CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 180

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N180S180InonsynaGtaTt163516340.99938828811-28813
N180S180InonsynaGTaTC163510.00061162128811-28813
N180S180SsynagTagC612612128811-28813
N180S180TnonsynaGtaCt407407128811-28813
N180S180NnonsynaGtaAt1661600.96385528811-28813
N180S180NnonsynaGTaAC16660.036144628811-28813
N180S180GnonsynAgtGgt97960.98969128811-28813
N180S180GnonsynAgTGgG9710.010309328811-28813
N180S180deldelAGT---5959128811-28813
N180S180CnonsynAgtTgt4949128811-28813
N180S180RnonsynagTagG48360.7528811-28813
N180S180RnonsynAgtCgt4880.16666728811-28813
N180S180RnonsynagTagA4830.062528811-28813
N180S180RnonsynAgTCgA4810.020833328811-28813
N180S180del2delAGt--t320.66666728811-28813
N180S180del2delAGT--N310.33333328811-28813
N180S180del1delAgt-gt22128811-28813
N180S180DnonsynAGtGAt11128811-28813
N180S180FnonsynAGtTTt11128811-28813
N180S180KnonsynaGTaAG11128811-28813

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N180S180IaGtaTt16341635All0.000313
N180S180IaGTaTC11635All0
N180S180SagTagC612612All0.000117
N180S180TaGtaCt407407All0.000078
N180S180IaGtaTt193193B.1.2580.012844
N180S180NaGtaAt160166All0.000031
N180S180NaGTaAC6166All0.000001
N180S180SagTagC156156B.1.258.170.01622
N180S180IaGtaTt149149AY.40.000232
N180S180IaGtaTt116116A.10.032694
N180S180IaGtaTt115115AY.430.00051
N180S180IaGtaTt108109B.1.1.70.000097
N180S180IaGTaTC1109B.1.1.70.000001
N180S180IaGtaTt108108B.10.000989
N180S180SagTagC107107B.1.1.70.000096
N180S180SagTagC9898B.1.621.10.04957
N180S180GAgtGgt9697All0.000018
N180S180GAgTGgG197All0
N180S180IaGtaTt7979AY.250.000475
N180S180IaGtaTt6868B.1.617.20.000256
N180S180TaGtaCt6565B.1.2930.8125
N180S180TaGtaCt6363AY.40.000098
N180S180delAGT---5959All0.000011
N180S180SagTagC5151AY.200.001982
N180S180CAgtTgt4949All0.000009
N180S180RagTagG3648All0.000007
N180S180RAgtCgt848All0.000002
N180S180RagTagA348All0.000001
N180S180RAgTCgA148All0
N180S180IaGtaTt4646AY.260.001302
N180S180NaGtaAt4141B.1.617.20.000154
N180S180IaGtaTt3838B.1.1.5190.001509
N180S180GAgtGgt3838B.1.1.70.000034
N180S180IaGtaTt3636AY.540.003432
N180S180TaGtaCt3636B.1.2580.002396
N180S180TaGtaCt3535B.1.1.70.000031
N180S180TaGtaCt2929B.1.3560.050086
N180S180SagTagC2828AY.30.000278
N180S180IaGtaTt2424AY.1030.000149
N180S180IaGtaTt2222AY.450.002677
N180S180IaGtaTt2020AY.290.000315
N180S180TaGtaCt2020AY.30.000199
N180S180IaGtaTt2020B.1.3581
N180S180SagTagC1919AY.430.000084
N180S180IaGtaTt1919B.1.1600.000593
N180S180SagTagC1919B.1.617.20.000072
N180S180IaGtaTt1717AY.420.000684
N180S180IaGtaTt1717AY.60.000699
