CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 186

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	186	S186Y		nonsyn	tCc	tAc	1482	1482	1	28829-28831
N	186	S186S		syn	tcC	tcT	1343	922	0.686523	28829-28831
N	186	S186S		syn	tcC	tcA	1343	413	0.30752	28829-28831
N	186	S186S		syn	tcC	tcG	1343	8	0.00595681	28829-28831
N	186	S186F		nonsyn	tCc	tTc	686	686	1	28829-28831
N	186	S186P		nonsyn	Tcc	Ccc	163	163	1	28829-28831
N	186	S186A		nonsyn	Tcc	Gcc	58	58	1	28829-28831
N	186	S186del		del	TCC	---	51	51	1	28829-28831
N	186	S186T		nonsyn	Tcc	Acc	23	20	0.869565	28829-28831
N	186	S186T		nonsyn	TcC	AcA	23	2	0.0869565	28829-28831
N	186	S186T		nonsyn	TcC	AcG	23	1	0.0434783	28829-28831
N	186	S186C		nonsyn	tCc	tGc	5	4	0.8	28829-28831
N	186	S186C		nonsyn	tCC	tGT	5	1	0.2	28829-28831
N	186	S186L		nonsyn	TCc	CTc	3	2	0.666667	28829-28831
N	186	S186L		nonsyn	tCC	tTA	3	1	0.333333	28829-28831
N	186	S186del1		del	tCc	t-c	2	2	1	28829-28831
N	186	S186N		nonsyn	TCc	AAc	2	2	1	28829-28831

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	186	S186Y	tCc	tAc	1482	1482	All	0.000283
N	186	S186S	tcC	tcT	922	1343	All	0.000176
N	186	S186S	tcC	tcA	413	1343	All	0.000079
N	186	S186S	tcC	tcG	8	1343	All	0.000002
N	186	S186Y	tCc	tAc	1127	1127	B.1.367	0.893027
N	186	S186F	tCc	tTc	686	686	All	0.000131
N	186	S186F	tCc	tTc	294	294	B.1.631	0.989899
N	186	S186F	tCc	tTc	234	234	B.1	0.002143
N	186	S186Y	tCc	tAc	215	215	B.1.597	0.99537
N	186	S186S	tcC	tcT	176	183	AY.44	0.001071
N	186	S186S	tcC	tcA	7	183	AY.44	0.000043
N	186	S186S	tcC	tcT	175	176	B.1.526	0.004113
N	186	S186S	tcC	tcA	1	176	B.1.526	0.000024
N	186	S186P	Tcc	Ccc	163	163	All	0.000031
N	186	S186S	tcC	tcA	131	141	B.1.2	0.001154
N	186	S186S	tcC	tcT	10	141	B.1.2	0.000088
N	186	S186Y	tCc	tAc	97	97	B.1	0.000888
N	186	S186S	tcC	tcA	81	81	B.1.575	0.024575
N	186	S186S	tcC	tcT	66	75	B.1.1.7	0.000059
N	186	S186S	tcC	tcA	9	75	B.1.1.7	0.000008
N	186	S186S	tcC	tcT	69	74	B.1.617.2	0.00026
N	186	S186S	tcC	tcA	5	74	B.1.617.2	0.000019
N	186	S186S	tcC	tcT	61	61	B.1.599	0.222628
N	186	S186A	Tcc	Gcc	58	58	All	0.000011
N	186	S186del	TCC	---	51	51	All	0.00001
N	186	S186S	tcC	tcT	49	50	AY.116	0.014052
N	186	S186S	tcC	tcA	1	50	AY.116	0.000287
N	186	S186S	tcC	tcA	26	49	AY.25	0.000156
N	186	S186S	tcC	tcT	23	49	AY.25	0.000138
N	186	S186S	tcC	tcT	19	38	AY.4	0.00003
