.70.000032
N187S187TTcaAca3434All0.000007
N187S187LtCatTa3434B.1.1.5250.185792
N187S187StcAtcG2834B.1.1.70.000025
N187S187StcAtcC434B.1.1.70.000004
N187S187StcAtcT234B.1.1.70.000002
N187S187LtCatTa3333B.1.1.70.00003
N187S187StcAtcG2626AY.250.000156
N187S187ATcaGca2323B.1.1.2220.004692
N187S187LtCatTa2121AY.260.000595
N187S187StcAtcG1721AY.98.10.000823
N187S187StcAtcT421AY.98.10.000194
N187S187StcAtcG1520AY.30.000149
N187S187StcAtcT520AY.30.00005
N187S187PTcaCca2020AY.40.000031
N187S187LtCatTa1919AY.30.000189
N187S187LtCatTa1919B.1.617.20.000072
N187S187PTcaCca1717AY.250.000102
N187S187StcAtcG1417AY.430.000062
N187S187StcAtcT317AY.430.000013
N187S187LtCatTa1717B.1.1.3170.006999
N187S187StcAtcG1616AY.1030.000099
N187S187LtCatTa1616AY.430.000071
N187S187StcAtcT1515AY.1070.00699
N187S187LtCatTa1515AY.4.10.011062
N187S187StcAtcT914B.10.000082
N187S187StcAtcG314B.10.000027
N187S187StcAtcC214B.10.000018
N187S187TTcaAca1313B.1.1.70.000012
N187S187LtCatTa1212AY.40.000019
N187S187delTCA---1212B.10.00011
N187S187LtCatTa1212B.1.1.100.013378
N187S187StcAtcG1212B.1.20.000106
N187S187ATcaGca1111AY.440.000067
N187S187ATcaGca1111B.1.1.70.00001
N187S187LtCatTa1111B.1.5950.002871
N187S187LtCatTa1010AY.470.000311
N187S187StcAtcG810AY.470.000249
N187S187StcAtcC210AY.470.000062
N187S187StcAtcG1010B.1.1.1530.010953
N187S187LtCatTa1010B.1.20.000088
N187S187LtCatTa99B.1.1.2940.011392
N187S187LtCatTa99B.1.6210.000797
N187S187StcAtcG89P.10.000126
N187S187StcAtcT19P.10.000016
N187S187StcAtcG78AY.290.00011
N187S187StcAtcC18AY.290.000016
N187S187LtCatTa88AY.370.002528
N187S187LtCatTa88AY.9.10.00067
N187S187LtCatTa88AY.9.20.000294
N187S187delTCA---88B.1.1.70.000007
N187S187LtCatTa88B.1.160.180.058394
N187S187LtCatTa88B.1.1770.000105
N187S187StcAtcG88B.1.3510.000238
N187S187StcAtcG77AY.440.000043
N187S187StcAtcT77B.1.1.3700.088608
N187S187LtCatTa77B.290.024561
N187S187StcAtcG66AY.1000.000276
N187S187LtCatTa66AY.250.000036
N187S187StcAtcG66AY.390.000148
N187S187LtCatTa66AY.440.000037
N187S187LtCatTa66AY.99.20.000553
N187S187StcAtcG66B.1.10.000109
N187S187StcAtcT56B.1.2580.000333
N187S187StcAtcG16B.1.2580.000067
N187S187LtCatTa66P.10.000095
N187S187LtCatTa55A.10.001409
N187S187XtCatAa45All0.000001
N187S187XtCatGa15All0
N187S187PTcaCca55AY.440.00003
N187S187StcAtcG55B.1.1.2220.00102
N187S187LtCatTa55B.1.1.4020.055556
N187S187TTcaAca55B.1.1.5190.000199
N187S187LtCatTa55B.1.160.320.021459
N187S187LtCatTa44AY.280.007561
N187S187LtCatTa44AY.340.000388
N187S187PTcaCca44AY.390.000099
N187S187PTcaCca44AY.510.003636
N187S187PTcaCca44B.10.000037
N187S187LtCatTa44B.1.1.2220.000816
N187S187LtCatTa44B.1.1.4230.25
N187S187LtCatTa44B.1.1600.000125
N187S187ATcaGca44B.1.2340.000528