N180S180NaGtaAt1617B.10.000147
N180S180NaGTaAC117B.10.000009
N180S180IaGtaTt1717B.1.10.000308
N180S180NaGtaAt1616AY.40.000025
N180S180IaGtaTt1515AY.1090.011095
N180S180IaGtaTt1515AY.670.006964
N180S180IaGtaTt1515B.1.20.000132
N180S180SagTagC1313AY.40.00002
N180S180GAgtGgt1313B.10.000119
N180S180delAGT---1313B.10.000119
N180S180IaGtaTt1212AY.440.000073
N180S180SagTagC1212AY.440.000073
N180S180IaGtaTt1212B.1.1.1120.705882
N180S180RagTagG1212B.1.617.20.000045
N180S180IaGtaTt1111AY.70.002156
N180S180NaGtaAt1111B.1.1.70.00001
N180S180delAGT---1111B.1.1.70.00001
N180S180IaGtaTt1111B.1.617.10.001419
N180S180IaGtaTt1111P.10.000173
N180S180RagTagG1010AY.75.10.001803
N180S180TaGtaCt1010AY.9.20.000367
N180S180TaGtaCt1010B.10.000092
N180S180TaGtaCt1010B.1.1.2740.050505
N180S180TaGtaCt1010B.1.617.20.000038
N180S180IaGtaTt1010B.30.008306
N180S180SagTagC99AY.250.000054
N180S180IaGtaTt99AY.50.000186
N180S180NaGtaAt99AY.610.000943
N180S180IaGtaTt99AY.610.000943
N180S180IaGtaTt99B.1.1470.006803
N180S180TaGtaCt88AY.250.000048
N180S180TaGtaCt88AY.420.000322
N180S180IaGtaTt88B.1.1.3020.016598
N180S180IaGtaTt88B.1.1770.000105
N180S180IaGtaTt77AC.10.259259
N180S180TaGtaCt77AY.1030.000043
N180S180IaGtaTt77AY.1190.000247
N180S180CAgtTgt77AY.40.000011
N180S180IaGtaTt77B.1.177.860.001284
N180S180SagTagC77B.1.20.000062
N180S180TaGtaCt77B.1.20.000062
N180S180TaGtaCt77B.1.2210.000497
N180S180TaGtaCt77B.1.3490.005004
N180S180IaGtaTt77B.1.3510.000208
N180S180NaGtaAt77B.1.4920.049296
N180S180IaGtaTt77P.1.170.001132
N180S180IaGtaTt66AY.30.00006
N180S180SagTagC66B.10.000055
N180S180NaGtaAt66B.1.10.000109
N180S180IaGtaTt66B.1.2320.003224
N180S180IaGtaTt66B.1.4290.000141
N180S180IaGtaTt66C.370.000696
N180S180IaGtaTt55AY.1000.00023
N180S180GAgtGgt55AY.1020.000133
N180S180SagTagC55AY.1020.000133
N180S180CAgtTgt55AY.250.00003
N180S180NaGtaAt45AY.30.00004
N180S180NaGTaAC15AY.30.00001
N180S180IaGtaTt55AY.710.002375
N180S180GAgtGgt55AY.750.00028
N180S180NaGtaAt55AY.75.10.000902
N180S180RAgtCgt45B.10.000037
N180S180RagTagG15B.10.000009
N180S180SagTagC55B.1.10.000091
N180S180IaGtaTt55B.1.1.3110.001791
N180S180TaGtaCt55B.1.1770.000066
N180S180NaGtaAt55B.1.2580.000333
N180S180IaGtaTt55B.1.5950.001305
N180S180GAgtGgt55B.1.617.20.000019
N180S180IaGtaTt55D.20.000375
N180S180IaGtaTt44AY.1020.000106
N180S180GAgtGgt44AY.1030.000025
N180S180NaGtaAt44AY.1030.000025
N180S180IaGtaTt44AY.16.10.00188
N180S180NaGtaAt44AY.390.000099
N180S180RAgtCgt34AY.40.000005
N180S180RAgTCgA14AY.40.000002
N180S180NaGtaAt44AY.670.001857
N180S180TaGtaCt44AY.99.20.000369
N180S180IaGtaTt44B.1.1.170.066667
N180S180IaGtaTt44B.1.160.100.032258
