CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 173 | A173V | nonsyn | gCa | gTa | 3900 | 3896 | 0.998974 | 28790-28792 | |
N | 173 | A173V | nonsyn | gCA | gTT | 3900 | 3 | 0.000769231 | 28790-28792 | |
N | 173 | A173V | nonsyn | gCA | gTG | 3900 | 1 | 0.00025641 | 28790-28792 | |
N | 173 | A173A | syn | gcA | gcT | 3810 | 3343 | 0.877428 | 28790-28792 | |
N | 173 | A173A | syn | gcA | gcG | 3810 | 427 | 0.112073 | 28790-28792 | |
N | 173 | A173A | syn | gcA | gcC | 3810 | 40 | 0.0104987 | 28790-28792 | |
N | 173 | A173S | nonsyn | Gca | Tca | 1090 | 1089 | 0.999083 | 28790-28792 | |
N | 173 | A173S | nonsyn | GcA | TcT | 1090 | 1 | 0.000917431 | 28790-28792 | |
N | 173 | A173T | nonsyn | Gca | Aca | 109 | 108 | 0.990826 | 28790-28792 | |
N | 173 | A173T | nonsyn | GcA | AcT | 109 | 1 | 0.00917431 | 28790-28792 | |
N | 173 | A173del | del | GCA | --- | 58 | 58 | 1 | 28790-28792 | |
N | 173 | A173N | nonsyn | GCA | AAC | 9 | 9 | 1 | 28790-28792 | |
N | 173 | A173del1 | del | gcA | gc- | 9 | 4 | 0.444444 | 28790-28792 | |
N | 173 | A173del1 | del | GcA | -cG | 9 | 2 | 0.222222 | 28790-28792 | |
N | 173 | A173del1 | del | gCA | gT- | 9 | 1 | 0.111111 | 28790-28792 | |
N | 173 | A173del1 | del | GcA | Ac- | 9 | 1 | 0.111111 | 28790-28792 | |
N | 173 | A173del1 | del | gCa | g-a | 9 | 1 | 0.111111 | 28790-28792 | |
N | 173 | A173P | nonsyn | Gca | Cca | 5 | 5 | 1 | 28790-28792 | |
N | 173 | A173E | nonsyn | gCa | gAa | 3 | 3 | 1 | 28790-28792 | |
N | 173 | A173I | nonsyn | GCa | ATa | 2 | 2 | 1 | 28790-28792 | |
N | 173 | A173R | nonsyn | GCa | AGa | 1 | 1 | 1 | 28790-28792 | |
N | 173 | A173K | nonsyn | GCa | AAa | 1 | 1 | 1 | 28790-28792 | |
N | 173 | A173G | nonsyn | gCa | gGa | 1 | 1 | 1 | 28790-28792 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 173 | A173V | gCa | gTa | 3896 | 3900 | All | 0.000745 |
N | 173 | A173V | gCA | gTT | 3 | 3900 | All | 0.000001 |
N | 173 | A173V | gCA | gTG | 1 | 3900 | All | 0 |
N | 173 | A173A | gcA | gcT | 3343 | 3810 | All | 0.000639 |
N | 173 | A173A | gcA | gcG | 427 | 3810 | All | 0.000082 |
N | 173 | A173A | gcA | gcC | 40 | 3810 | All | 0.000008 |
N | 173 | A173V | gCa | gTa | 1852 | 1853 | B.1.1.7 | 0.001658 |
N | 173 | A173V | gCA | gTG | 1 | 1853 | B.1.1.7 | 0.000001 |
N | 173 | A173S | Gca | Tca | 1089 | 1090 | All | 0.000208 |
N | 173 | A173S | GcA | TcT | 1 | 1090 | All | 0 |
N | 173 | A173S | Gca | Tca | 1000 | 1001 | B.1.1.7 | 0.000895 |
N | 173 | A173S | GcA | TcT | 1 | 1001 | B.1.1.7 | 0.000001 |
N | 173 | A173A | gcA | gcT | 934 | 936 | B.1.429 | 0.021976 |
N | 173 | A173A | gcA | gcG | 2 | 936 | B.1.429 | 0.000047 |
N | 173 | A173A | gcA | gcT | 354 | 451 | B.1.1.7 | 0.000317 |
N | 173 | A173A | gcA | gcG | 97 | 451 | B.1.1.7 | 0.000087 |