N187S187LtCatTa44B.400.001457
N187S187LtCatTa44C.370.000464
N187S187LtCatTa33AY.1020.00008
N187S187LtCatTa33AY.1030.000019
N187S187StcAtcC33AY.360.000445
N187S187LtCatTa33AY.380.001498
N187S187LtCatTa33AY.4.20.000065
N187S187PTcaCca33AY.430.000013
N187S187StcAtcG33AY.90.000203
N187S187StcAtcT33AY.9.20.00011
N187S187StcAtcG33AY.910.002191
N187S187StcAtcC33AY.99.20.000276
N187S187TTcaAca33B.10.000027
N187S187StcAtcT33B.1.1.250.001706
N187S187LtCatTa33B.1.1.3550.046154
N187S187LtCatTa33B.1.1.390.001529
N187S187LtCatTa33B.1.1.5210.016043
N187S187StcAtcC23B.1.1770.000026
N187S187StcAtcG13B.1.1770.000013
N187S187LtCatTa33B.1.177.240.003886
N187S187ATcaGca33B.1.20.000026
N187S187PTcaCca33B.1.2430.000209
N187S187LtCatTa33B.1.2910.057692
N187S187PTcaCca33B.1.3110.000824
N187S187LtCatTa33B.1.36.290.001552
N187S187LtCatTa33B.1.3670.002377
N187S187StcAtcT33B.1.3690.000856
N187S187PTcaCca33B.1.4270.000151
N187S187LtCatTa33B.1.5440.018072
N187S187NTCAAAC22All0
N187S187KTCaAAa22All0
N187S187StcAtcG22AY.1130.000285
N187S187PTcaCca22AY.1210.000271
N187S187StcAtcT12AY.230.00007
N187S187StcAtcG12AY.230.00007
N187S187LtCatTa22AY.240.000862
N187S187PTcaCca22AY.30.00002
N187S187StcAtcG22AY.3.10.000171
N187S187StcAtcG22AY.330.000134
N187S187LtCatTa22AY.390.000049
N187S187LtCatTa22AY.39.10.000079
N187S187TTcaAca22AY.40.000003
N187S187ATcaGca22AY.40.000003
N187S187delTCA---22AY.400.001929
N187S187LtCatTa22AY.420.00008
N187S187delTCA---22AY.430.000009
N187S187StcAtcT22AY.5.30.000675
N187S187delTCA---22AY.500.001599
N187S187LtCatTa22AY.610.00021
N187S187delTCA---22AY.750.000112
N187S187LtCatTa22AY.750.000112
N187S187delTCA---22AY.9.20.000073
N187S187LtCatTa22AY.980.000158
N187S187StcAtcG22AY.980.000158
N187S187ATcaGca22B.10.000018
N187S187KTCaAAa22B.10.000018
N187S187LtCatTa22B.1.1.1890.003026
N187S187LtCatTa22B.1.1.2910.001485
N187S187LtCatTa22B.1.1.3050.007722
N187S187LtCatTa22B.1.1.4110.029412
N187S187LtCatTa22B.1.1.510.003436
N187S187LtCatTa22B.1.1.830.00542
N187S187LtCatTa22B.1.1570.00597
N187S187StcAtcC12B.1.1600.000031
N187S187StcAtcG12B.1.1600.000031
N187S187delTCA---22B.1.1770.000026
N187S187ATcAGcC12B.1.1770.000013
N187S187PTcACcC12B.1.1770.000013
N187S187PTcaCca12B.1.1770.000013
N187S187ATcaGca12B.1.1770.000013
N187S187LtCatTa22B.1.177.100.001756
N187S187LtCatTa22B.1.258.170.000208
N187S187LtCatTa22B.1.3510.000059
N187S187LtCatTa22B.1.4290.000047
N187S187LtCatTa22B.1.4700.002809
N187S187TTcaAca22B.1.5260.000047
N187S187LtCatTa22B.1.5640.000852
N187S187LtCatTa22B.1.5960.000174
N187S187StcAtcG22B.1.5990.007299
N187S187PTcaCca22B.1.617.20.000008
N187S187LtCatTa22B.1.617.30.00597
N187S187LtCatTa22B.1.6370.000146
N187S187LtCatTa22B.1.6380.105263
