CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 182

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	182	A182S		nonsyn	Gcc	Tcc	6305	6302	0.999524	28817-28819
N	182	A182S		nonsyn	GcC	TcT	6305	3	0.000475813	28817-28819
N	182	A182A		syn	gcC	gcT	871	436	0.500574	28817-28819
N	182	A182A		syn	gcC	gcA	871	414	0.475316	28817-28819
N	182	A182A		syn	gcC	gcG	871	21	0.0241102	28817-28819
N	182	A182V		nonsyn	gCc	gTc	264	262	0.992424	28817-28819
N	182	A182V		nonsyn	gCC	gTT	264	2	0.00757576	28817-28819
N	182	A182T		nonsyn	Gcc	Acc	239	238	0.995816	28817-28819
N	182	A182T		nonsyn	GcC	AcT	239	1	0.0041841	28817-28819
N	182	A182P		nonsyn	Gcc	Ccc	112	111	0.991071	28817-28819
N	182	A182P		nonsyn	GcC	CcT	112	1	0.00892857	28817-28819
N	182	A182D		nonsyn	gCc	gAc	97	97	1	28817-28819
N	182	A182del		del	GCC	---	62	62	1	28817-28819
N	182	A182F		nonsyn	GCc	TTc	12	12	1	28817-28819
N	182	A182del1		del	gcC	gc-	7	3	0.428571	28817-28819
N	182	A182del1		del	gCc	g-c	7	3	0.428571	28817-28819
N	182	A182del1		del	GCc	A-c	7	1	0.142857	28817-28819
N	182	A182Y		nonsyn	GCc	TAc	5	5	1	28817-28819
N	182	A182G		nonsyn	gCc	gGc	2	2	1	28817-28819
N	182	A182N		nonsyn	GCc	AAc	2	2	1	28817-28819
N	182	A182L		nonsyn	GCc	CTc	1	1	1	28817-28819
N	182	A182E		nonsyn	gCC	gAA	1	1	1	28817-28819
N	182	A182H		nonsyn	GCc	CAc	1	1	1	28817-28819

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	182	A182S	Gcc	Tcc	6302	6305	All	0.001205
N	182	A182S	GcC	TcT	3	6305	All	0.000001
N	182	A182S	Gcc	Tcc	1459	1459	AY.4	0.002271
N	182	A182S	Gcc	Tcc	1069	1069	B.1.1.7	0.000957
N	182	A182A	gcC	gcT	436	871	All	0.000083
N	182	A182A	gcC	gcA	414	871	All	0.000079
N	182	A182A	gcC	gcG	21	871	All	0.000004
N	182	A182S	Gcc	Tcc	522	522	B.1.258.7	0.998088
N	182	A182S	Gcc	Tcc	290	290	B.1.2	0.002554
N	182	A182V	gCc	gTc	262	264	All	0.00005
N	182	A182V	gCC	gTT	2	264	All	0
N	182	A182T	Gcc	Acc	238	239	All	0.000046
N	182	A182T	GcC	AcT	1	239	All	0
N	182	A182S	Gcc	Tcc	210	210	B.1.427	0.010604
N	182	A182S	Gcc	Tcc	199	199	B.1.617.2	0.000749
N	182	A182A	gcC	gcA	138	195	B.1.1.7	0.000124
N	182	A182A	gcC	gcT	55	195	B.1.1.7	0.000049
N	182	A182A	gcC	gcG	2	195	B.1.1.7	0.000002
N	182	A182S	Gcc	Tcc	164	164	AY.103	0.001018
N	182	A182S	Gcc	Tcc	157	157	AY.43	0.000696
N	182	A182S	Gcc	Tcc	147	147	AY.44	0.000895
N	182	A182S	Gcc	Tcc	147	147	B.1	0.001346
N	182	A182S	Gcc	Tcc	130	130	B.1.221	0.009234
N	182	A182P	Gcc	Ccc	111	112	All	0.000021
N	182	A182P	GcC	CcT	1	112	All	0
N	182	A182V	gCc	gTc	108	110	AY.4	0.000168
N	182	A182V	gCC	gTT	2	110	AY.4	0.000003
N	182	A182A	gcC	gcA	95	103	AY.25	0.000571
N	182	A182A	gcC	gcT	8	103	AY.25	0.000048
N	182	A182D	gCc	gAc	97	97	All	0.000019
N	182	A182S	Gcc	Tcc	80	80	P.1	0.00126
N	182	A182S	Gcc	Tcc	75	75	AY.3	0.000746
N	182	A182A	gcC	gcA	59	73	AY.103	0.000366
N	182	A182A	gcC	gcT	14	73	AY.103	0.000087
N	182	A182T	Gcc	Acc	71	71	B.1.1.7	0.000064
N	182	A182del	GCC	---	62	62	All	0.000012
N	182	A182S	Gcc	Tcc	57	57	B.1.1	0.001034
N	182	A182S	Gcc	Tcc	52	52	B.1.160	0.001622
N	182	A182S	Gcc	Tcc	51	51	AY.98.1	0.00247
N	182	A182S	Gcc	Tcc	51	51	B.1.243	0.003549
N	182	A182S	Gcc	Tcc	49	49	AY.33	0.003272
N	182	A182D	gCc	gAc	46	46	P.2	0.008585
N	182	A182S	Gcc	Tcc	44	44	AY.25	0.000265
N	182	A182S	Gcc	Tcc	44	44	AY.29	0.000694
