CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 179

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	179	G179S		nonsyn	Ggc	Agc	2762	2759	0.998914	28808-28810
N	179	G179S		nonsyn	GgC	AgT	2762	2	0.000724113	28808-28810
N	179	G179S		nonsyn	GGc	TCc	2762	1	0.000362056	28808-28810
N	179	G179V		nonsyn	gGc	gTc	1597	1596	0.999374	28808-28810
N	179	G179V		nonsyn	gGC	gTT	1597	1	0.000626174	28808-28810
N	179	G179G		syn	ggC	ggT	780	732	0.938462	28808-28810
N	179	G179G		syn	ggC	ggA	780	48	0.0615385	28808-28810
N	179	G179D		nonsyn	gGc	gAc	351	350	0.997151	28808-28810
N	179	G179D		nonsyn	gGC	gAT	351	1	0.002849	28808-28810
N	179	G179C		nonsyn	Ggc	Tgc	348	347	0.997126	28808-28810
N	179	G179C		nonsyn	GgC	TgT	348	1	0.00287356	28808-28810
N	179	G179del		del	GGC	---	58	58	1	28808-28810
N	179	G179R		nonsyn	Ggc	Cgc	16	14	0.875	28808-28810
N	179	G179R		nonsyn	GgC	AgA	16	2	0.125	28808-28810
N	179	G179N		nonsyn	GGc	AAc	6	6	1	28808-28810
N	179	G179A		nonsyn	gGc	gCc	5	5	1	28808-28810
N	179	G179del2		del	GGc	--c	1	1	1	28808-28810
N	179	G179del1		del	Ggc	-gc	1	1	1	28808-28810
N	179	G179F		nonsyn	GGc	TTc	1	1	1	28808-28810

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	179	G179S	Ggc	Agc	2759	2762	All	0.000528
N	179	G179S	GgC	AgT	2	2762	All	0
N	179	G179S	GGc	TCc	1	2762	All	0
N	179	G179V	gGc	gTc	1596	1597	All	0.000305
N	179	G179V	gGC	gTT	1	1597	All	0
N	179	G179V	gGc	gTc	1172	1172	AY.50	0.936851
N	179	G179S	Ggc	Agc	860	860	AY.103	0.00534
N	179	G179G	ggC	ggT	732	780	All	0.00014
N	179	G179G	ggC	ggA	48	780	All	0.000009
N	179	G179D	gGc	gAc	350	351	All	0.000067
N	179	G179D	gGC	gAT	1	351	All	0
N	179	G179C	Ggc	Tgc	347	348	All	0.000066
N	179	G179C	GgC	TgT	1	348	All	0
N	179	G179S	Ggc	Agc	310	310	B.1.617.2	0.001167
N	179	G179S	Ggc	Agc	226	228	B.1.1.7	0.000202
N	179	G179S	GgC	AgT	2	228	B.1.1.7	0.000002
N	179	G179V	gGc	gTc	178	179	AY.4	0.000277
N	179	G179V	gGC	gTT	1	179	AY.4	0.000002
N	179	G179S	Ggc	Agc	162	162	AY.47	0.005039
N	179	G179S	Ggc	Agc	157	157	AY.44	0.000956
N	179	G179S	Ggc	Agc	149	149	AY.99.2	0.013731
N	179	G179G	ggC	ggT	122	122	P.1	0.001922
N	179	G179G	ggC	ggT	96	109	B.1.1.7	0.000086
N	179	G179G	ggC	ggA	13	109	B.1.1.7	0.000012
N	179	G179S	Ggc	Agc	91	91	AY.4	0.000142
N	179	G179S	Ggc	Agc	85	85	AY.43	0.000377
N	179	G179G	ggC	ggT	82	82	AZ.1	0.071119
N	179	G179G	ggC	ggT	47	70	AY.4	0.000073
N	179	G179G	ggC	ggA	23	70	AY.4	0.000036
N	179	G179G	ggC	ggT	65	65	B.1.2	0.000572
N	179	G179D	gGc	gAc	64	64	AY.103	0.000397
N	179	G179del	GGC	---	58	58	All	0.000011
N	179	G179V	gGc	gTc	56	56	B.1.258	0.003727
N	179	G179S	Ggc	Agc	52	52	AY.25	0.000313
N	179	G179D	gGc	gAc	49	49	B.1.1.7	0.000044
N	179	G179S	Ggc	Agc	47	47	AY.29	0.000741
N	179	G179S	Ggc	Agc	43	43	B.1.480	0.106965