N180S180SagTagC44B.1.160.140.008475
N180S180IaGtaTt44B.1.466.20.001565
N180S180IaGtaTt44B.1.4740.007605
N180S180IaGtaTt44B.1.5260.000094
N180S180IaGtaTt44B.1.6090.001918
N180S180RagTagG44B.1.6090.001918
N180S180SagTagC44B.1.6370.000292
N180S180SagTagC44P.10.000063
N180S180IaGtaTt33A.30.006289
N180S180del2AGt--t23All0
N180S180del2AGT--N13All0
N180S180IaGtaTt33AY.130.000483
N180S180IaGtaTt33AY.140.000264
N180S180GAgtGgt33AY.250.000018
N180S180NaGtaAt33AY.260.000085
N180S180GAgtGgt33AY.300.001187
N180S180IaGtaTt33AY.360.000445
N180S180IaGtaTt33AY.370.000948
N180S180IaGtaTt33AY.4.2.10.000447
N180S180TaGtaCt33AY.430.000013
N180S180GAgtGgt33AY.440.000018
N180S180TaGtaCt33AY.440.000018
N180S180TaGtaCt33AY.46.50.000595
N180S180IaGtaTt33AY.550.002752
N180S180IaGtaTt33AY.90.000203
N180S180CAgtTgt33B.10.000027
N180S180CAgtTgt33B.1.10.000054
N180S180IaGtaTt33B.1.1.2140.000166
N180S180TaGtaCt33B.1.1.2140.000166
N180S180IaGtaTt33B.1.1.2220.000612
N180S180SagTagC33B.1.1.630.001157
N180S180TaGtaCt33B.1.1600.000094
N180S180NaGtaAt33B.1.1600.000094
N180S180NaGtaAt33B.1.20.000026
N180S180GAgtGgt33B.1.2580.0002
N180S180IaGtaTt33B.1.4130.012766
N180S180CAgtTgt33B.1.4270.000151
N180S180IaGtaTt33B.1.4270.000151
N180S180IaGtaTt33B.1.5900.013636
N180S180TaGtaCt33B.1.617.10.000387
N180S180NaGtaAt33B.1.6210.000266
N180S180SagTagC33B.1.6210.000266
N180S180TaGtaCt33C.370.000348
N180S180SagTagC33C.370.000348
N180S180RagTagG220.111111
N180S180del1Agt-gt22All0
N180S180SagTagC22AY.1030.000012
N180S180IaGtaTt22AY.1170.000169
N180S180SagTagC22AY.230.000139
N180S180TaGtaCt22AY.290.000032
N180S180IaGtaTt22AY.330.000134
N180S180IaGtaTt22AY.350.000466
N180S180IaGtaTt22AY.390.000049
N180S180TaGtaCt22AY.390.000049
N180S180GAgtGgt22AY.40.000003
N180S180IaGtaTt22AY.4.20.000043
N180S180TaGtaCt22AY.4.2.10.000298
N180S180delAGT---22AY.400.001929
N180S180CAgtTgt22AY.430.000009
N180S180delAGT---22AY.430.000009
N180S180SagTagC22AY.46.60.000144
N180S180CAgtTgt22AY.470.000062
N180S180TaGtaCt22AY.470.000062
N180S180delAGT---22AY.500.001599
N180S180IaGtaTt22AY.700.000417
N180S180SagTagC22AY.75.10.000361
N180S180SagTagC22AY.9.10.000167
N180S180NaGTaAC22AY.9.20.000073
N180S180CAgtTgt22AY.98.10.000097
N180S180IaGtaTt22AY.98.10.000097
N180S180IaGtaTt22AY.99.20.000184
N180S180TaGtaCt22B0.000256
N180S180delAGT---22B.1.10.000036
N180S180TaGtaCt22B.1.10.000036
N180S180GAgtGgt22B.1.1.10.000653
N180S180delAGT---22B.1.1.280.000622
N180S180IaGtaTt22B.1.1.3180.000604
N180S180IaGtaTt22B.1.1.390.001019
N180S180NaGtaAt22B.1.1.4090.005666
N180S180IaGtaTt22B.1.1.500.001358
N180S180IaGtaTt22B.1.1.700.000682