N	182	A182S	Gcc	Tcc	43	43	AY.6	0.001769
N	182	A182S	Gcc	Tcc	42	42	D.2	0.003152
N	182	A182S	Gcc	Tcc	41	41	B.1.1.269	0.05548
N	182	A182S	Gcc	Tcc	40	40	B.1.1.214	0.002218
N	182	A182S	Gcc	Tcc	38	38	AY.102	0.001008
N	182	A182S	Gcc	Tcc	35	35	AY.39	0.000865
N	182	A182P	Gcc	Ccc	33	33	AY.4	0.000051
N	182	A182P	Gcc	Ccc	31	31	AY.103	0.000192
N	182	A182A	gcC	gcT	16	31	AY.43	0.000071
N	182	A182A	gcC	gcA	15	31	AY.43	0.000066
N	182	A182A	gcC	gcT	17	31	B.1.2	0.00015
N	182	A182A	gcC	gcA	14	31	B.1.2	0.000123
N	182	A182S	Gcc	Tcc	30	30	AY.4.5	0.003225
N	182	A182A	gcC	gcT	30	30	B.1.36	0.004377
N	182	A182S	Gcc	Tcc	29	29	B.1.429	0.000682
N	182	A182A	gcC	gcT	14	29	B.1.617.2	0.000053
N	182	A182A	gcC	gcA	8	29	B.1.617.2	0.00003
N	182	A182A	gcC	gcG	7	29	B.1.617.2	0.000026
N	182	A182S	Gcc	Tcc	28	28	AY.42	0.001126
N	182	A182S	Gcc	Tcc	28	28	AY.45	0.003407
N	182	A182S	Gcc	Tcc	27	27	AY.26	0.000764
N	182	A182A	gcC	gcT	15	26	AY.4	0.000023
N	182	A182A	gcC	gcA	11	26	AY.4	0.000017
N	182	A182A	gcC	gcT	14	25	B.1	0.000128
N	182	A182A	gcC	gcG	6	25	B.1	0.000055
N	182	A182A	gcC	gcA	5	25	B.1	0.000046
N	182	A182A	gcC	gcT	17	24	AY.5	0.000351
N	182	A182A	gcC	gcA	7	24	AY.5	0.000145
N	182	A182S	Gcc	Tcc	24	24	B.1.1.318	0.007242
N	182	A182V	gCc	gTc	24	24	B.1.1.7	0.000021
N	182	A182V	gCc	gTc	23	23	AY.29	0.000363
N	182	A182S	Gcc	Tcc	23	23	B.1.177	0.000303
N	182	A182A	gcC	gcT	23	23	B.1.177.61	1
N	182	A182A	gcC	gcT	21	21	B.1.551	0.027097
N	182	A182S	Gcc	Tcc	20	20	B.1.1.441	1
N	182	A182S	Gcc	Tcc	20	20	B.1.1.519	0.000794
N	182	A182D	gCc	gAc	20	20	B.1.1.7	0.000018
N	182	A182S	Gcc	Tcc	17	20	B.1.351	0.000505
N	182	A182S	GcC	TcT	3	20	B.1.351	0.000089
N	182	A182A	gcC	gcA	10	19	AY.44	0.000061
N	182	A182A	gcC	gcG	5	19	AY.44	0.00003
N	182	A182A	gcC	gcT	4	19	AY.44	0.000024
N	182	A182S	Gcc	Tcc	19	19	B.1.575	0.005765
N	182	A182S	Gcc	Tcc	18	18	AY.9.2	0.000661
N	182	A182S	Gcc	Tcc	18	18	B.1.1.50	0.01222
N	182	A182S	Gcc	Tcc	18	18	B.1.36.24	0.111111
N	182	A182S	Gcc	Tcc	17	17	AY.61	0.001781
N	182	A182S	Gcc	Tcc	17	17	B.1.177.46	0.015611
N	182	A182S	Gcc	Tcc	17	17	B.1.466.2	0.006651
N	182	A182S	Gcc	Tcc	15	15	AY.119	0.00053
N	182	A182T	Gcc	Acc	15	15	AY.43	0.000066
N	182	A182S	Gcc	Tcc	15	15	AY.9	0.001014
N	182	A182T	Gcc	Acc	15	15	B.1	0.000137
N	182	A182del	GCC	---	15	15	B.1	0.000137
N	182	A182A	gcC	gcT	13	15	B.1.258	0.000865
N	182	A182A	gcC	gcA	2	15	B.1.258	0.000133
N	182	A182A	gcC	gcT	15	15	B.1.631	0.050505
N	182	A182S	Gcc	Tcc	14	14	AY.46.1	0.014374
N	182	A182S	Gcc	Tcc	14	14	B.1.177.34	0.736842
N	182	A182S	Gcc	Tcc	14	14	B.1.258	0.000932
N	182	A182A	gcC	gcT	13	13	AY.82	0.017639
N	182	A182S	Gcc	Tcc	13	13	B.1.311	0.003569
N	182	A182S	Gcc	Tcc	13	13	P.1.17	0.002103
N	182	A182F	GCc	TTc	12	12	All	0.000002
N	182	A182S	Gcc	Tcc	12	12	AY.23	0.000837
N	182	A182P	Gcc	Ccc	12	12	AY.4.5	0.00129
N	182	A182S	Gcc	Tcc	12	12	B.1.526	0.000282
N	182	A182T	Gcc	Acc	11	11	AY.4	0.000017
N	182	A182S	Gcc	Tcc	11	11	AY.75	0.000616
N	182	A182S	Gcc	Tcc	11	11	B.1.177.67	0.083969
N	182	A182T	Gcc	Acc	11	11	B.1.2	0.000097
N	182	A182S	Gcc	Tcc	11	11	B.1.565	0.008914
N	182	A182S	Gcc	Tcc	11	11	B.1.595.4	0.080292
N	182	A182T	Gcc	Acc	11	11	B.1.623	0.005901
N	182	A182S	Gcc	Tcc	10	10	AY.34	0.00097
N	182	A182S	Gcc	Tcc	10	10	AY.46	0.001041