N	179	G179C	Ggc	Tgc	41	41	B.1.117	0.5125
N	179	G179S	Ggc	Agc	39	39	AY.3	0.000388
N	179	G179S	Ggc	Agc	35	35	AY.102	0.000928
N	179	G179S	Ggc	Agc	34	34	AY.39	0.00084
N	179	G179S	Ggc	Agc	33	33	B.1.2	0.000291
N	179	G179S	Ggc	Agc	31	31	B.1.1.316	0.028677
N	179	G179S	Ggc	Agc	29	29	B.1.334	0.527273
N	179	G179D	gGc	gAc	27	27	AY.4	0.000042
N	179	G179C	Ggc	Tgc	25	25	AY.4	0.000039
N	179	G179C	Ggc	Tgc	25	25	B.1.1.7	0.000022
N	179	G179G	ggC	ggT	25	25	B.1.551	0.032258
N	179	G179C	Ggc	Tgc	23	23	AY.119	0.000812
N	179	G179C	Ggc	Tgc	23	23	AY.25	0.000138
N	179	G179G	ggC	ggT	21	23	B.1.617.2	0.000079
N	179	G179G	ggC	ggA	2	23	B.1.617.2	0.000008
N	179	G179G	ggC	ggT	22	22	AY.36	0.003261
N	179	G179S	Ggc	Agc	22	22	AY.5	0.000454
N	179	G179V	gGc	gTc	22	22	B.1.1.311	0.00788
N	179	G179S	Ggc	Agc	21	21	B.1.177	0.000277
N	179	G179D	gGc	gAc	21	21	B.1.2	0.000185
N	179	G179S	Ggc	Agc	19	19	AY.12	0.006005
N	179	G179S	Ggc	Agc	18	18	AY.26	0.00051
N	179	G179V	gGc	gTc	18	18	B.1.1.7	0.000016
N	179	G179G	ggC	ggT	16	17	B.1.1	0.00029
N	179	G179G	ggC	ggA	1	17	B.1.1	0.000018
N	179	G179V	gGc	gTc	17	17	B.1.617.2	0.000064
N	179	G179R	Ggc	Cgc	14	16	All	0.000003
N	179	G179R	GgC	AgA	2	16	All	0
N	179	G179S	Ggc	Agc	16	16	AY.38	0.007988
N	179	G179C	Ggc	Tgc	16	16	B.1	0.000147
N	179	G179G	ggC	ggT	15	15	B.1.429	0.000353
N	179	G179S	Ggc	Agc	15	15	P.1.14	0.000717
N	179	G179G	ggC	ggT	14	14	AY.25	0.000084
N	179	G179C	Ggc	Tgc	14	14	AY.41	0.004115
N	179	G179D	gGc	gAc	14	14	B.1	0.000128
N	179	G179S	Ggc	Agc	14	14	B.1.160	0.000437
N	179	G179C	Ggc	Tgc	14	14	B.1.617.2	0.000053
N	179	G179S	Ggc	Agc	13	13	AY.119	0.000459
N	179	G179S	Ggc	Agc	13	13	P.1	0.000205
N	179	G179G	ggC	ggT	12	12	AY.43	0.000053
N	179	G179del	GGC	---	12	12	B.1	0.00011
N	179	G179D	gGc	gAc	12	12	B.1.617.2	0.000045
N	179	G179D	gGc	gAc	11	11	AY.43	0.000049
N	179	G179R	Ggc	Cgc	11	11	B.1	0.000101
N	179	G179V	gGc	gTc	11	11	B.1	0.000101
N	179	G179del	GGC	---	11	11	B.1.1.7	0.00001
N	179	G179D	gGc	gAc	11	11	B.1.429	0.000259
N	179	G179G	ggC	ggT	11	11	P.1.14	0.000526
N	179	G179G	ggC	ggT	10	10	AY.44	0.000061
N	179	G179V	gGc	gTc	10	10	AY.49	0.031949
N	179	G179D	gGc	gAc	10	10	AY.75	0.00056
N	179	G179D	gGc	gAc	10	10	B.1.177.60	0.002184
N	179	G179D	gGc	gAc	9	9	AY.90	0.00616
N	179	G179D	gGc	gAc	9	9	B.1.1	0.000163
N	179	G179S	Ggc	Agc	9	9	B.1.1.241	0.018634
N	179	G179D	gGc	gAc	9	9	B.1.177	0.000119
N	179	G179G	ggC	ggT	8	8	A	0.003096
N	179	G179C	Ggc	Tgc	8	8	AY.103	0.00005
N	179	G179G	ggC	ggT	8	8	AY.4.2.1	0.001192
N	179	G179C	Ggc	Tgc	8	8	AY.5	0.000165
N	179	G179D	gGc	gAc	8	8	AY.50	0.006395
N	179	G179G	ggC	ggT	7	7	AY.102	0.000186
N	179	G179G	ggC	ggT	5	7	AY.103	0.000031
N	179	G179G	ggC	ggA	2	7	AY.103	0.000012
N	179	G179S	Ggc	Agc	7	7	AY.117	0.000592
N	179	G179G	ggC	ggT	7	7	AY.118	0.000439
