CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 175 & Codon = ggA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	175	G175G		syn	ggG	ggA	4326	1413	0.32663	28796-28798

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	175	G175G	ggG	ggA	1413	4326	All	0.00027
N	175	G175G	ggG	ggA	1	2170	AY.5	0.000021
N	175	G175G	ggG	ggA	744	818	B.1.1.7	0.000666
N	175	G175G	ggG	ggA	132	188	AY.4	0.000205
N	175	G175G	ggG	ggA	27	98	B.1.617.2	0.000102
N	175	G175G	ggG	ggA	52	60	AY.103	0.000323
N	175	G175G	ggG	ggA	1	60	AY.29	0.000016
N	175	G175G	ggG	ggA	58	58	B.1.258.20	0.920635
N	175	G175G	ggG	ggA	52	52	B.1.599	0.189781
N	175	G175G	ggG	ggA	6	49	AY.46	0.000624
N	175	G175G	ggG	ggA	13	45	B.1	0.000119
N	175	G175G	ggG	ggA	41	44	AY.26	0.001161
N	175	G175G	ggG	ggA	27	41	AY.44	0.000164
N	175	G175G	ggG	ggA	10	37	B.1.2	0.000088
N	175	G175G	ggG	ggA	23	29	AY.25	0.000138
N	175	G175G	ggG	ggA	21	29	AY.3	0.000209
N	175	G175G	ggG	ggA	9	21	B.1.427	0.000454
N	175	G175G	ggG	ggA	7	20	AY.43	0.000031
N	175	G175G	ggG	ggA	7	20	B.1.177	0.000092
N	175	G175G	ggG	ggA	11	19	AY.47	0.000342
N	175	G175G	ggG	ggA	9	16	AY.102	0.000239
N	175	G175G	ggG	ggA	13	16	P.1	0.000205
N	175	G175G	ggG	ggA	10	11	B.1.351	0.000297
N	175	G175G	ggG	ggA	1	9	AY.42	0.00004
N	175	G175G	ggG	ggA	8	9	B.1.1	0.000145
N	175	G175G	ggG	ggA	7	9	B.1.429	0.000165
N	175	G175G	ggG	ggA	8	8	B.1.258.17	0.000832
N	175	G175G	ggG	ggA	7	7	AY.39.1	0.000277
N	175	G175G	ggG	ggA	7	7	B.1.1.414	1
N	175	G175G	ggG	ggA	5	6	B.1.160	0.000156
N	175	G175G	ggG	ggA	6	6	B.1.577	0.004124
N	175	G175G	ggG	ggA	2	5	AY.119	0.000071
N	175	G175G	ggG	ggA	4	5	AY.20	0.000155
N	175	G175G	ggG	ggA	2	5	AY.39	0.000049
N	175	G175G	ggG	ggA	4	5	B.1.526	0.000094
N	175	G175G	ggG	ggA	3	5	C.37	0.000348
N	175	G175G	ggG	ggA	4	4	AY.48	0.00186
N	175	G175G	ggG	ggA	4	4	AY.75	0.000224
N	175	G175G	ggG	ggA	4	4	B.1.36.31	0.007005
N	175	G175G	ggG	ggA	4	4	B.1.400	0.001716
N	175	G175G	ggG	ggA	3	4	B.1.621	0.000266
N	175	G175G	ggG	ggA	2	3	AY.117	0.000169
N	175	G175G	ggG	ggA	3	3	AY.34	0.000291
N	175	G175G	ggG	ggA	1	3	AY.4.2	0.000022
N	175	G175G	ggG	ggA	3	3	B.1.1.337	0.010791
N	175	G175G	ggG	ggA	1	3	B.1.221	0.000071
N	175	G175G	ggG	ggA	3	3	C.35	0.002322
N	175	G175G	ggG	ggA	3	3	P.2	0.00056
N	175	G175G	ggG	ggA	2	2	AY.113	0.000285
N	175	G175G	ggG	ggA	2	2	B.1.1.48	0.005747
N	175	G175G	ggG	ggA	2	2	B.1.36	0.000292
N	175	G175G	ggG	ggA	1	2	D.2	0.000075
N	175	G175G	ggG	ggA	1	1	A.2.5	0.000499
N	175	G175G	ggG	ggA	1	1	AY.100	0.000046
N	175	G175G	ggG	ggA	1	1	AY.46.4	0.000165
N	175	G175G	ggG	ggA	1	1	AY.46.5	0.000198
N	175	G175G	ggG	ggA	1	1	AY.59	0.00053
N	175	G175G	ggG	ggA	1	1	AY.6	0.000041
N	175	G175G	ggG	ggA	1	1	AY.61	0.000105
N	175	G175G	ggG	ggA	1	1	AY.67	0.000464
N	175	G175G	ggG	ggA	1	1	AY.70	0.000209
N	175	G175G	ggG	ggA	1	1	AY.99.1	0.001553
N	175	G175G	ggG	ggA	1	1	AY.99.2	0.000092
N	175	G175G	ggG	ggA	1	1	B.1.1.214	0.000055
N	175	G175G	ggG	ggA	1	1	B.1.1.222	0.000204
N	175	G175G	ggG	ggA	1	1	B.1.1.263	0.001558
N	175	G175G	ggG	ggA	1	1	B.1.1.28	0.000311
N	175	G175G	ggG	ggA	1	1	B.1.1.311	0.000358
N	175	G175G	ggG	ggA	1	1	B.1.1.519	0.00004
N	175	G175G	ggG	ggA	1	1	B.1.162	0.005025
N	175	G175G	ggG	ggA	1	1	B.1.235	0.002519
N	175	G175G	ggG	ggA	1	1	B.1.239	0.001221
N	175	G175G	ggG	ggA	1	1	B.1.240	0.000216
N	175	G175G	ggG	ggA	1	1	B.1.258	0.000067
N	175	G175G	ggG	ggA	1	1	B.1.356	0.001727
N	175	G175G	ggG	ggA	1	1	B.1.36.29	0.000517
N	175	G175G	ggG	ggA	1	1	B.1.367	0.000792
N	175	G175G	ggG	ggA	1	1	B.1.369	0.000285
N	175	G175G	ggG	ggA	1	1	B.1.438.1	0.000107
N	175	G175G	ggG	ggA	1	1	B.1.509	0.000866
N	175	G175G	ggG	ggA	1	1	B.1.525	0.000113
N	175	G175G	ggG	ggA	1	1	B.1.587	0.001898
N	175	G175G	ggG	ggA	1	1	B.1.620	0.000946
N	175	G175G	ggG	ggA	1	1	B.1.628	0.000352
N	175	G175G	ggG	ggA	1	1	Q.7	0.001111

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.