N	182	A182S	Gcc	Tcc	10	10	B.1.1.274	0.050505
N	182	A182del	GCC	---	10	10	B.1.1.7	0.000009
N	182	A182F	GCc	TTc	10	10	B.1.177.8	0.007524
N	182	A182S	Gcc	Tcc	10	10	B.1.36	0.001459
N	182	A182V	gCc	gTc	10	10	B.1.617.2	0.000038
N	182	A182T	Gcc	Acc	10	10	B.1.617.2	0.000038
N	182	A182S	Gcc	Tcc	10	10	B.1.619.1	0.006414
N	182	A182S	Gcc	Tcc	9	9	AY.100	0.000414
N	182	A182A	gcC	gcT	9	9	AY.118	0.000564
N	182	A182S	Gcc	Tcc	9	9	AY.20	0.00035
N	182	A182T	Gcc	Acc	9	9	B.1.243	0.000626
N	182	A182V	gCc	gTc	9	9	B.1.258.17	0.000936
N	182	A182S	Gcc	Tcc	9	9	B.1.36.29	0.004656
N	182	A182S	Gcc	Tcc	8	8	AY.120	0.000297
N	182	A182A	gcC	gcT	8	8	AY.34.1	0.00408
N	182	A182S	Gcc	Tcc	8	8	B.1.1.222	0.001632
N	182	A182S	Gcc	Tcc	8	8	B.1.596	0.000697
N	182	A182S	Gcc	Tcc	8	8	P.1.14	0.000382
N	182	A182del1	gCc	g-c	3	7	All	0.000001
N	182	A182del1	gcC	gc-	3	7	All	0.000001
N	182	A182del1	GCc	A-c	1	7	All	0
N	182	A182A	gcC	gcT	7	7	AY.119	0.000247
N	182	A182S	Gcc	Tcc	7	7	AY.36	0.001037
N	182	A182S	Gcc	Tcc	7	7	AY.41	0.002058
N	182	A182S	Gcc	Tcc	7	7	AY.47	0.000218
N	182	A182S	Gcc	Tcc	7	7	AY.75.1	0.001262
N	182	A182S	Gcc	Tcc	7	7	AY.9.1	0.000586
N	182	A182A	gcC	gcT	7	7	B.1.1.267	0.070707
N	182	A182S	Gcc	Tcc	7	7	B.1.1.427	1
N	182	A182A	gcC	gcT	7	7	B.1.177.4	0.001477
N	182	A182S	Gcc	Tcc	7	7	B.1.617.1	0.000903
N	182	A182S	Gcc	Tcc	6	6	AY.118	0.000376
N	182	A182A	gcC	gcA	6	6	AY.120.1	0.001926
N	182	A182D	gCc	gAc	6	6	AY.4	0.000009
N	182	A182S	Gcc	Tcc	6	6	AY.4.2.1	0.000894
N	182	A182V	gCc	gTc	6	6	AY.43	0.000027
N	182	A182T	Gcc	Acc	6	6	B.1.1.519	0.000238
N	182	A182S	Gcc	Tcc	6	6	B.1.214.3	0.042857
N	182	A182S	Gcc	Tcc	6	6	B.1.369	0.001711
N	182	A182S	Gcc	Tcc	6	6	B.1.471	0.016393
N	182	A182Y	GCc	TAc	5	5	All	0.000001
N	182	A182S	Gcc	Tcc	5	5	AY.114	0.001156
N	182	A182S	Gcc	Tcc	5	5	AY.117	0.000423
N	182	A182S	Gcc	Tcc	5	5	AY.120.1	0.001605
N	182	A182A	gcC	gcT	5	5	AY.13	0.000805
N	182	A182V	gCc	gTc	5	5	AY.20	0.000194
N	182	A182T	Gcc	Acc	5	5	AY.25	0.00003
N	182	A182S	Gcc	Tcc	5	5	AY.4.2	0.000108
N	182	A182V	gCc	gTc	5	5	AY.44	0.00003
N	182	A182S	Gcc	Tcc	5	5	AY.84	0.002187
N	182	A182S	Gcc	Tcc	5	5	AY.88	0.004421
N	182	A182P	Gcc	Ccc	5	5	AY.9	0.000338
N	182	A182A	gcC	gcT	5	5	AY.9	0.000338
N	182	A182A	gcC	gcT	5	5	AY.97	0.008503
N	182	A182S	Gcc	Tcc	5	5	B.1.1.326	0.008803
N	182	A182P	Gcc	Ccc	4	5	B.1.1.7	0.000004
N	182	A182P	GcC	CcT	1	5	B.1.1.7	0.000001
N	182	A182A	gcC	gcT	5	5	B.1.177.75	0.005203
N	182	A182P	Gcc	Ccc	5	5	B.1.351	0.000149
N	182	A182A	gcC	gcT	5	5	B.1.36.10	0.023923
N	182	A182V	gCc	gTc	5	5	B.1.577	0.003436
N	182	A182A	gcC	gcT	4	5	P.1	0.000063
N	182	A182A	gcC	gcA	1	5	P.1	0.000016
N	182	A182S	Gcc	Tcc	5	5	P.2	0.000933
N	182	A182A	gcC	gcT	2	4		0.111111
N	182	A182A	gcC	gcA	1	4		0.055556
N	182	A182A	gcC	gcG	1	4		0.055556
N	182	A182S	Gcc	Tcc	4	4	A.2.5	0.001996
N	182	A182S	Gcc	Tcc	4	4	AD.2	0.000876
N	182	A182S	Gcc	Tcc	4	4	AY.10	0.00212
N	182	A182D	gCc	gAc	4	4	AY.103	0.000025
N	182	A182T	Gcc	Acc	4	4	AY.120	0.000149
N	182	A182S	Gcc	Tcc	4	4	AY.13	0.000644
N	182	A182S	Gcc	Tcc	4	4	AY.2	0.001425
N	182	A182A	gcC	gcA	3	4	AY.20	0.000117
N	182	A182A	gcC	gcT	1	4	AY.20	0.000039
N	182	A182A	gcC	gcT	4	4	AY.23	0.000279
N	182	A182V	gCc	gTc	4	4	AY.26	0.000113
N	182	A182A	gcC	gcT	4	4	AY.29	0.000063
N	182	A182S	Gcc	Tcc	4	4	AY.29.1	0.000882