N	186	S186S	tcC	tcA	16	38	AY.4	0.000025
N	186	S186S	tcC	tcG	3	38	AY.4	0.000005
N	186	S186P	Tcc	Ccc	36	36	AY.43	0.000159
N	186	S186S	tcC	tcA	36	36	B.1.36.18	0.015126
N	186	S186S	tcC	tcA	27	30	AY.103	0.000168
N	186	S186S	tcC	tcT	3	30	AY.103	0.000019
N	186	S186S	tcC	tcA	22	27	AY.3	0.000219
N	186	S186S	tcC	tcT	5	27	AY.3	0.00005
N	186	S186S	tcC	tcT	20	27	B.1	0.000183
N	186	S186S	tcC	tcA	7	27	B.1	0.000064
N	186	S186S	tcC	tcT	25	25	AY.117	0.002113
N	186	S186S	tcC	tcT	24	25	B.1.429	0.000565
N	186	S186S	tcC	tcA	1	25	B.1.429	0.000024
N	186	S186T	Tcc	Acc	20	23	All	0.000004
N	186	S186T	TcC	AcA	2	23	All	0
N	186	S186T	TcC	AcG	1	23	All	0
N	186	S186F	tCc	tTc	23	23	AY.103	0.000143
N	186	S186A	Tcc	Gcc	23	23	B.1.1	0.000417
N	186	S186S	tcC	tcT	20	21	AY.9.2	0.000735
N	186	S186S	tcC	tcA	1	21	AY.9.2	0.000037
N	186	S186F	tCc	tTc	21	21	B.4	0.046358
N	186	S186S	tcC	tcT	19	20	AY.98	0.001501
N	186	S186S	tcC	tcA	1	20	AY.98	0.000079
N	186	S186P	Tcc	Ccc	16	16	K.1	0.380952
N	186	S186F	tCc	tTc	15	15	AY.4	0.000023
N	186	S186F	tCc	tTc	15	15	B.1.177.73	0.008494
N	186	S186S	tcC	tcT	13	13	AY.32	0.006922
N	186	S186Y	tCc	tAc	13	13	B	0.001662
N	186	S186P	Tcc	Ccc	12	12	AY.4	0.000019
N	186	S186S	tcC	tcT	12	12	AY.43	0.000053
N	186	S186del	TCC	---	12	12	B.1	0.00011
N	186	S186A	Tcc	Gcc	12	12	B.1.1.7	0.000011
N	186	S186S	tcC	tcT	12	12	B.1.621	0.001062
N	186	S186F	tCc	tTc	11	11	B.1.574	0.023656
N	186	S186P	Tcc	Ccc	9	9	B.1.160	0.000281
N	186	S186S	tcC	tcA	6	8	AY.99.2	0.000553
N	186	S186S	tcC	tcT	2	8	AY.99.2	0.000184
N	186	S186del	TCC	---	8	8	B.1.1.7	0.000007
N	186	S186P	Tcc	Ccc	7	7	B.1	0.000064
N	186	S186T	Tcc	Acc	6	7	B.1.1.7	0.000005
N	186	S186T	TcC	AcA	1	7	B.1.1.7	0.000001
N	186	S186S	tcC	tcA	6	7	B.1.177	0.000079
N	186	S186S	tcC	tcT	1	7	B.1.177	0.000013
N	186	S186S	tcC	tcA	6	7	B.1.596	0.000523
N	186	S186S	tcC	tcT	1	7	B.1.596	0.000087
N	186	S186F	tCc	tTc	7	7	B.1.617.2	0.000026
N	186	S186S	tcC	tcT	5	6	AY.20	0.000194
N	186	S186S	tcC	tcA	1	6	AY.20	0.000039
N	186	S186S	tcC	tcA	4	6	AY.23	0.000279
N	186	S186S	tcC	tcT	2	6	AY.23	0.000139
N	186	S186S	tcC	tcT	6	6	AY.98.1	0.000291
N	186	S186S	tcC	tcT	5	6	B.1.1	0.000091
N	186	S186S	tcC	tcG	1	6	B.1.1	0.000018
N	186	S186S	tcC	tcT	6	6	B.1.1.25	0.003411
N	186	S186F	tCc	tTc	6	6	B.1.2	0.000053
N	186	S186A	Tcc	Gcc	6	6	B.1.427	0.000303
N	186	S186T	Tcc	Acc	6	6	B.1.617.2	0.000023
N	186	S186C	tCc	tGc	4	5	All	0.000001