N	179	G179G	ggC	ggT	7	7	AY.119	0.000247
N	179	G179D	gGc	gAc	7	7	AY.120	0.00026
N	179	G179S	Ggc	Agc	7	7	AY.20	0.000272
N	179	G179S	Ggc	Agc	7	7	AY.4.2	0.000152
N	179	G179C	Ggc	Tgc	7	7	AY.98	0.000553
N	179	G179G	ggC	ggT	7	7	B.1.160	0.000218
N	179	G179S	Ggc	Agc	7	7	B.1.177.4	0.001477
N	179	G179C	Ggc	Tgc	7	7	B.1.2	0.000062
N	179	G179S	Ggc	Agc	7	7	B.1.429	0.000165
N	179	G179N	GGc	AAc	6	6	All	0.000001
N	179	G179S	Ggc	Agc	6	6	AY.23	0.000418
N	179	G179D	gGc	gAc	6	6	AY.25	0.000036
N	179	G179C	Ggc	Tgc	6	6	AY.26	0.00017
N	179	G179G	ggC	ggT	5	6	AY.26	0.000142
N	179	G179G	ggC	ggA	1	6	AY.26	0.000028
N	179	G179C	Ggc	Tgc	6	6	AY.43	0.000027
N	179	G179S	Ggc	Agc	6	6	AY.46	0.000624
N	179	G179G	ggC	ggT	6	6	AY.47	0.000187
N	179	G179S	Ggc	Agc	6	6	B.1	0.000055
N	179	G179V	gGc	gTc	6	6	B.1.1.448	0.012195
N	179	G179C	Ggc	Tgc	6	6	P.1	0.000095
N	179	G179V	gGc	gTc	6	6	P.1	0.000095
N	179	G179A	gGc	gCc	5	5	All	0.000001
N	179	G179V	gGc	gTc	5	5	AY.103	0.000031
N	179	G179V	gGc	gTc	5	5	AY.120	0.000186
N	179	G179D	gGc	gAc	5	5	AY.23	0.000349
N	179	G179G	ggC	ggT	5	5	AY.3	0.00005
N	179	G179C	Ggc	Tgc	5	5	AY.34	0.000485
N	179	G179D	gGc	gAc	5	5	AY.39.1	0.000198
N	179	G179G	ggC	ggT	5	5	AY.4.2	0.000108
N	179	G179C	Ggc	Tgc	5	5	AY.44	0.00003
N	179	G179C	Ggc	Tgc	5	5	AY.47	0.000156
N	179	G179C	Ggc	Tgc	5	5	AY.6	0.000206
N	179	G179G	ggC	ggT	5	5	AY.61	0.000524
N	179	G179S	Ggc	Agc	5	5	AY.75.1	0.000902
N	179	G179S	Ggc	Agc	5	5	B.1.1	0.000091
N	179	G179C	Ggc	Tgc	5	5	B.1.177	0.000066
N	179	G179S	Ggc	Agc	5	5	B.1.351	0.000149
N	179	G179V	gGc	gTc	5	5	B.1.526	0.000118
N	179	G179S	Ggc	Agc	4	4	AY.100	0.000184
N	179	G179S	Ggc	Agc	4	4	AY.110	0.000451
N	179	G179G	ggC	ggT	4	4	AY.111	0.000733
N	179	G179D	gGc	gAc	4	4	AY.113	0.00057
N	179	G179V	gGc	gTc	4	4	AY.26	0.000113
N	179	G179S	Ggc	Agc	4	4	AY.27	0.000259
N	179	G179D	gGc	gAc	4	4	AY.29	0.000063
N	179	G179C	Ggc	Tgc	4	4	AY.3	0.00004
N	179	G179G	ggC	ggT	4	4	AY.32	0.00213
N	179	G179G	ggC	ggT	4	4	AY.34	0.000388
N	179	G179S	Ggc	Agc	4	4	AY.9.2	0.000147
N	179	G179S	Ggc	Agc	4	4	AY.98	0.000316
N	179	G179S	Ggc	Agc	4	4	AY.98.1	0.000194
N	179	G179V	gGc	gTc	4	4	B.1.1	0.000073
N	179	G179G	ggC	ggT	4	4	B.1.221	0.000284
N	179	G179G	ggC	ggT	4	4	B.1.351	0.000119
N	179	G179D	gGc	gAc	4	4	B.1.526	0.000094
N	179	G179C	Ggc	Tgc	3	3	AY.120.2.1	0.001495
N	179	G179C	Ggc	Tgc	3	3	AY.39	0.000074
N	179	G179G	ggC	ggT	2	3	AY.39	0.000049
N	179	G179G	ggC	ggA	1	3	AY.39	0.000025
N	179	G179C	Ggc	Tgc	3	3	AY.39.1	0.000119
N	179	G179G	ggC	ggT	3	3	AY.42	0.000121
N	179	G179V	gGc	gTc	3	3	AY.43	0.000013
N	179	G179V	gGc	gTc	3	3	AY.44	0.000018
N	179	G179G	ggC	ggT	3	3	AY.45	0.000365
N	179	G179S	Ggc	Agc	3	3	AY.45	0.000365
N	179	G179C	Ggc	Tgc	3	3	AY.46.4	0.000494
N	179	G179S	Ggc	Agc	3	3	AY.46.6	0.000217