N	182	A182A	gcC	gcT	4	4	AY.3	0.00004
N	182	A182S	Gcc	Tcc	4	4	AY.39.1	0.000158
N	182	A182T	Gcc	Acc	4	4	AY.39.1	0.000158
N	182	A182T	Gcc	Acc	4	4	AY.4.2	0.000087
N	182	A182A	gcC	gcT	3	4	AY.4.2	0.000065
N	182	A182A	gcC	gcA	1	4	AY.4.2	0.000022
N	182	A182S	Gcc	Tcc	4	4	AY.46.6	0.000289
N	182	A182S	Gcc	Tcc	4	4	AY.5	0.000083
N	182	A182V	gCc	gTc	4	4	AY.53	0.00115
N	182	A182S	Gcc	Tcc	4	4	AY.8	0.002424
N	182	A182S	Gcc	Tcc	4	4	AY.99.2	0.000369
N	182	A182S	Gcc	Tcc	4	4	B	0.000511
N	182	A182S	Gcc	Tcc	4	4	B.1.1.291	0.00297
N	182	A182S	Gcc	Tcc	4	4	B.1.234	0.000528
N	182	A182S	Gcc	Tcc	4	4	B.1.398	0.011905
N	182	A182S	Gcc	Tcc	4	4	B.1.400	0.001716
N	182	A182S	Gcc	Tcc	4	4	B.1.438.4	0.085106
N	182	A182A	gcC	gcA	2	4	B.1.596	0.000174
N	182	A182A	gcC	gcT	2	4	B.1.596	0.000174
N	182	A182S	Gcc	Tcc	4	4	B.1.626	0.022857
N	182	A182S	Gcc	Tcc	4	4	N.9	0.02381
N	182	A182T	Gcc	Acc	4	4	P.1	0.000063
N	182	A182S	Gcc	Tcc	3	3	AY.111	0.000549
N	182	A182S	Gcc	Tcc	3	3	AY.113	0.000427
N	182	A182A	gcC	gcA	2	3	AY.114	0.000462
N	182	A182A	gcC	gcT	1	3	AY.114	0.000231
N	182	A182V	gCc	gTc	3	3	AY.116	0.00086
N	182	A182S	Gcc	Tcc	3	3	AY.116	0.00086
N	182	A182S	Gcc	Tcc	3	3	AY.121	0.000406
N	182	A182S	Gcc	Tcc	3	3	AY.14	0.000264
N	182	A182T	Gcc	Acc	3	3	AY.23	0.000209
N	182	A182T	Gcc	Acc	3	3	AY.26	0.000085
N	182	A182A	gcC	gcT	3	3	AY.26	0.000085
N	182	A182V	gCc	gTc	3	3	AY.3	0.00003
N	182	A182T	Gcc	Acc	3	3	AY.3	0.00003
N	182	A182V	gCc	gTc	3	3	AY.39	0.000074
N	182	A182V	gCc	gTc	3	3	AY.47	0.000093
N	182	A182V	gCc	gTc	3	3	AY.54	0.000286
N	182	A182S	Gcc	Tcc	3	3	AY.54	0.000286
N	182	A182S	Gcc	Tcc	3	3	AY.7.1	0.000338
N	182	A182P	Gcc	Ccc	3	3	AY.8	0.001818
N	182	A182D	gCc	gAc	3	3	B.1	0.000027
N	182	A182V	gCc	gTc	3	3	B.1.1	0.000054
N	182	A182P	Gcc	Ccc	3	3	B.1.1	0.000054
N	182	A182S	Gcc	Tcc	3	3	B.1.1.216	0.002671
N	182	A182S	Gcc	Tcc	3	3	B.1.1.277	0.002276
N	182	A182A	gcC	gcT	3	3	B.1.1.317	0.001235
N	182	A182Y	GCc	TAc	3	3	B.1.1.7	0.000003
N	182	A182S	Gcc	Tcc	3	3	B.1.177.21	0.000229
N	182	A182A	gcC	gcA	3	3	B.1.177.54	0.001819
N	182	A182A	gcC	gcT	3	3	B.1.221	0.000213
N	182	A182A	gcC	gcT	2	3	B.1.232	0.001075
N	182	A182A	gcC	gcA	1	3	B.1.232	0.000537
N	182	A182T	Gcc	Acc	3	3	B.1.258	0.0002
N	182	A182S	Gcc	Tcc	3	3	B.1.36.18	0.001261
N	182	A182S	Gcc	Tcc	3	3	B.1.36.38	0.004926
N	182	A182S	Gcc	Tcc	3	3	B.1.36.8	0.003
N	182	A182A	gcC	gcA	3	3	B.1.427	0.000151
N	182	A182S	Gcc	Tcc	3	3	B.1.567	0.01
N	182	A182A	gcC	gcT	3	3	B.1.577	0.002062
N	182	A182S	Gcc	Tcc	3	3	B.1.609	0.001438
N	182	A182S	Gcc	Tcc	3	3	B.1.620	0.002838
N	182	A182S	Gcc	Tcc	3	3	C.16	0.003181
N	182	A182S	Gcc	Tcc	3	3	C.32	0.069767
N	182	A182S	Gcc	Tcc	3	3	C.37	0.000348
N	182	A182G	gCc	gGc	2	2	All	0
N	182	A182N	GCc	AAc	2	2	All	0
N	182	A182S	Gcc	Tcc	2	2	AY.1	0.000791
N	182	A182A	gcC	gcT	2	2	AY.100	0.000092
N	182	A182T	Gcc	Acc	2	2	AY.100	0.000092
N	182	A182A	gcC	gcT	2	2	AY.102	0.000053
N	182	A182S	Gcc	Tcc	2	2	AY.105	0.001286
N	182	A182S	Gcc	Tcc	2	2	AY.106	0.00067
N	182	A182T	Gcc	Acc	2	2	AY.117	0.000169
N	182	A182S	Gcc	Tcc	2	2	AY.16	0.000759
N	182	A182T	Gcc	Acc	2	2	AY.20	0.000078
N	182	A182S	Gcc	Tcc	2	2	AY.22	0.004184
N	182	A182V	gCc	gTc	2	2	AY.25	0.000012
N	182	A182S	Gcc	Tcc	2	2	AY.32	0.001065
N	182	A182A	gcC	gcT	2	2	AY.33	0.000134