N	186	S186C	tCC	tGT	1	5	All	0
N	186	S186S	tcC	tcT	5	5	AY.41	0.00147
N	186	S186P	Tcc	Ccc	5	5	B.1.1.189	0.007564
N	186	S186S	tcC	tcT	5	5	C.1	0.011962
N	186	S186S	tcC	tcT	5	5	P.1	0.000079
N	186	S186F	tCc	tTc	5	5	P.1.14	0.000239
N	186	S186F	tCc	tTc	4	4	A.5	0.007692
N	186	S186S	tcC	tcT	3	4	AY.102	0.00008
N	186	S186S	tcC	tcA	1	4	AY.102	0.000027
N	186	S186P	Tcc	Ccc	4	4	AY.25	0.000024
N	186	S186A	Tcc	Gcc	4	4	AY.3	0.00004
N	186	S186S	tcC	tcT	4	4	AY.47	0.000124
N	186	S186P	Tcc	Ccc	4	4	B.1.1.7	0.000004
N	186	S186P	Tcc	Ccc	4	4	B.1.177	0.000053
N	186	S186P	Tcc	Ccc	4	4	B.1.258	0.000266
N	186	S186P	Tcc	Ccc	4	4	B.1.617.2	0.000015
N	186	S186A	Tcc	Gcc	4	4	B.1.621	0.000354
N	186	S186T	TcC	AcA	1	3		0.055556
N	186	S186T	Tcc	Acc	1	3		0.055556
N	186	S186T	TcC	AcG	1	3		0.055556
N	186	S186L	TCc	CTc	2	3	All	0
N	186	S186L	tCC	tTA	1	3	All	0
N	186	S186S	tcC	tcT	3	3	AY.100	0.000138
N	186	S186P	Tcc	Ccc	3	3	AY.103	0.000019
N	186	S186S	tcC	tcT	3	3	AY.118	0.000188
N	186	S186S	tcC	tcT	3	3	AY.119	0.000106
N	186	S186S	tcC	tcT	3	3	AY.121	0.000406
N	186	S186S	tcC	tcT	2	3	AY.29	0.000032
N	186	S186S	tcC	tcA	1	3	AY.29	0.000016
N	186	S186F	tCc	tTc	3	3	AY.4.2	0.000065
N	186	S186A	Tcc	Gcc	3	3	AY.44	0.000018
N	186	S186S	tcC	tcG	3	3	AY.69	0.00056
N	186	S186S	tcC	tcT	3	3	AY.70	0.000626
N	186	S186P	Tcc	Ccc	3	3	B.1.1	0.000054
N	186	S186S	tcC	tcT	3	3	B.1.1.316	0.002775
N	186	S186Y	tCc	tAc	3	3	B.1.1.7	0.000003
N	186	S186S	tcC	tcT	3	3	B.1.160	0.000094
N	186	S186Y	tCc	tAc	3	3	B.1.177	0.00004
N	186	S186P	Tcc	Ccc	3	3	B.1.221	0.000213
N	186	S186S	tcC	tcA	3	3	B.1.221	0.000213
N	186	S186P	Tcc	Ccc	3	3	B.1.427	0.000151
N	186	S186F	tCc	tTc	3	3	B.1.526	0.000071
N	186	S186S	tcC	tcT	3	3	B.1.606	0.018072
N	186	S186P	Tcc	Ccc	3	3	B.6.6	0.002667
N	186	S186P	Tcc	Ccc	3	3	C.1.2	0.012766
N	186	S186S	tcC	tcT	3	3	Q.2	0.00184
N	186	S186S	tcC	tcA	1	2		0.055556
N	186	S186S	tcC	tcG	1	2		0.055556
N	186	S186del1	tCc	t-c	2	2	All	0
N	186	S186N	TCc	AAc	2	2	All	0
N	186	S186A	Tcc	Gcc	2	2	AY.14	0.000176
N	186	S186S	tcC	tcT	2	2	AY.26	0.000057
N	186	S186P	Tcc	Ccc	2	2	AY.3	0.00002
N	186	S186S	tcC	tcT	2	2	AY.33	0.000134
N	186	S186S	tcC	tcT	2	2	AY.39.1	0.000079
N	186	S186del	TCC	---	2	2	AY.40	0.001929
N	186	S186del	TCC	---	2	2	AY.43	0.000009
N	186	S186S	tcC	tcT	2	2	AY.5	0.000041
N	186	S186del	TCC	---	2	2	AY.50	0.001599
N	186	S186del	TCC	---	2	2	AY.75	0.000112