N187S187LtCatTa22B.30.001661
N187S187LtCatTa22B.550.0059
N187S187ATcaGca22C.160.002121
N187S187TTcaAca22P.10.000032
N187S187StcAtcT110.055556
N187S187LtCatTa11A0.000387
N187S187LtCatTa11A.20.000662
N187S187StcAtcC11A.2.50.000499
N187S187LtCatTa11A.60.005128
N187S187del1TcACc-11All0
N187S187RTCaAGa11All0
N187S187FtCAtTT11All0
N187S187PTcaCca11AY.1000.000046
N187S187LtCatTa11AY.1000.000046
N187S187StcAtcG11AY.1020.000027
N187S187TTcaAca11AY.1030.000006
N187S187StcAtcT11AY.1050.000643
N187S187ATcaGca11AY.1110.000183
N187S187LtCatTa11AY.1130.000142
N187S187PTcaCca11AY.1130.000142
N187S187StcAtcG11AY.1170.000085
N187S187PTcaCca11AY.1180.000063
N187S187StcAtcG11AY.1190.000035
N187S187PTcaCca11AY.1200.000037
N187S187TTcaAca11AY.1200.000037
N187S187StcAtcG11AY.1200.000037
N187S187LtCatTa11AY.120.20.001285
N187S187StcAtcG11AY.1210.000135
N187S187StcAtcG11AY.130.000161
N187S187LtCatTa11AY.16.10.00047
N187S187PTcaCca11AY.23.10.000417
N187S187ATcaGca11AY.260.000028
N187S187StcAtcC11AY.260.000028
N187S187LtCatTa11AY.290.000016
N187S187StcAtcG11AY.29.10.000221
N187S187delTCA---11AY.30.00001
N187S187PTcaCca11AY.3.10.000085
N187S187StcAtcG11AY.320.000532
N187S187LtCatTa11AY.34.10.00051
N187S187RTCaAGa11AY.40.000002
N187S187StcAtcG11AY.4.20.000022
N187S187ATcaGca11AY.4.20.000022
N187S187PTcaCca11AY.4.2.10.000149
N187S187LtCatTa11AY.4.40.000409
N187S187TTcaAca11AY.430.000004
N187S187XtCatAa11AY.440.000006
N187S187ATcaGca11AY.450.000122
N187S187LtCatTa11AY.450.000122
N187S187delTCA---11AY.460.000104
N187S187LtCatTa11AY.46.20.000635
N187S187LtCatTa11AY.46.40.000165
N187S187PTcaCca11AY.46.60.000072
N187S187PTcaCca11AY.470.000031
N187S187LtCatTa11AY.490.003195
N187S187StcAtcT11AY.50.000021
N187S187delTCA---11AY.50.000021
N187S187StcAtcG11AY.5.40.000277
N187S187PTcaCca11AY.60.000041
N187S187PTcaCca11AY.610.000105
N187S187StcAtcG11AY.610.000105
N187S187StcAtcT11AY.7.20.000559
N187S187StcAtcG11AY.710.000475
N187S187StcAtcG11AY.750.000056
N187S187PTcaCca11AY.750.000056
N187S187LtCatTa11AY.75.10.00018
N187S187StcAtcG11AY.840.000437
N187S187PTcaCca11AY.90.000068
N187S187XtCatGa11AY.98.10.000048
N187S187StcAtcT11B0.000128
N187S187LtCatTa11B0.000128
N187S187TTcaAca11B.1.10.000018
N187S187LtCatTa11B.1.1.1860.003436
N187S187LtCatTa11B.1.1.1960.005714
N187S187LtCatTa11B.1.1.1980.001468
N187S187LtCatTa11B.1.1.2070.001182
N187S187StcAtcG11B.1.1.2140.000055
N187S187LtCatTa11B.1.1.2360.006897
N187S187PTcaCca11B.1.1.250.000569
N187S187LtCatTa11B.1.1.2630.001558
N187S187LtCatTa11B.1.1.2730.006757
N187S187LtCatTa11B.1.1.2770.000759
N187S187StcAtcC11B.1.1.280.000311
N187S187delTCA---11B.1.1.280.000311
N187S187LtCatTa11B.1.1.3120.001912
N187S187LtCatTa11B.1.1.330.000421