N	179	G179D	gGc	gAc	3	3	AY.5	0.000062
N	179	G179G	ggC	ggT	2	3	AY.5	0.000041
N	179	G179G	ggC	ggA	1	3	AY.5	0.000021
N	179	G179S	Ggc	Agc	3	3	AY.61	0.000314
N	179	G179C	Ggc	Tgc	3	3	AY.7	0.000588
N	179	G179D	gGc	gAc	3	3	AY.7.2	0.001678
N	179	G179S	Ggc	Agc	3	3	AY.77	0.003382
N	179	G179C	Ggc	Tgc	3	3	AY.9.2	0.00011
N	179	G179S	Ggc	Agc	3	3	B.1.1.25	0.001706
N	179	G179V	gGc	gTc	3	3	B.1.1.277	0.002276
N	179	G179C	Ggc	Tgc	3	3	B.1.160	0.000094
N	179	G179V	gGc	gTc	3	3	B.1.177	0.00004
N	179	G179V	gGc	gTc	3	3	B.1.243	0.000209
N	179	G179S	Ggc	Agc	2	3	B.1.36	0.000292
N	179	G179S	GGc	TCc	1	3	B.1.36	0.000146
N	179	G179C	Ggc	Tgc	3	3	C.37	0.000348
N	179	G179V	gGc	gTc	3	3	D.2	0.000225
N	179	G179D	gGc	gAc	3	3	P.1	0.000047
N	179	G179D	gGc	gAc	3	3	P.1.4	0.00293
N	179	G179S	Ggc	Agc	3	3	P.2	0.00056
N	179	G179S	Ggc	Agc	2	2	AD.1	0.00823
N	179	G179V	gGc	gTc	2	2	AY.100	0.000092
N	179	G179D	gGc	gAc	2	2	AY.117	0.000169
N	179	G179V	gGc	gTc	2	2	AY.118	0.000125
N	179	G179S	Ggc	Agc	2	2	AY.120	0.000074
N	179	G179S	Ggc	Agc	2	2	AY.120.2.1	0.000997
N	179	G179G	ggC	ggT	2	2	AY.121	0.000271
N	179	G179G	ggC	ggT	2	2	AY.14	0.000176
N	179	G179S	Ggc	Agc	2	2	AY.19	0.002281
N	179	G179G	ggC	ggT	2	2	AY.2	0.000712
N	179	G179D	gGC	gAT	1	2	AY.26	0.000028
N	179	G179D	gGc	gAc	1	2	AY.26	0.000028
N	179	G179G	ggC	ggT	2	2	AY.29	0.000032
N	179	G179C	Ggc	Tgc	2	2	AY.29	0.000032
N	179	G179C	Ggc	Tgc	2	2	AY.29.1	0.000441
N	179	G179V	gGc	gTc	2	2	AY.3	0.00002
N	179	G179D	gGc	gAc	2	2	AY.3	0.00002
N	179	G179S	Ggc	Agc	2	2	AY.3.1	0.000171
N	179	G179V	gGc	gTc	2	2	AY.33	0.000134
N	179	G179S	Ggc	Agc	2	2	AY.34	0.000194
N	179	G179V	gGc	gTc	2	2	AY.37	0.000632
N	179	G179R	Ggc	Cgc	2	2	AY.4	0.000003
N	179	G179V	gGc	gTc	2	2	AY.4.2	0.000043
N	179	G179del	GGC	---	2	2	AY.40	0.001929
N	179	G179S	Ggc	Agc	2	2	AY.42	0.00008
N	179	G179del	GGC	---	2	2	AY.43	0.000009
N	179	G179G	ggC	ggT	2	2	AY.46.4	0.000329
N	179	G179S	Ggc	Agc	2	2	AY.5.4	0.000553
N	179	G179del	GGC	---	2	2	AY.50	0.001599
N	179	G179G	ggC	ggT	2	2	AY.54	0.000191
N	179	G179S	Ggc	Agc	2	2	AY.58	0.001815
N	179	G179C	Ggc	Tgc	2	2	AY.59	0.001059
N	179	G179D	gGc	gAc	2	2	AY.6	0.000082
N	179	G179C	Ggc	Tgc	2	2	AY.75	0.000112
N	179	G179V	gGc	gTc	2	2	AY.75	0.000112
N	179	G179G	ggC	ggT	2	2	AY.84	0.000875
N	179	G179G	ggC	ggT	2	2	AY.85	0.000854
N	179	G179S	Ggc	Agc	2	2	AY.88	0.001768
N	179	G179S	Ggc	Agc	2	2	AY.9	0.000135
N	179	G179C	Ggc	Tgc	2	2	AY.9.1	0.000167
N	179	G179G	ggC	ggT	2	2	AY.9.2	0.000073
N	179	G179N	GGc	AAc	2	2	AY.9.2	0.000073
N	179	G179C	Ggc	Tgc	2	2	AY.95	0.001522
N	179	G179G	ggC	ggT	2	2	AY.98	0.000158
N	179	G179C	Ggc	Tgc	2	2	B	0.000256
N	179	G179G	ggC	ggA	2	2	B.1	0.000018
N	179	G179C	Ggc	Tgc	2	2	B.1.1	0.000036
N	179	G179del	GGC	---	2	2	B.1.1	0.000036
N	179	G179G	ggC	ggT	2	2	B.1.1.1	0.000653