N	182	A182V	gCc	gTc	2	2	AY.36	0.000296
N	182	A182S	Gcc	Tcc	2	2	AY.38	0.000999
N	182	A182A	gcC	gcT	2	2	AY.4.3	0.001684
N	182	A182T	Gcc	Acc	2	2	AY.4.5	0.000215
N	182	A182del	GCC	---	2	2	AY.40	0.001929
N	182	A182del	GCC	---	2	2	AY.43	0.000009
N	182	A182T	Gcc	Acc	2	2	AY.44	0.000012
N	182	A182V	gCc	gTc	2	2	AY.46.1	0.002053
N	182	A182V	gCc	gTc	2	2	AY.5	0.000041
N	182	A182S	Gcc	Tcc	2	2	AY.5.4	0.000553
N	182	A182del	GCC	---	2	2	AY.50	0.001599
N	182	A182S	Gcc	Tcc	2	2	AY.53	0.000575
N	182	A182S	Gcc	Tcc	2	2	AY.71	0.00095
N	182	A182del	GCC	---	2	2	AY.75	0.000112
N	182	A182S	Gcc	Tcc	2	2	AY.92	0.000575
N	182	A182S	Gcc	Tcc	2	2	AY.98	0.000158
N	182	A182P	Gcc	Ccc	2	2	B.1	0.000018
N	182	A182V	gCc	gTc	2	2	B.1	0.000018
N	182	A182del	GCC	---	2	2	B.1.1	0.000036
N	182	A182A	gcC	gcT	1	2	B.1.1	0.000018
N	182	A182A	gcC	gcA	1	2	B.1.1	0.000018
N	182	A182S	Gcc	Tcc	2	2	B.1.1.1	0.000653
N	182	A182S	Gcc	Tcc	2	2	B.1.1.148	0.017544
N	182	A182A	gcC	gcT	2	2	B.1.1.161	0.007067
N	182	A182S	Gcc	Tcc	2	2	B.1.1.174	0.006757
N	182	A182S	Gcc	Tcc	2	2	B.1.1.192	0.004619
N	182	A182S	Gcc	Tcc	2	2	B.1.1.200	0.014925
N	182	A182A	gcC	gcT	2	2	B.1.1.222	0.000408
N	182	A182del	GCC	---	2	2	B.1.1.28	0.000622
N	182	A182S	Gcc	Tcc	2	2	B.1.1.28	0.000622
N	182	A182A	gcC	gcT	2	2	B.1.1.297	0.004474
N	182	A182S	Gcc	Tcc	2	2	B.1.1.306	0.000877
N	182	A182V	gCc	gTc	2	2	B.1.1.333	0.002153
N	182	A182S	Gcc	Tcc	2	2	B.1.1.351	0.005587
N	182	A182S	Gcc	Tcc	2	2	B.1.1.377	0.002762
N	182	A182S	Gcc	Tcc	2	2	B.1.1.413	0.013793
N	182	A182S	Gcc	Tcc	2	2	B.1.1.434	0.000697
N	182	A182S	Gcc	Tcc	2	2	B.1.1.461	0.024096
N	182	A182P	Gcc	Ccc	2	2	B.1.1.519	0.000079
N	182	A182S	Gcc	Tcc	2	2	B.1.1.528	0.009615
N	182	A182S	Gcc	Tcc	2	2	B.1.126	0.002551
N	182	A182S	Gcc	Tcc	2	2	B.1.157	0.00597
N	182	A182del	GCC	---	2	2	B.1.177	0.000026
N	182	A182P	Gcc	Ccc	2	2	B.1.177	0.000026
N	182	A182S	Gcc	Tcc	2	2	B.1.177.15	0.001262
N	182	A182V	gCc	gTc	2	2	B.1.177.16	0.001329
N	182	A182S	Gcc	Tcc	2	2	B.1.177.4	0.000422
N	182	A182A	gcC	gcT	2	2	B.1.177.60	0.000437
N	182	A182S	Gcc	Tcc	2	2	B.1.177.7	0.00033
N	182	A182S	Gcc	Tcc	2	2	B.1.177.81	0.000379
N	182	A182D	gCc	gAc	2	2	B.1.2	0.000018
N	182	A182V	gCc	gTc	2	2	B.1.2	0.000018
N	182	A182del1	gCc	g-c	1	2	B.1.2	0.000009
N	182	A182del1	gcC	gc-	1	2	B.1.2	0.000009
N	182	A182V	gCc	gTc	2	2	B.1.208	0.08
N	182	A182S	Gcc	Tcc	2	2	B.1.232	0.001075
N	182	A182A	gcC	gcA	2	2	B.1.243	0.000139
N	182	A182S	Gcc	Tcc	2	2	B.1.305	0.004301
N	182	A182S	Gcc	Tcc	2	2	B.1.346	0.002621
N	182	A182T	Gcc	Acc	2	2	B.1.351	0.000059
N	182	A182S	Gcc	Tcc	2	2	B.1.351.2	0.000605
N	182	A182S	Gcc	Tcc	2	2	B.1.396	0.001411
N	182	A182S	Gcc	Tcc	2	2	B.1.416	0.002538
N	182	A182T	Gcc	Acc	2	2	B.1.427	0.000101
N	182	A182T	Gcc	Acc	2	2	B.1.429	0.000047
N	182	A182A	gcC	gcA	1	2	B.1.429	0.000024
N	182	A182A	gcC	gcT	1	2	B.1.429	0.000024
N	182	A182S	Gcc	Tcc	2	2	B.1.470	0.002809
N	182	A182V	gCc	gTc	2	2	B.1.509	0.001732
N	182	A182S	Gcc	Tcc	2	2	B.1.595	0.000522
N	182	A182S	Gcc	Tcc	2	2	B.1.612	0.005305
N	182	A182P	Gcc	Ccc	2	2	B.1.617.2	0.000008
N	182	A182D	gCc	gAc	2	2	B.1.617.2	0.000008
N	182	A182S	Gcc	Tcc	2	2	B.1.621	0.000177
N	182	A182V	gCc	gTc	2	2	B.1.621	0.000177
N	182	A182T	Gcc	Acc	2	2	B.1.621.1	0.001012
N	182	A182S	Gcc	Tcc	2	2	B.1.623	0.001073
N	182	A182S	Gcc	Tcc	2	2	B.1.637	0.000146