N187S187LtCatTa11B.1.1.3560.008547
N187S187StcAtcG11B.1.1.4130.006897
N187S187LtCatTa11B.1.1.4200.001006
N187S187ATcaGca11B.1.1.4340.000349
N187S187LtCatTa11B.1.1.4480.002033
N187S187LtCatTa11B.1.1.4640.001473
N187S187LtCatTa11B.1.1.5190.00004
N187S187ATcaGca11B.1.1.5190.00004
N187S187LtCatTa11B.1.1.5220.017241
N187S187LtCatTa11B.1.1.5230.001563
N187S187del1TcACc-11B.1.1.70.000001
N187S187LtCatTa11B.1.1.700.000341
N187S187LtCatTa11B.1.1.80.003584
N187S187LtCatTa11B.1.1390.000733
N187S187PTcaCca11B.1.1600.000031
N187S187LtCatTa11B.1.160.140.002119
N187S187XtCatAa11B.1.160.160.000929
N187S187ATcaGca11B.1.177.180.00116
N187S187NTCAAAC11B.1.177.630.002703
N187S187delTCA---11B.1.177.680.015152
N187S187LtCatTa11B.1.177.70.000165
N187S187PTcaCca11B.1.20.000009
N187S187delTCA---11B.1.20.000009
N187S187LtCatTa11B.1.214.10.02
N187S187PTcaCca11B.1.2210.000071
N187S187LtCatTa11B.1.2340.000132
N187S187StcAtcC11B.1.2340.000132
N187S187LtCatTa11B.1.2400.000216
N187S187LtCatTa11B.1.3110.000275
N187S187delTCA---11B.1.3510.00003
N187S187PTcaCca11B.1.360.000146
N187S187LtCatTa11B.1.36.360.000602
N187S187TTcaAca11B.1.3690.000285
N187S187PTcaCca11B.1.3690.000285
N187S187LtCatTa11B.1.3750.00082
N187S187LtCatTa11B.1.4090.000781
N187S187delTCA---11B.1.416.10.001563
N187S187LtCatTa11B.1.4270.00005
N187S187delTCA---11B.1.4270.00005
N187S187StcAtcT11B.1.4270.00005
N187S187StcAtcC11B.1.4290.000024
N187S187PTcaCca11B.1.4290.000024
N187S187LtCatTa11B.1.4600.017857
N187S187delTCA---11B.1.4650.003802
N187S187ATcaGca11B.1.5090.000866
N187S187LtCatTa11B.1.5250.000113
N187S187delTCA---11B.1.5250.000113
N187S187StcAtcG11B.1.5260.000024
N187S187LtCatTa11B.1.5330.009615
N187S187delTCA---11B.1.5600.00463
N187S187TTcaAca11B.1.5750.000303
N187S187delTCA---11B.1.5760.000907
N187S187LtCatTa11B.1.5760.000907
N187S187LtCatTa11B.1.5820.000491
N187S187XtCatAa11B.1.5960.000087
N187S187ATcaGca11B.1.5960.000087
N187S187StcAtcT11B.1.5960.000087
N187S187delTCA---11B.1.5960.000087
N187S187NTCAAAC11B.1.617.10.000129
N187S187delTCA---11B.1.617.10.000129
N187S187PTcaCca11B.1.617.10.000129
N187S187delTCA---11B.1.617.20.000004
N187S187ATcaGca11B.1.617.20.000004
N187S187StcAtcG11B.1.6370.000073
N187S187StcAtcG11B.100.008264
N187S187LtCatTa11B.230.002924
N187S187LtCatTa11B.4.10.018868
N187S187LtCatTa11B.610.005747
N187S187LtCatTa11C.1.20.004255
N187S187XtCatAa11C.350.000774
N187S187PTcaCca11C.370.000116
N187S187delTCA---11C.37.10.002618
N187S187LtCatTa11C.60.037037
N187S187delTCA---11P.10.000016
N187S187LtCatTa11P.1.120.000484
N187S187TTcaAca11P.1.130.000898
N187S187ATcaGca11P.1.150.000232
N187S187delTCA---11P.1.150.000232
N187S187LtCatTa11P.1.170.000162
N187S187PTcaCca11Q.80.000165
N187S187FtCAtTT11R.10.00009