N	179	G179S	Ggc	Agc	2	2	B.1.1.222	0.000408
N	179	G179C	Ggc	Tgc	2	2	B.1.1.222	0.000408
N	179	G179V	gGc	gTc	2	2	B.1.1.270	0.020619
N	179	G179S	Ggc	Agc	2	2	B.1.1.277	0.001517
N	179	G179del	GGC	---	2	2	B.1.1.28	0.000622
N	179	G179C	Ggc	Tgc	2	2	B.1.1.294	0.002532
N	179	G179S	Ggc	Agc	2	2	B.1.1.298	0.001724
N	179	G179D	gGc	gAc	2	2	B.1.1.301	0.002358
N	179	G179S	Ggc	Agc	2	2	B.1.1.317	0.000823
N	179	G179C	Ggc	Tgc	2	2	B.1.1.318	0.000604
N	179	G179S	Ggc	Agc	2	2	B.1.1.39	0.001019
N	179	G179S	Ggc	Agc	2	2	B.1.1.434	0.000697
N	179	G179S	Ggc	Agc	2	2	B.1.1.519	0.000079
N	179	G179G	ggC	ggT	2	2	B.1.177	0.000026
N	179	G179del	GGC	---	2	2	B.1.177	0.000026
N	179	G179S	Ggc	Agc	2	2	B.1.177.21	0.000153
N	179	G179V	gGc	gTc	2	2	B.1.2	0.000018
N	179	G179A	gGc	gCc	2	2	B.1.2	0.000018
N	179	G179V	gGc	gTc	2	2	B.1.210	0.004264
N	179	G179S	Ggc	Agc	2	2	B.1.221.1	0.005814
N	179	G179C	Ggc	Tgc	2	2	B.1.243	0.000139
N	179	G179S	Ggc	Agc	2	2	B.1.258.16	0.003273
N	179	G179C	Ggc	Tgc	2	2	B.1.351	0.000059
N	179	G179S	Ggc	Agc	2	2	B.1.427	0.000101
N	179	G179C	Ggc	Tgc	2	2	B.1.429	0.000047
N	179	G179C	Ggc	Tgc	2	2	B.1.499	0.002101
N	179	G179S	Ggc	Agc	2	2	B.1.526	0.000047
N	179	G179C	Ggc	Tgc	2	2	B.1.564	0.000852
N	179	G179V	gGc	gTc	2	2	B.1.595	0.000522
N	179	G179G	ggC	ggT	2	2	B.1.596	0.000174
N	179	G179G	ggC	ggT	2	2	B.1.609	0.000959
N	179	G179V	gGc	gTc	2	2	B.1.617.1	0.000258
N	179	G179del	GGC	---	2	2	C.37.1	0.005236
N	179	G179G	ggC	ggT	2	2	D.2	0.00015
N	179	G179S	Ggc	Agc	2	2	N.6	0.014184
N	179	G179S	Ggc	Agc	2	2	P.1.15	0.000465
N	179	G179S	Ggc	Agc	2	2	Q.8	0.00033
N	179	G179G	ggC	ggT	2	2	Q.8	0.00033
N	179	G179D	gGc	gAc	1	1		0.055556
N	179	G179S	Ggc	Agc	1	1		0.055556
N	179	G179G	ggC	ggT	1	1	AD.2	0.000219
N	179	G179del1	Ggc	-gc	1	1	All	0
N	179	G179F	GGc	TTc	1	1	All	0
N	179	G179del2	GGc	--c	1	1	All	0
N	179	G179D	gGc	gAc	1	1	AY.100	0.000046
N	179	G179G	ggC	ggT	1	1	AY.100	0.000046
N	179	G179del	GGC	---	1	1	AY.102	0.000027
N	179	G179C	Ggc	Tgc	1	1	AY.102	0.000027
N	179	G179C	Ggc	Tgc	1	1	AY.106	0.000335
N	179	G179C	Ggc	Tgc	1	1	AY.109	0.00074
N	179	G179D	gGc	gAc	1	1	AY.109	0.00074
N	179	G179N	GGc	AAc	1	1	AY.110	0.000113
N	179	G179S	Ggc	Agc	1	1	AY.111	0.000183
N	179	G179V	gGc	gTc	1	1	AY.113	0.000142
N	179	G179C	Ggc	Tgc	1	1	AY.115	0.005208
N	179	G179C	Ggc	Tgc	1	1	AY.116	0.000287
N	179	G179G	ggC	ggT	1	1	AY.117	0.000085
N	179	G179S	Ggc	Agc	1	1	AY.118	0.000063
N	179	G179D	gGc	gAc	1	1	AY.119	0.000035
N	179	G179D	gGc	gAc	1	1	AY.12	0.000316
N	179	G179C	Ggc	Tgc	1	1	AY.120	0.000037
N	179	G179S	Ggc	Agc	1	1	AY.13	0.000161
N	179	G179S	Ggc	Agc	1	1	AY.14	0.000088
N	179	G179S	Ggc	Agc	1	1	AY.15	0.002222
N	179	G179V	gGc	gTc	1	1	AY.16	0.00038
N	179	G179D	gGc	gAc	1	1	AY.16	0.00038
N	179	G179C	Ggc	Tgc	1	1	AY.16.1	0.00047
N	179	G179S	Ggc	Agc	1	1	AY.2	0.000356