N	182	A182A	gcC	gcT	2	2	B.1.637	0.000146
N	182	A182S	Gcc	Tcc	2	2	C.36	0.001821
N	182	A182del	GCC	---	2	2	C.37.1	0.005236
N	182	A182S	Gcc	Tcc	2	2	C.39	0.037736
N	182	A182V	gCc	gTc	2	2	P.1	0.000032
N	182	A182A	gcC	gcT	1	2	P.1.7	0.000319
N	182	A182A	gcC	gcA	1	2	P.1.7	0.000319
N	182	A182S	Gcc	Tcc	2	2	P.3	0.00319
N	182	A182S	Gcc	Tcc	2	2	Q.8	0.00033
N	182	A182A	gcC	gcT	2	2	R.1	0.00018
N	182	A182D	gCc	gAc	1	1		0.055556
N	182	A182E	gCC	gAA	1	1		0.055556
N	182	A182S	Gcc	Tcc	1	1	A.2.3	0.004739
N	182	A182V	gCc	gTc	1	1	A.25	0.018182
N	182	A182E	gCC	gAA	1	1	All	0
N	182	A182H	GCc	CAc	1	1	All	0
N	182	A182L	GCc	CTc	1	1	All	0
N	182	A182T	Gcc	Acc	1	1	AY.102	0.000027
N	182	A182T	Gcc	Acc	1	1	AY.103	0.000006
N	182	A182A	gcC	gcA	1	1	AY.106	0.000335
N	182	A182S	Gcc	Tcc	1	1	AY.107	0.000466
N	182	A182A	gcC	gcA	1	1	AY.113	0.000142
N	182	A182D	gCc	gAc	1	1	AY.116	0.000287
N	182	A182T	Gcc	Acc	1	1	AY.116.1	0.000311
N	182	A182D	gCc	gAc	1	1	AY.118	0.000063
N	182	A182P	Gcc	Ccc	1	1	AY.120	0.000037
N	182	A182A	gcC	gcA	1	1	AY.121	0.000135
N	182	A182A	gcC	gcT	1	1	AY.16	0.00038
N	182	A182S	Gcc	Tcc	1	1	AY.16.1	0.00047
N	182	A182S	Gcc	Tcc	1	1	AY.17	0.008197
N	182	A182P	Gcc	Ccc	1	1	AY.17	0.008197
N	182	A182A	gcC	gcA	1	1	AY.2	0.000356
N	182	A182D	gCc	gAc	1	1	AY.20	0.000039
N	182	A182S	Gcc	Tcc	1	1	AY.23.1	0.000417
N	182	A182T	Gcc	Acc	1	1	AY.24	0.000431
N	182	A182del	GCC	---	1	1	AY.25	0.000006
N	182	A182S	Gcc	Tcc	1	1	AY.27	0.000065
N	182	A182A	gcC	gcA	1	1	AY.27	0.000065
N	182	A182D	gCc	gAc	1	1	AY.3	0.00001
N	182	A182del	GCC	---	1	1	AY.3	0.00001
N	182	A182T	Gcc	Acc	1	1	AY.33	0.000067
N	182	A182S	Gcc	Tcc	1	1	AY.34.1	0.00051
N	182	A182A	gcC	gcT	1	1	AY.36	0.000148
N	182	A182T	Gcc	Acc	1	1	AY.39	0.000025
N	182	A182A	gcC	gcA	1	1	AY.39	0.000025
N	182	A182del1	gcC	gc-	1	1	AY.39.1	0.00004
N	182	A182A	gcC	gcA	1	1	AY.39.1	0.00004
N	182	A182F	GCc	TTc	1	1	AY.4	0.000002
N	182	A182N	GCc	AAc	1	1	AY.4	0.000002
N	182	A182V	gCc	gTc	1	1	AY.4.2	0.000022
N	182	A182V	gCc	gTc	1	1	AY.4.3	0.000842
N	182	A182A	gcC	gcA	1	1	AY.4.5	0.000107
N	182	A182D	gCc	gAc	1	1	AY.42	0.00004
N	182	A182V	gCc	gTc	1	1	AY.42	0.00004
N	182	A182D	gCc	gAc	1	1	AY.43	0.000004
N	182	A182del1	gCc	g-c	1	1	AY.43	0.000004
N	182	A182Y	GCc	TAc	1	1	AY.43	0.000004
N	182	A182D	gCc	gAc	1	1	AY.44	0.000006
N	182	A182V	gCc	gTc	1	1	AY.45	0.000122
N	182	A182del	GCC	---	1	1	AY.46	0.000104
N	182	A182A	gcC	gcA	1	1	AY.46	0.000104
N	182	A182T	Gcc	Acc	1	1	AY.46.2	0.000635
N	182	A182A	gcC	gcA	1	1	AY.46.2	0.000635
N	182	A182S	Gcc	Tcc	1	1	AY.46.4	0.000165
N	182	A182del1	gcC	gc-	1	1	AY.47	0.000031
N	182	A182del	GCC	---	1	1	AY.5	0.000021
N	182	A182A	gcC	gcA	1	1	AY.5.4	0.000277
N	182	A182S	Gcc	Tcc	1	1	AY.50	0.000799
N	182	A182S	Gcc	Tcc	1	1	AY.51	0.000909
N	182	A182S	Gcc	Tcc	1	1	AY.55	0.000917
N	182	A182S	Gcc	Tcc	1	1	AY.58	0.000907
N	182	A182P	Gcc	Ccc	1	1	AY.58	0.000907
N	182	A182T	Gcc	Acc	1	1	AY.6	0.000041
N	182	A182S	Gcc	Tcc	1	1	AY.60	0.000938
N	182	A182A	gcC	gcT	1	1	AY.61	0.000105
N	182	A182S	Gcc	Tcc	1	1	AY.68	0.000274
N	182	A182S	Gcc	Tcc	1	1	AY.69	0.000187
N	182	A182V	gCc	gTc	1	1	AY.7.1	0.000113
N	182	A182S	Gcc	Tcc	1	1	AY.73	0.000665
N	182	A182V	gCc	gTc	1	1	AY.74	0.000116
N	182	A182T	Gcc	Acc	1	1	AY.75	0.000056
N	182	A182T	Gcc	Acc	1	1	AY.84	0.000437