N180S180delAGT---22B.1.1770.000026
N180S180GAgtGgt22B.1.1770.000026
N180S180TaGtaCt22B.1.2430.000139
N180S180TaGtaCt22B.1.3360.004878
N180S180CAgtTgt22B.1.3510.000059
N180S180SagTagC22B.1.3510.000059
N180S180IaGtaTt22B.1.438.10.000215
N180S180TaGtaCt22B.1.438.10.000215
N180S180IaGtaTt22B.1.4970.00063
N180S180IaGtaTt22B.1.6210.000177
N180S180IaGtaTt22B.1.6370.000146
N180S180IaGtaTt22B.420.066667
N180S180IaGtaTt22C.160.002121
N180S180IaGtaTt22C.350.001548
N180S180NaGtaAt22C.36.30.001134
N180S180delAGT---22C.37.10.005236
N180S180IaGtaTt22P.1.100.000539
N180S180IaGtaTt22Q.10.000253
N180S180IaGtaTt22R.10.00018
N180S180NaGtaAt110.055556
N180S180KaGTaAG110.055556
N180S180IaGtaTt11A0.000387
N180S180SagTagC11A.10.000282
N180S180TaGtaCt11A.2.40.003367
N180S180IaGtaTt11A.2.50.000499
N180S180IaGtaTt11A.50.001923
N180S180SagTagC11AD.20.000219
N180S180KaGTaAG11All0
N180S180DAGtGAt11All0
N180S180FAGtTTt11All0
N180S180IaGtaTt11AU.20.002421
N180S180IaGtaTt11AW.10.003049
N180S180SagTagC11AY.1000.000046
N180S180TaGtaCt11AY.1000.000046
N180S180delAGT---11AY.1020.000027
N180S180CAgtTgt11AY.1030.000006
N180S180IaGtaTt11AY.1070.000466
N180S180IaGtaTt11AY.1080.001103
N180S180NaGTaAC11AY.1100.000113
N180S180TaGtaCt11AY.1100.000113
N180S180IaGtaTt11AY.1110.000183
N180S180IaGtaTt11AY.116.10.000311
N180S180IaGtaTt11AY.120.000316
N180S180SagTagC11AY.1200.000037
N180S180IaGtaTt11AY.1210.000135
N180S180SagTagC11AY.140.000088
N180S180TaGtaCt11AY.160.00038
N180S180SagTagC11AY.160.00038
N180S180IaGtaTt11AY.160.00038
N180S180IaGtaTt11AY.20.000356
N180S180RagTagA11AY.230.00007
N180S180IaGtaTt11AY.240.000431
N180S180RagTagG11AY.250.000006
N180S180delAGT---11AY.250.000006
N180S180SagTagC11AY.260.000028
N180S180CAgtTgt11AY.260.000028
N180S180SagTagC11AY.270.000065
N180S180GAgtGgt11AY.290.000016
N180S180CAgtTgt11AY.290.000016
N180S180del1Agt-gt11AY.290.000016
N180S180SagTagC11AY.290.000016
N180S180IaGtaTt11AY.29.10.000221
N180S180CAgtTgt11AY.30.00001
N180S180SagTagC11AY.3.10.000085
N180S180IaGtaTt11AY.300.000396
N180S180SagTagC11AY.320.000532
N180S180SagTagC11AY.330.000067
N180S180RagTagG11AY.330.000067
N180S180SagTagC11AY.340.000097
N180S180GAgtGgt11AY.350.000233
N180S180SagTagC11AY.360.000148
N180S180SagTagC11AY.390.000025
N180S180SagTagC11AY.4.20.000022
N180S180IaGtaTt11AY.4.50.000107
N180S180IaGtaTt11AY.400.000964
N180S180NaGtaAt11AY.420.00004
N180S180GAgtGgt11AY.430.000004
N180S180CAgtTgt11AY.440.000006
N180S180NaGtaAt11AY.440.000006
N180S180SagTagC11AY.450.000122
N180S180TaGtaCt11AY.450.000122
N180S180SagTagC11AY.460.000104
N180S180delAGT---11AY.460.000104
N180S180TaGtaCt11AY.460.000104