N	179	G179D	gGc	gAc	1	1	AY.2	0.000356
N	179	G179G	ggC	ggT	1	1	AY.20	0.000039
N	179	G179D	gGc	gAc	1	1	AY.20	0.000039
N	179	G179V	gGc	gTc	1	1	AY.20	0.000039
N	179	G179G	ggC	ggT	1	1	AY.23	0.00007
N	179	G179S	Ggc	Agc	1	1	AY.23.1	0.000417
N	179	G179V	gGc	gTc	1	1	AY.25	0.000006
N	179	G179del	GGC	---	1	1	AY.25	0.000006
N	179	G179S	Ggc	Agc	1	1	AY.28	0.00189
N	179	G179V	gGc	gTc	1	1	AY.29	0.000016
N	179	G179del	GGC	---	1	1	AY.29	0.000016
N	179	G179N	GGc	AAc	1	1	AY.3	0.00001
N	179	G179G	ggC	ggT	1	1	AY.33	0.000067
N	179	G179S	Ggc	Agc	1	1	AY.33	0.000067
N	179	G179S	Ggc	Agc	1	1	AY.36	0.000148
N	179	G179S	Ggc	Agc	1	1	AY.37	0.000316
N	179	G179A	gGc	gCc	1	1	AY.39	0.000025
N	179	G179V	gGc	gTc	1	1	AY.39	0.000025
N	179	G179G	ggC	ggT	1	1	AY.39.1	0.00004
N	179	G179A	gGc	gCc	1	1	AY.4	0.000002
N	179	G179S	Ggc	Agc	1	1	AY.4.5	0.000107
N	179	G179S	Ggc	Agc	1	1	AY.40	0.000964
N	179	G179D	gGc	gAc	1	1	AY.42	0.00004
N	179	G179D	gGc	gAc	1	1	AY.44	0.000006
N	179	G179C	Ggc	Tgc	1	1	AY.45	0.000122
N	179	G179del	GGC	---	1	1	AY.46	0.000104
N	179	G179S	Ggc	Agc	1	1	AY.46.1	0.001027
N	179	G179C	Ggc	Tgc	1	1	AY.46.1	0.001027
N	179	G179S	Ggc	Agc	1	1	AY.46.4	0.000165
N	179	G179V	gGc	gTc	1	1	AY.46.4	0.000165
N	179	G179G	ggC	ggT	1	1	AY.46.6	0.000072
N	179	G179D	gGc	gAc	1	1	AY.48	0.000465
N	179	G179S	Ggc	Agc	1	1	AY.5.3	0.000337
N	179	G179D	gGc	gAc	1	1	AY.5.3	0.000337
N	179	G179A	gGc	gCc	1	1	AY.50	0.000799
N	179	G179V	gGc	gTc	1	1	AY.54	0.000095
N	179	G179S	Ggc	Agc	1	1	AY.54	0.000095
N	179	G179S	Ggc	Agc	1	1	AY.55	0.000917
N	179	G179V	gGc	gTc	1	1	AY.61	0.000105
N	179	G179S	Ggc	Agc	1	1	AY.64	0.000595
N	179	G179V	gGc	gTc	1	1	AY.64	0.000595
N	179	G179S	Ggc	Agc	1	1	AY.65	0.000533
N	179	G179C	Ggc	Tgc	1	1	AY.69	0.000187
N	179	G179S	Ggc	Agc	1	1	AY.7.1	0.000113
N	179	G179C	Ggc	Tgc	1	1	AY.7.2	0.000559
N	179	G179S	Ggc	Agc	1	1	AY.73	0.000665
N	179	G179V	gGc	gTc	1	1	AY.74	0.000116
N	179	G179N	GGc	AAc	1	1	AY.75	0.000056
N	179	G179S	Ggc	Agc	1	1	AY.75	0.000056
N	179	G179del	GGC	---	1	1	AY.75	0.000056
N	179	G179G	ggC	ggT	1	1	AY.75	0.000056
N	179	G179D	gGc	gAc	1	1	AY.75.1	0.00018
N	179	G179C	Ggc	Tgc	1	1	AY.75.1	0.00018
N	179	G179V	gGc	gTc	1	1	AY.8	0.000606
N	179	G179S	Ggc	Agc	1	1	AY.82	0.001357
N	179	G179S	Ggc	Agc	1	1	AY.85	0.000427
N	179	G179D	gGc	gAc	1	1	AY.88	0.000884
N	179	G179C	Ggc	Tgc	1	1	AY.9	0.000068
N	179	G179V	gGc	gTc	1	1	AY.9	0.000068
N	179	G179G	ggC	ggT	1	1	AY.9	0.000068
N	179	G179G	ggC	ggT	1	1	AY.9.1	0.000084
N	179	G179S	Ggc	Agc	1	1	AY.9.1	0.000084
N	179	G179V	gGc	gTc	1	1	AY.9.2	0.000037
N	179	G179G	ggC	ggA	1	1	AY.91	0.00073
N	179	G179del	GGC	---	1	1	AY.95	0.000761
N	179	G179D	gGc	gAc	1	1	AY.98.1	0.000048
N	179	G179G	ggC	ggT	1	1	AY.98.1	0.000048
N	179	G179D	gGc	gAc	1	1	AY.99	0.001049