N	186	S186S	tcC	tcT	2	2	AY.82	0.002714
N	186	S186S	tcC	tcA	2	2	AY.9	0.000135
N	186	S186S	tcC	tcA	2	2	AY.9.1	0.000167
N	186	S186del	TCC	---	2	2	AY.9.2	0.000073
N	186	S186P	Tcc	Ccc	2	2	AY.98	0.000158
N	186	S186A	Tcc	Gcc	2	2	B.1	0.000018
N	186	S186T	Tcc	Acc	2	2	B.1	0.000018
N	186	S186P	Tcc	Ccc	2	2	B.1.1.214	0.000111
N	186	S186F	tCc	tTc	2	2	B.1.1.222	0.000408
N	186	S186P	Tcc	Ccc	2	2	B.1.1.284	0.000215
N	186	S186S	tcC	tcT	2	2	B.1.1.33	0.000842
N	186	S186F	tCc	tTc	2	2	B.1.1.7	0.000002
N	186	S186F	tCc	tTc	2	2	B.1.104	0.00738
N	186	S186P	Tcc	Ccc	2	2	B.1.158	0.047619
N	186	S186del	TCC	---	2	2	B.1.177	0.000026
N	186	S186F	tCc	tTc	2	2	B.1.177.21	0.000153
N	186	S186P	Tcc	Ccc	2	2	B.1.177.60	0.000437
N	186	S186S	tcC	tcT	2	2	B.1.177.60	0.000437
N	186	S186Y	tCc	tAc	2	2	B.1.177.73	0.001133
N	186	S186Y	tCc	tAc	2	2	B.1.2	0.000018
N	186	S186Y	tCc	tAc	2	2	B.1.258	0.000133
N	186	S186F	tCc	tTc	2	2	B.1.311	0.000549
N	186	S186P	Tcc	Ccc	2	2	B.1.596	0.000174
N	186	S186P	Tcc	Ccc	2	2	B.1.9	0.012346
N	186	S186S	tcC	tcT	1	2	C.37	0.000116
N	186	S186S	tcC	tcA	1	2	C.37	0.000116
N	186	S186del	TCC	---	2	2	C.37.1	0.005236
N	186	S186T	Tcc	Acc	2	2	P.1	0.000032
N	186	S186S	tcC	tcT	2	2	P.2	0.000373
N	186	S186P	Tcc	Ccc	2	2	P.5	0.027397
N	186	S186Y	tCc	tAc	1	1	A	0.000387
N	186	S186S	tcC	tcT	1	1	A	0.000387
N	186	S186S	tcC	tcA	1	1	A.2	0.000662
N	186	S186Y	tCc	tAc	1	1	A.28	0.002646
N	186	S186P	Tcc	Ccc	1	1	AY.100	0.000046
N	186	S186F	tCc	tTc	1	1	AY.113	0.000142
N	186	S186F	tCc	tTc	1	1	AY.114	0.000231
N	186	S186P	Tcc	Ccc	1	1	AY.120	0.000037
N	186	S186S	tcC	tcT	1	1	AY.120	0.000037
N	186	S186F	tCc	tTc	1	1	AY.120.1	0.000321
N	186	S186F	tCc	tTc	1	1	AY.16.1	0.00047
N	186	S186P	Tcc	Ccc	1	1	AY.16.1	0.00047
N	186	S186T	Tcc	Acc	1	1	AY.16.1	0.00047
N	186	S186P	Tcc	Ccc	1	1	AY.23	0.00007
N	186	S186A	Tcc	Gcc	1	1	AY.25	0.000006
N	186	S186del1	tCc	t-c	1	1	AY.25	0.000006
N	186	S186Y	tCc	tAc	1	1	AY.25	0.000006
N	186	S186F	tCc	tTc	1	1	AY.25	0.000006
N	186	S186F	tCc	tTc	1	1	AY.26	0.000028
N	186	S186F	tCc	tTc	1	1	AY.27	0.000065
N	186	S186F	tCc	tTc	1	1	AY.29	0.000016
N	186	S186F	tCc	tTc	1	1	AY.29.1	0.000221
N	186	S186S	tcC	tcT	1	1	AY.29.1	0.000221
N	186	S186del	TCC	---	1	1	AY.3	0.00001
N	186	S186C	tCc	tGc	1	1	AY.3	0.00001
N	186	S186F	tCc	tTc	1	1	AY.3	0.00001
N	186	S186P	Tcc	Ccc	1	1	AY.3.1	0.000085
N	186	S186S	tcC	tcA	1	1	AY.3.1	0.000085