N180S180IaGtaTt11AY.460.000104
N180S180IaGtaTt11AY.46.40.000165
N180S180IaGtaTt11AY.46.60.000072
N180S180IaGtaTt11AY.470.000031
N180S180TaGtaCt11AY.50.000021
N180S180delAGT---11AY.50.000021
N180S180SagTagC11AY.5.40.000277
N180S180TaGtaCt11AY.520.000814
N180S180IaGtaTt11AY.530.000288
N180S180CAgtTgt11AY.540.000095
N180S180TaGtaCt11AY.550.000917
N180S180SagTagC11AY.550.000917
N180S180NaGtaAt11AY.60.000041
N180S180FAGtTTt11AY.60.000041
N180S180GAgTGgG11AY.620.000436
N180S180TaGtaCt11AY.650.000533
N180S180IaGtaTt11AY.720.001361
N180S180NaGTaAC11AY.750.000056
N180S180delAGT---11AY.750.000056
N180S180TaGtaCt11AY.750.000056
N180S180IaGtaTt11AY.75.10.00018
N180S180IaGtaTt11AY.770.001127
N180S180SagTagC11AY.860.00083
N180S180RagTagA11AY.880.000884
N180S180CAgtTgt11AY.90.000068
N180S180GAgtGgt11AY.90.000068
N180S180TaGtaCt11AY.90.000068
N180S180NaGtaAt11AY.9.10.000084
N180S180IaGtaTt11AY.9.20.000037
N180S180delAGT---11AY.950.000761
N180S180TaGtaCt11AY.980.000079
N180S180IaGtaTt11AY.980.000079
N180S180TaGtaCt11AY.99.10.001553
N180S180IaGtaTt11AZ.20.000821
N180S180SagTagC11B0.000128
N180S180NaGtaAt11B0.000128
N180S180IaGtaTt11B0.000128
N180S180del1Agt-gt11B.10.000009
N180S180IaGtaTt11B.1.1.10.000327
N180S180SagTagC11B.1.1.2030.016949
N180S180IaGtaTt11B.1.1.2070.001182
N180S180IaGtaTt11B.1.1.2160.00089
N180S180IaGtaTt11B.1.1.2320.001815
N180S180SagTagC11B.1.1.250.000569
N180S180TaGtaCt11B.1.1.280.000311
N180S180TaGtaCt11B.1.1.2840.000107
N180S180IaGtaTt11B.1.1.2840.000107
N180S180TaGtaCt11B.1.1.3180.000302
N180S180SagTagC11B.1.1.3260.001761
N180S180delAGT---11B.1.1.330.000421
N180S180SagTagC11B.1.1.330.000421
N180S180TaGtaCt11B.1.1.3720.000689
N180S180NaGtaAt11B.1.1.390.00051
N180S180RagTagG11B.1.1.4090.002833
N180S180IaGtaTt11B.1.1.4480.002033
N180S180IaGtaTt11B.1.1.4590.015385
N180S180IaGtaTt11B.1.1.4620.008621
N180S180CAgtTgt11B.1.1.70.000001
N180S180IaGtaTt11B.1.110.10.1
N180S180IaGtaTt11B.1.1130.015625
N180S180GAgtGgt11B.1.1420.002899
N180S180IaGtaTt11B.1.1570.002985
N180S180RAgtCgt11B.1.1600.000031
N180S180IaGtaTt11B.1.1690.014925
N180S180CAgtTgt11B.1.177.110.001698
N180S180IaGtaTt11B.1.177.300.002513
N180S180SagTagC11B.1.177.530.002392
N180S180TaGtaCt11B.1.177.580.001332
N180S180IaGtaTt11B.1.177.630.002703
N180S180delAGT---11B.1.177.680.015152
N180S180IaGtaTt11B.1.177.80.000752
N180S180CAgtTgt11B.1.177.860.000183
N180S180RagTagG11B.1.1800.05
N180S180NaGtaAt11B.1.1800.05
N180S180CAgtTgt11B.1.20.000009
N180S180delAGT---11B.1.20.000009
N180S180CAgtTgt11B.1.2180.005155
N180S180SagTagC11B.1.220.001318
N180S180CAgtTgt11B.1.221.20.004016
N180S180TaGtaCt11B.1.2220.001692