N	182	A182A	gcC	gcA	1	1	AY.84	0.000437
N	182	A182S	Gcc	Tcc	1	1	AY.85	0.000427
N	182	A182S	Gcc	Tcc	1	1	AY.87	0.000833
N	182	A182P	Gcc	Ccc	1	1	AY.87	0.000833
N	182	A182T	Gcc	Acc	1	1	AY.9.2	0.000037
N	182	A182del	GCC	---	1	1	AY.9.2	0.000037
N	182	A182del	GCC	---	1	1	AY.95	0.000761
N	182	A182A	gcC	gcT	1	1	AY.98	0.000079
N	182	A182P	Gcc	Ccc	1	1	AY.98	0.000079
N	182	A182A	gcC	gcT	1	1	AY.98.1	0.000048
N	182	A182S	Gcc	Tcc	1	1	AY.99	0.001049
N	182	A182A	gcC	gcT	1	1	B	0.000128
N	182	A182L	GCc	CTc	1	1	B	0.000128
N	182	A182H	GCc	CAc	1	1	B.1	0.000009
N	182	A182N	GCc	AAc	1	1	B.1	0.000009
N	182	A182Y	GCc	TAc	1	1	B.1	0.000009
N	182	A182T	Gcc	Acc	1	1	B.1.1	0.000018
N	182	A182S	Gcc	Tcc	1	1	B.1.1.130	0.015385
N	182	A182T	Gcc	Acc	1	1	B.1.1.157	0.000913
N	182	A182T	Gcc	Acc	1	1	B.1.1.159	0.004673
N	182	A182S	Gcc	Tcc	1	1	B.1.1.189	0.001513
N	182	A182V	gCc	gTc	1	1	B.1.1.214	0.000055
N	182	A182S	Gcc	Tcc	1	1	B.1.1.217	0.003636
N	182	A182S	Gcc	Tcc	1	1	B.1.1.25	0.000569
N	182	A182A	gcC	gcT	1	1	B.1.1.277	0.000759
N	182	A182D	gCc	gAc	1	1	B.1.1.28	0.000311
N	182	A182S	Gcc	Tcc	1	1	B.1.1.284	0.000107
N	182	A182S	Gcc	Tcc	1	1	B.1.1.285	0.006536
N	182	A182A	gcC	gcT	1	1	B.1.1.301	0.001179
N	182	A182V	gCc	gTc	1	1	B.1.1.306	0.000438
N	182	A182A	gcC	gcA	1	1	B.1.1.306	0.000438
N	182	A182S	Gcc	Tcc	1	1	B.1.1.312	0.001912
N	182	A182S	Gcc	Tcc	1	1	B.1.1.316	0.000925
N	182	A182T	Gcc	Acc	1	1	B.1.1.317	0.000412
N	182	A182V	gCc	gTc	1	1	B.1.1.318	0.000302
N	182	A182A	gcC	gcA	1	1	B.1.1.326	0.001761
N	182	A182del	GCC	---	1	1	B.1.1.33	0.000421
N	182	A182S	Gcc	Tcc	1	1	B.1.1.348	0.000796
N	182	A182T	Gcc	Acc	1	1	B.1.1.406	0.006494
N	182	A182S	Gcc	Tcc	1	1	B.1.1.418	0.022727
N	182	A182S	Gcc	Tcc	1	1	B.1.1.420	0.001006
N	182	A182A	gcC	gcA	1	1	B.1.1.434	0.000349
N	182	A182S	Gcc	Tcc	1	1	B.1.1.436	0.025641
N	182	A182T	Gcc	Acc	1	1	B.1.1.51	0.001718
N	182	A182A	gcC	gcT	1	1	B.1.1.519	0.00004
N	182	A182S	Gcc	Tcc	1	1	B.1.1.52	0.012195
N	182	A182S	Gcc	Tcc	1	1	B.1.1.61	0.008772
N	182	A182del1	gCc	g-c	1	1	B.1.1.7	0.000001
N	182	A182A	gcC	gcA	1	1	B.1.1.70	0.000341
N	182	A182S	Gcc	Tcc	1	1	B.1.111	0.001175
N	182	A182S	Gcc	Tcc	1	1	B.1.128	0.000635
N	182	A182S	Gcc	Tcc	1	1	B.1.139	0.000733
N	182	A182P	Gcc	Ccc	1	1	B.1.149	0.003425
N	182	A182S	Gcc	Tcc	1	1	B.1.160.11	0.005714
N	182	A182A	gcC	gcT	1	1	B.1.160.16	0.000929
N	182	A182T	Gcc	Acc	1	1	B.1.177	0.000013
N	182	A182A	gcC	gcT	1	1	B.1.177	0.000013
N	182	A182S	Gcc	Tcc	1	1	B.1.177.11	0.001698
N	182	A182T	Gcc	Acc	1	1	B.1.177.21	0.000076
N	182	A182T	Gcc	Acc	1	1	B.1.177.57	0.000281
N	182	A182G	gCc	gGc	1	1	B.1.177.63	0.002703
N	182	A182del	GCC	---	1	1	B.1.177.68	0.015152
N	182	A182S	Gcc	Tcc	1	1	B.1.177.83	0.001481
N	182	A182A	gcC	gcT	1	1	B.1.177.86	0.000183
N	182	A182S	Gcc	Tcc	1	1	B.1.177.86	0.000183
N	182	A182S	Gcc	Tcc	1	1	B.1.179	0.003759
N	182	A182S	Gcc	Tcc	1	1	B.1.199	0.004132
N	182	A182del	GCC	---	1	1	B.1.2	0.000009
N	182	A182S	Gcc	Tcc	1	1	B.1.214	0.003663
N	182	A182D	gCc	gAc	1	1	B.1.221	0.000071
N	182	A182S	Gcc	Tcc	1	1	B.1.239	0.001221
N	182	A182P	Gcc	Ccc	1	1	B.1.247	0.014925
N	182	A182A	gcC	gcT	1	1	B.1.260	0.003344
N	182	A182V	gCc	gTc	1	1	B.1.265	0.001271
N	182	A182V	gCc	gTc	1	1	B.1.279	0.000514
N	182	A182S	Gcc	Tcc	1	1	B.1.289	0.00266