N	186	S186P	Tcc	Ccc	1	1	AY.32	0.000532
N	186	S186S	tcC	tcT	1	1	AY.39	0.000025
N	186	S186P	Tcc	Ccc	1	1	AY.39	0.000025
N	186	S186T	Tcc	Acc	1	1	AY.4	0.000002
N	186	S186C	tCC	tGT	1	1	AY.4	0.000002
N	186	S186P	Tcc	Ccc	1	1	AY.44	0.000006
N	186	S186Y	tCc	tAc	1	1	AY.44	0.000006
N	186	S186F	tCc	tTc	1	1	AY.44	0.000006
N	186	S186del	TCC	---	1	1	AY.46	0.000104
N	186	S186P	Tcc	Ccc	1	1	AY.47	0.000031
N	186	S186F	tCc	tTc	1	1	AY.47	0.000031
N	186	S186del	TCC	---	1	1	AY.5	0.000021
N	186	S186Y	tCc	tAc	1	1	AY.52	0.000814
N	186	S186S	tcC	tcT	1	1	AY.56	0.001605
N	186	S186L	TCc	CTc	1	1	AY.59	0.00053
N	186	S186F	tCc	tTc	1	1	AY.6	0.000041
N	186	S186P	Tcc	Ccc	1	1	AY.68	0.000274
N	186	S186P	Tcc	Ccc	1	1	AY.7.1	0.000113
N	186	S186S	tcC	tcT	1	1	AY.7.2	0.000559
N	186	S186P	Tcc	Ccc	1	1	AY.75	0.000056
N	186	S186S	tcC	tcT	1	1	AY.75.1	0.00018
N	186	S186S	tcC	tcT	1	1	AY.76	0.004831
N	186	S186S	tcC	tcT	1	1	AY.84	0.000437
N	186	S186P	Tcc	Ccc	1	1	AY.9	0.000068
N	186	S186del1	tCc	t-c	1	1	AY.9.1	0.000084
N	186	S186F	tCc	tTc	1	1	B	0.000128
N	186	S186P	Tcc	Ccc	1	1	B	0.000128
N	186	S186L	TCc	CTc	1	1	B.1	0.000009
N	186	S186F	tCc	tTc	1	1	B.1.1	0.000018
N	186	S186F	tCc	tTc	1	1	B.1.1.159	0.004673
N	186	S186S	tcC	tcA	1	1	B.1.1.214	0.000055
N	186	S186S	tcC	tcA	1	1	B.1.1.226	0.005814
N	186	S186S	tcC	tcT	1	1	B.1.1.28	0.000311
N	186	S186F	tCc	tTc	1	1	B.1.1.311	0.000358
N	186	S186P	Tcc	Ccc	1	1	B.1.1.316	0.000925
N	186	S186F	tCc	tTc	1	1	B.1.1.37	0.000193
N	186	S186F	tCc	tTc	1	1	B.1.1.371	0.010417
N	186	S186S	tcC	tcA	1	1	B.1.1.434	0.000349
N	186	S186F	tCc	tTc	1	1	B.1.1.61	0.008772
N	186	S186S	tcC	tcT	1	1	B.1.110.3	0.000718
N	186	S186F	tCc	tTc	1	1	B.1.12	0.008
N	186	S186Y	tCc	tAc	1	1	B.1.157	0.002985
N	186	S186Y	tCc	tAc	1	1	B.1.160	0.000031
N	186	S186T	Tcc	Acc	1	1	B.1.177	0.000013
N	186	S186S	tcC	tcT	1	1	B.1.177.21	0.000076
N	186	S186Y	tCc	tAc	1	1	B.1.177.23	0.003236
N	186	S186Y	tCc	tAc	1	1	B.1.177.31	0.011494
N	186	S186S	tcC	tcT	1	1	B.1.177.53	0.002392
N	186	S186Y	tCc	tAc	1	1	B.1.177.6	0.000977
N	186	S186F	tCc	tTc	1	1	B.1.177.60	0.000218
N	186	S186C	tCc	tGc	1	1	B.1.177.63	0.002703
N	186	S186del	TCC	---	1	1	B.1.177.68	0.015152
N	186	S186Y	tCc	tAc	1	1	B.1.177.86	0.000183
N	186	S186L	tCC	tTA	1	1	B.1.2	0.000009
N	186	S186del	TCC	---	1	1	B.1.2	0.000009
N	186	S186N	TCc	AAc	1	1	B.1.206	0.000816
N	186	S186F	tCc	tTc	1	1	B.1.214	0.003663