N	179	G179S	Ggc	Agc	1	1	AY.99.1	0.001553
N	179	G179D	gGc	gAc	1	1	AY.99.2	0.000092
N	179	G179S	Ggc	Agc	1	1	B	0.000128
N	179	G179N	GGc	AAc	1	1	B.1	0.000009
N	179	G179S	Ggc	Agc	1	1	B.1.1.174	0.003378
N	179	G179D	gGc	gAc	1	1	B.1.1.176	0.000439
N	179	G179V	gGc	gTc	1	1	B.1.1.198	0.001468
N	179	G179D	gGc	gAc	1	1	B.1.1.207	0.001182
N	179	G179C	Ggc	Tgc	1	1	B.1.1.207	0.001182
N	179	G179V	gGc	gTc	1	1	B.1.1.216	0.00089
N	179	G179V	gGc	gTc	1	1	B.1.1.219	0.005
N	179	G179S	Ggc	Agc	1	1	B.1.1.290	0.018182
N	179	G179G	ggC	ggT	1	1	B.1.1.305	0.003861
N	179	G179C	Ggc	Tgc	1	1	B.1.1.306	0.000438
N	179	G179S	Ggc	Agc	1	1	B.1.1.306	0.000438
N	179	G179C	Ggc	Tgc	1	1	B.1.1.311	0.000358
N	179	G179G	ggC	ggT	1	1	B.1.1.317	0.000412
N	179	G179S	Ggc	Agc	1	1	B.1.1.318	0.000302
N	179	G179G	ggC	ggT	1	1	B.1.1.318	0.000302
N	179	G179D	gGc	gAc	1	1	B.1.1.33	0.000421
N	179	G179S	Ggc	Agc	1	1	B.1.1.33	0.000421
N	179	G179del	GGC	---	1	1	B.1.1.33	0.000421
N	179	G179G	ggC	ggT	1	1	B.1.1.39	0.00051
N	179	G179D	gGc	gAc	1	1	B.1.1.409	0.002833
N	179	G179del1	Ggc	-gc	1	1	B.1.1.432	0.001266
N	179	G179S	Ggc	Agc	1	1	B.1.1.44	0.00241
N	179	G179G	ggC	ggT	1	1	B.1.1.519	0.00004
N	179	G179C	Ggc	Tgc	1	1	B.1.1.523	0.001563
N	179	G179R	GgC	AgA	1	1	B.1.1.7	0.000001
N	179	G179G	ggC	ggT	1	1	B.1.1.70	0.000341
N	179	G179G	ggC	ggT	1	1	B.1.111	0.001175
N	179	G179G	ggC	ggT	1	1	B.1.149	0.003425
N	179	G179G	ggC	ggT	1	1	B.1.158	0.02381
N	179	G179D	gGc	gAc	1	1	B.1.160	0.000031
N	179	G179C	Ggc	Tgc	1	1	B.1.160.16	0.000929
N	179	G179C	Ggc	Tgc	1	1	B.1.177.17	0.000821
N	179	G179D	gGc	gAc	1	1	B.1.177.23	0.003236
N	179	G179G	ggC	ggT	1	1	B.1.177.4	0.000211
N	179	G179C	GgC	TgT	1	1	B.1.177.63	0.002703
N	179	G179V	gGc	gTc	1	1	B.1.177.65	0.000665
N	179	G179del	GGC	---	1	1	B.1.177.68	0.015152
N	179	G179D	gGc	gAc	1	1	B.1.177.7	0.000165
N	179	G179G	ggC	ggT	1	1	B.1.177.75	0.001041
N	179	G179G	ggC	ggT	1	1	B.1.177.81	0.000189
N	179	G179S	Ggc	Agc	1	1	B.1.177.86	0.000183
N	179	G179G	ggC	ggT	1	1	B.1.177.87	0.000728
N	179	G179D	gGc	gAc	1	1	B.1.177.87	0.000728
N	179	G179S	Ggc	Agc	1	1	B.1.189	0.004292
N	179	G179del	GGC	---	1	1	B.1.2	0.000009
N	179	G179V	gGc	gTc	1	1	B.1.232	0.000537
N	179	G179C	Ggc	Tgc	1	1	B.1.236	0.002053
N	179	G179V	gGc	gTc	1	1	B.1.240	0.000216
N	179	G179C	Ggc	Tgc	1	1	B.1.240	0.000216
N	179	G179S	Ggc	Agc	1	1	B.1.243	0.00007
N	179	G179S	Ggc	Agc	1	1	B.1.258	0.000067
N	179	G179S	Ggc	Agc	1	1	B.1.311	0.000275
N	179	G179D	gGc	gAc	1	1	B.1.311	0.000275
N	179	G179G	ggC	ggT	1	1	B.1.320	0.001245
N	179	G179V	gGc	gTc	1	1	B.1.329	0.000608
N	179	G179V	gGc	gTc	1	1	B.1.349	0.000715
N	179	G179D	gGc	gAc	1	1	B.1.349	0.000715
N	179	G179V	gGc	gTc	1	1	B.1.350	0.002933
N	179	G179del	GGC	---	1	1	B.1.351	0.00003
N	179	G179C	Ggc	Tgc	1	1	B.1.36	0.000146