N	182	A182T	Gcc	Acc	1	1	B.1.311	0.000275
N	182	A182A	gcC	gcT	1	1	B.1.311	0.000275
N	182	A182A	gcC	gcT	1	1	B.1.324	0.001605
N	182	A182del	GCC	---	1	1	B.1.351	0.00003
N	182	A182S	Gcc	Tcc	1	1	B.1.356	0.001727
N	182	A182S	Gcc	Tcc	1	1	B.1.36.1	0.00114
N	182	A182S	Gcc	Tcc	1	1	B.1.36.16	0.001425
N	182	A182S	Gcc	Tcc	1	1	B.1.367	0.000792
N	182	A182A	gcC	gcA	1	1	B.1.369	0.000285
N	182	A182D	gCc	gAc	1	1	B.1.375	0.00082
N	182	A182S	Gcc	Tcc	1	1	B.1.378	0.006849
N	182	A182T	Gcc	Acc	1	1	B.1.389	0.001002
N	182	A182T	Gcc	Acc	1	1	B.1.399	0.001934
N	182	A182del	GCC	---	1	1	B.1.416.1	0.001563
N	182	A182S	Gcc	Tcc	1	1	B.1.425	0.002994
N	182	A182T	Gcc	Acc	1	1	B.1.426	0.001009
N	182	A182del	GCC	---	1	1	B.1.427	0.00005
N	182	A182S	Gcc	Tcc	1	1	B.1.451	0.008197
N	182	A182del	GCC	---	1	1	B.1.465	0.003802
N	182	A182V	gCc	gTc	1	1	B.1.466.2	0.000391
N	182	A182V	gCc	gTc	1	1	B.1.507	0.011236
N	182	A182A	gcC	gcT	1	1	B.1.509	0.000866
N	182	A182S	Gcc	Tcc	1	1	B.1.524	0.001406
N	182	A182T	Gcc	Acc	1	1	B.1.525	0.000113
N	182	A182A	gcC	gcA	1	1	B.1.525	0.000113
N	182	A182del	GCC	---	1	1	B.1.525	0.000113
N	182	A182S	Gcc	Tcc	1	1	B.1.525	0.000113
N	182	A182A	gcC	gcT	1	1	B.1.533	0.009615
N	182	A182S	Gcc	Tcc	1	1	B.1.560	0.00463
N	182	A182del	GCC	---	1	1	B.1.560	0.00463
N	182	A182D	gCc	gAc	1	1	B.1.561	0.000397
N	182	A182S	Gcc	Tcc	1	1	B.1.561	0.000397
N	182	A182S	Gcc	Tcc	1	1	B.1.564	0.000426
N	182	A182S	Gcc	Tcc	1	1	B.1.575.2	0.004808
N	182	A182del	GCC	---	1	1	B.1.576	0.000907
N	182	A182T	Gcc	Acc	1	1	B.1.577	0.000687
N	182	A182del	GCC	---	1	1	B.1.596	0.000087
N	182	A182T	Gcc	Acc	1	1	B.1.599	0.00365
N	182	A182S	Gcc	Tcc	1	1	B.1.599	0.00365
N	182	A182F	GCc	TTc	1	1	B.1.612	0.002653
N	182	A182V	gCc	gTc	1	1	B.1.612	0.002653
N	182	A182del	GCC	---	1	1	B.1.617.1	0.000129
N	182	A182G	gCc	gGc	1	1	B.1.617.1	0.000129
N	182	A182A	gcC	gcA	1	1	B.1.617.1	0.000129
N	182	A182del	GCC	---	1	1	B.1.617.2	0.000004
N	182	A182del1	GCc	A-c	1	1	B.1.617.2	0.000004
N	182	A182A	gcC	gcT	1	1	B.1.621	0.000089
N	182	A182A	gcC	gcT	1	1	B.1.623	0.000536
N	182	A182A	gcC	gcA	1	1	B.1.625	0.002353
N	182	A182S	Gcc	Tcc	1	1	B.1.628	0.000352
N	182	A182A	gcC	gcT	1	1	B.1.628	0.000352
N	182	A182S	Gcc	Tcc	1	1	B.1.631	0.003367
N	182	A182V	gCc	gTc	1	1	B.1.93	0.000934
N	182	A182A	gcC	gcA	1	1	B.12	0.00641
N	182	A182S	Gcc	Tcc	1	1	B.3	0.000831
N	182	A182S	Gcc	Tcc	1	1	B.40	0.000364
N	182	A182A	gcC	gcT	1	1	B.61	0.005747
N	182	A182S	Gcc	Tcc	1	1	C.18	0.002591
N	182	A182S	Gcc	Tcc	1	1	C.23	0.005814
N	182	A182V	gCc	gTc	1	1	C.30	0.001727
N	182	A182S	Gcc	Tcc	1	1	C.35	0.000774
N	182	A182T	GcC	AcT	1	1	C.35	0.000774
N	182	A182S	Gcc	Tcc	1	1	C.36.3	0.000567
N	182	A182S	Gcc	Tcc	1	1	G.1	0.041667
N	182	A182S	Gcc	Tcc	1	1	N.5	0.001767
N	182	A182D	gCc	gAc	1	1	P.1	0.000016
N	182	A182del	GCC	---	1	1	P.1	0.000016
N	182	A182S	Gcc	Tcc	1	1	P.1.12	0.000484
N	182	A182A	gcC	gcT	1	1	P.1.14	0.000048
N	182	A182del	GCC	---	1	1	P.1.15	0.000232
N	182	A182S	Gcc	Tcc	1	1	P.1.16	0.000374
N	182	A182S	Gcc	Tcc	1	1	P.1.2	0.001156
N	182	A182S	Gcc	Tcc	1	1	P.6	0.003145
N	182	A182S	Gcc	Tcc	1	1	P.7	0.004367
N	182	A182S	Gcc	Tcc	1	1	Q.1	0.000126
N	182	A182D	gCc	gAc	1	1	Q.3	0.000145
N	182	A182A	gcC	gcA	1	1	Q.8	0.000165
N	182	A182T	Gcc	Acc	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.