N180S180SagTagC11B.1.2340.000132
N180S180SagTagC11B.1.2430.00007
N180S180CAgtTgt11B.1.2580.000067
N180S180RagTagG11B.1.2580.000067
N180S180IaGtaTt11B.1.258.140.00098
N180S180IaGtaTt11B.1.30.002618
N180S180IaGtaTt11B.1.3500.002933
N180S180delAGT---11B.1.3510.00003
N180S180IaGtaTt11B.1.351.20.000303
N180S180RagTagA11B.1.351.30.000876
N180S180IaGtaTt11B.1.360.000146
N180S180RagTagG11B.1.360.000146
N180S180TaGtaCt11B.1.360.000146
N180S180IaGtaTt11B.1.36.240.006173
N180S180SagTagC11B.1.36.290.000517
N180S180SagTagC11B.1.36.360.000602
N180S180SagTagC11B.1.3670.000792
N180S180del2AGt--t11B.1.3690.000285
N180S180IaGtaTt11B.1.3820.008929
N180S180IaGtaTt11B.1.3960.000706
N180S180CAgtTgt11B.1.4000.000429
N180S180TaGtaCt11B.1.4040.001302
N180S180delAGT---11B.1.416.10.001563
N180S180delAGT---11B.1.4270.00005
N180S180NaGtaAt11B.1.4290.000024
N180S180TaGtaCt11B.1.4290.000024
N180S180SagTagC11B.1.4290.000024
N180S180CAgtTgt11B.1.4360.001029
N180S180delAGT---11B.1.4650.003802
N180S180TaGtaCt11B.1.4660.023256
N180S180IaGtaTt11B.1.4790.038462
N180S180IaGtaTt11B.1.4920.007042
N180S180IaGtaTt11B.1.4990.00105
N180S180IaGtaTt11B.1.5040.03125
N180S180NaGtaAt11B.1.5050.004386
N180S180IaGtaTt11B.1.5210.004975
N180S180delAGT---11B.1.5250.000113
N180S180CAgtTgt11B.1.5430.01
N180S180delAGT---11B.1.5600.00463
N180S180SagTagC11B.1.5610.000397
N180S180delAGT---11B.1.5760.000907
N180S180SagTagC11B.1.5770.000687
N180S180delAGT---11B.1.5960.000087
N180S180SagTagC11B.1.5960.000087
N180S180IaGtaTt11B.1.6120.002653
N180S180delAGT---11B.1.617.10.000129
N180S180CAgtTgt11B.1.617.10.000129
N180S180SagTagC11B.1.617.10.000129
N180S180delAGT---11B.1.617.20.000004
N180S180CAgtTgt11B.1.617.20.000004
N180S180DAGtGAt11B.1.617.20.000004
N180S180GAgtGgt11B.1.6350.017544
N180S180NaGtaAt11B.1.6370.000073
N180S180CAgtTgt11B.270.015385
N180S180IaGtaTt11B.280.003279
N180S180IaGtaTt11B.390.002331
N180S180IaGtaTt11B.400.000364
N180S180TaGtaCt11B.60.00091
N180S180IaGtaTt11B.60.00091
N180S180SagTagC11C.10.002392
N180S180GAgtGgt11C.1.20.004255
N180S180SagTagC11C.350.000774
N180S180del2AGT--N11C.37.10.002618
N180S180GAgtGgt11D.20.000075
N180S180del2AGt--t11D.20.000075
N180S180SagTagC11D.20.000075
N180S180IaGtaTt11N.90.005952
N180S180delAGT---11P.10.000016
N180S180RagTagG11P.1.10.000318
N180S180IaGtaTt11P.1.140.000048
N180S180SagTagC11P.1.150.000232
N180S180IaGtaTt11P.1.150.000232
N180S180delAGT---11P.1.150.000232
N180S180IaGtaTt11P.1.20.001156
N180S180TaGtaCt11Q.10.000126
N180S180SagTagC11Q.80.000165
N180S180IaGtaTt11Q.80.000165
N180S180TaGtaCt11R.10.00009
N180S180SagTagC11R.10.00009
N180S180NaGtaAt11R.10.00009