N	179	G179S	Ggc	Agc	1	1	B.1.36.17	0.000494
N	179	G179V	gGc	gTc	1	1	B.1.36.17	0.000494
N	179	G179S	Ggc	Agc	1	1	B.1.36.36	0.000602
N	179	G179del2	GGc	--c	1	1	B.1.369	0.000285
N	179	G179C	Ggc	Tgc	1	1	B.1.369	0.000285
N	179	G179R	Ggc	Cgc	1	1	B.1.37	0.014706
N	179	G179G	ggC	ggT	1	1	B.1.371	0.001122
N	179	G179S	Ggc	Agc	1	1	B.1.399	0.001934
N	179	G179del	GGC	---	1	1	B.1.416.1	0.001563
N	179	G179del	GGC	---	1	1	B.1.427	0.00005
N	179	G179C	Ggc	Tgc	1	1	B.1.428	0.00102
N	179	G179F	GGc	TTc	1	1	B.1.429	0.000024
N	179	G179V	gGc	gTc	1	1	B.1.429	0.000024
N	179	G179C	Ggc	Tgc	1	1	B.1.436	0.001029
N	179	G179V	gGc	gTc	1	1	B.1.443	0.004673
N	179	G179del	GGC	---	1	1	B.1.465	0.003802
N	179	G179S	Ggc	Agc	1	1	B.1.466.2	0.000391
N	179	G179V	gGc	gTc	1	1	B.1.466.2	0.000391
N	179	G179S	Ggc	Agc	1	1	B.1.474	0.001901
N	179	G179V	gGc	gTc	1	1	B.1.474	0.001901
N	179	G179G	ggC	ggT	1	1	B.1.509	0.000866
N	179	G179V	gGc	gTc	1	1	B.1.521	0.004975
N	179	G179S	Ggc	Agc	1	1	B.1.523	0.002451
N	179	G179del	GGC	---	1	1	B.1.525	0.000113
N	179	G179G	ggC	ggT	1	1	B.1.526	0.000024
N	179	G179del	GGC	---	1	1	B.1.560	0.00463
N	179	G179C	Ggc	Tgc	1	1	B.1.561	0.000397
N	179	G179G	ggC	ggT	1	1	B.1.568	0.001111
N	179	G179V	gGc	gTc	1	1	B.1.571	0.009709
N	179	G179S	Ggc	Agc	1	1	B.1.575	0.000303
N	179	G179del	GGC	---	1	1	B.1.576	0.000907
N	179	G179C	Ggc	Tgc	1	1	B.1.578	0.017857
N	179	G179C	Ggc	Tgc	1	1	B.1.596	0.000087
N	179	G179V	gGc	gTc	1	1	B.1.596	0.000087
N	179	G179del	GGC	---	1	1	B.1.596	0.000087
N	179	G179del	GGC	---	1	1	B.1.617.1	0.000129
N	179	G179S	Ggc	Agc	1	1	B.1.617.1	0.000129
N	179	G179del	GGC	---	1	1	B.1.617.2	0.000004
N	179	G179G	ggC	ggT	1	1	B.1.618	0.004032
N	179	G179G	ggC	ggA	1	1	B.1.619	0.000871
N	179	G179C	Ggc	Tgc	1	1	B.1.621	0.000089
N	179	G179V	gGc	gTc	1	1	B.1.623	0.000536
N	179	G179V	gGc	gTc	1	1	B.1.637	0.000073
N	179	G179S	Ggc	Agc	1	1	B.1.639	0.021739
N	179	G179V	gGc	gTc	1	1	B.1.69	0.035714
N	179	G179G	ggC	ggT	1	1	B.40	0.000364
N	179	G179S	Ggc	Agc	1	1	B.50	0.111111
N	179	G179C	Ggc	Tgc	1	1	B.6	0.00091
N	179	G179G	ggC	ggT	1	1	C.1.2	0.004255
N	179	G179R	GgC	AgA	1	1	C.35	0.000774
N	179	G179V	gGc	gTc	1	1	C.37	0.000116
N	179	G179G	ggC	ggT	1	1	C.37	0.000116
N	179	G179C	Ggc	Tgc	1	1	D.2	0.000075
N	179	G179G	ggC	ggT	1	1	N.6	0.007092
N	179	G179del	GGC	---	1	1	P.1	0.000016
N	179	G179D	gGc	gAc	1	1	P.1.1	0.000318
N	179	G179C	Ggc	Tgc	1	1	P.1.12	0.000484
N	179	G179G	ggC	ggT	1	1	P.1.12	0.000484
N	179	G179G	ggC	ggT	1	1	P.1.13	0.000898
N	179	G179D	gGc	gAc	1	1	P.1.13	0.000898
N	179	G179C	Ggc	Tgc	1	1	P.1.15	0.000232
N	179	G179del	GGC	---	1	1	P.1.15	0.000232
N	179	G179S	Ggc	Agc	1	1	P.1.17	0.000162
N	179	G179D	gGc	gAc	1	1	Q.1	0.000126
N	179	G179S	Ggc	Agc	1	1	Q.1	0.000126

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.