N	186	S186Y	tCc	tAc	1	1	B.1.221	0.000071
N	186	S186S	tcC	tcT	1	1	B.1.234	0.000132
N	186	S186S	tcC	tcT	1	1	B.1.243	0.00007
N	186	S186F	tCc	tTc	1	1	B.1.243	0.00007
N	186	S186F	tCc	tTc	1	1	B.1.258	0.000067
N	186	S186S	tcC	tcT	1	1	B.1.311	0.000275
N	186	S186F	tCc	tTc	1	1	B.1.314	0.007519
N	186	S186Y	tCc	tAc	1	1	B.1.324	0.001605
N	186	S186S	tcC	tcT	1	1	B.1.349	0.000715
N	186	S186del	TCC	---	1	1	B.1.351	0.00003
N	186	S186Y	tCc	tAc	1	1	B.1.356	0.001727
N	186	S186S	tcC	tcT	1	1	B.1.36	0.000146
N	186	S186N	TCc	AAc	1	1	B.1.36	0.000146
N	186	S186F	tCc	tTc	1	1	B.1.36.1	0.00114
N	186	S186P	Tcc	Ccc	1	1	B.1.369	0.000285
N	186	S186S	tcC	tcT	1	1	B.1.369	0.000285
N	186	S186Y	tCc	tAc	1	1	B.1.397	0.004854
N	186	S186S	tcC	tcT	1	1	B.1.400	0.000429
N	186	S186del	TCC	---	1	1	B.1.416.1	0.001563
N	186	S186del	TCC	---	1	1	B.1.427	0.00005
N	186	S186F	tCc	tTc	1	1	B.1.427	0.00005
N	186	S186P	Tcc	Ccc	1	1	B.1.429	0.000024
N	186	S186F	tCc	tTc	1	1	B.1.441	0.009615
N	186	S186del	TCC	---	1	1	B.1.465	0.003802
N	186	S186S	tcC	tcT	1	1	B.1.521	0.004975
N	186	S186del	TCC	---	1	1	B.1.525	0.000113
N	186	S186F	tCc	tTc	1	1	B.1.530	0.007143
N	186	S186Y	tCc	tAc	1	1	B.1.533	0.009615
N	186	S186S	tcC	tcT	1	1	B.1.541	0.004425
N	186	S186S	tcC	tcT	1	1	B.1.552	0.015152
N	186	S186del	TCC	---	1	1	B.1.560	0.00463
N	186	S186del	TCC	---	1	1	B.1.576	0.000907
N	186	S186S	tcC	tcA	1	1	B.1.595	0.000261
N	186	S186Y	tCc	tAc	1	1	B.1.596	0.000087
N	186	S186del	TCC	---	1	1	B.1.596	0.000087
N	186	S186S	tcC	tcA	1	1	B.1.617.1	0.000129
N	186	S186del	TCC	---	1	1	B.1.617.1	0.000129
N	186	S186C	tCc	tGc	1	1	B.1.617.1	0.000129
N	186	S186del	TCC	---	1	1	B.1.617.2	0.000004
N	186	S186A	Tcc	Gcc	1	1	B.1.617.2	0.000004
N	186	S186F	tCc	tTc	1	1	B.1.619	0.000871
N	186	S186P	Tcc	Ccc	1	1	B.1.621	0.000089
N	186	S186F	tCc	tTc	1	1	B.1.627	0.00202
N	186	S186F	tCc	tTc	1	1	B.1.628	0.000352
N	186	S186Y	tCc	tAc	1	1	B.4.1	0.018868
N	186	S186S	tcC	tcT	1	1	C.3	0.007634
N	186	S186C	tCc	tGc	1	1	C.35	0.000774
N	186	S186S	tcC	tcT	1	1	C.37.1	0.002618
N	186	S186F	tCc	tTc	1	1	D.2	0.000075
N	186	S186P	Tcc	Ccc	1	1	D.2	0.000075
N	186	S186P	Tcc	Ccc	1	1	N.6	0.007092
N	186	S186P	Tcc	Ccc	1	1	P.1	0.000016
N	186	S186del	TCC	---	1	1	P.1	0.000016
N	186	S186F	tCc	tTc	1	1	P.1.15	0.000232
N	186	S186del	TCC	---	1	1	P.1.15	0.000232
N	186	S186P	Tcc	Ccc	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.