N | 173 | A173V | gCa | gTa | 438 | 438 | AY.43 | 0.001941 |
N | 173 | A173A | gcA | gcT | 313 | 317 | AY.103 | 0.001943 |
N | 173 | A173A | gcA | gcG | 4 | 317 | AY.103 | 0.000025 |
N | 173 | A173A | gcA | gcT | 171 | 250 | AY.4 | 0.000266 |
N | 173 | A173A | gcA | gcG | 50 | 250 | AY.4 | 0.000078 |
N | 173 | A173A | gcA | gcC | 29 | 250 | AY.4 | 0.000045 |
N | 173 | A173A | gcA | gcT | 167 | 168 | B.1 | 0.00153 |
N | 173 | A173A | gcA | gcG | 1 | 168 | B.1 | 0.000009 |
N | 173 | A173A | gcA | gcT | 149 | 156 | B.1.2 | 0.001312 |
N | 173 | A173A | gcA | gcG | 7 | 156 | B.1.2 | 0.000062 |
N | 173 | A173A | gcA | gcT | 147 | 149 | P.1 | 0.002316 |
N | 173 | A173A | gcA | gcG | 2 | 149 | P.1 | 0.000032 |
N | 173 | A173V | gCa | gTa | 145 | 145 | AY.4 | 0.000226 |
N | 173 | A173A | gcA | gcT | 137 | 137 | B.1.9.4 | 0.840491 |
N | 173 | A173V | gCa | gTa | 122 | 123 | AY.103 | 0.000758 |
N | 173 | A173V | gCA | gTT | 1 | 123 | AY.103 | 0.000006 |
N | 173 | A173T | Gca | Aca | 108 | 109 | All | 0.000021 |
N | 173 | A173T | GcA | AcT | 1 | 109 | All | 0 |
N | 173 | A173V | gCa | gTa | 104 | 104 | AY.32 | 0.055378 |
N | 173 | A173A | gcA | gcT | 87 | 104 | B.1.617.2 | 0.000328 |
N | 173 | A173A | gcA | gcG | 17 | 104 | B.1.617.2 | 0.000064 |
N | 173 | A173V | gCa | gTa | 102 | 102 | C.37 | 0.011838 |
N | 173 | A173V | gCa | gTa | 90 | 90 | B.1.617.2 | 0.000339 |
N | 173 | A173A | gcA | gcT | 76 | 82 | B.1.177 | 0.001001 |
N | 173 | A173A | gcA | gcG | 6 | 82 | B.1.177 | 0.000079 |
N | 173 | A173V | gCa | gTa | 66 | 68 | B.1.177 | 0.000869 |
N | 173 | A173V | gCA | gTT | 2 | 68 | B.1.177 | 0.000026 |
N | 173 | A173A | gcA | gcT | 65 | 67 | AY.39 | 0.001606 |
N | 173 | A173A | gcA | gcG | 2 | 67 | AY.39 | 0.000049 |
N | 173 | A173A | gcA | gcG | 51 | 62 | AY.119 | 0.001801 |
N | 173 | A173A | gcA | gcT | 11 | 62 | AY.119 | 0.000388 |
N | 173 | A173V | gCa | gTa | 61 | 61 | AY.44 | 0.000371 |
N | 173 | A173A | gcA | gcT | 53 | 60 | B.1.1 | 0.000961 |
N | 173 | A173A | gcA | gcG | 7 | 60 | B.1.1 | 0.000127 |
N | 173 | A173del | GCA | --- | 58 | 58 | All | 0.000011 |
N | 173 | A173V | gCa | gTa | 57 | 57 | B.1.427 | 0.002878 |
N | 173 | A173V | gCa | gTa | 55 | 55 | B.1.2 | 0.000484 |
N | 173 | A173A | gcA | gcT | 40 | 50 | AY.44 | 0.000243 |
N | 173 | A173A | gcA | gcG | 10 | 50 | AY.44 | 0.000061 |
N | 173 | A173A | gcA | gcT | 48 | 48 | AY.3 | 0.000477 |
N | 173 | A173V | gCa | gTa | 46 | 46 | AY.25 | 0.000277 |
N | 173 | A173A | gcA | gcT | 37 | 41 | AY.43 | 0.000164 |
N | 173 | A173A | gcA | gcG | 4 | 41 | AY.43 | 0.000018 |
N | 173 | A173A | gcA | gcG | 40 | 40 | B.1.177.32 | 0.053981 |
N | 173 | A173V | gCa | gTa | 31 | 31 | AY.42 | 0.001247 |
N | 173 | A173A | gcA | gcT | 30 | 30 | AY.47 | 0.000933 |
N | 173 | A173V | gCa | gTa | 29 | 29 | B.1.429 | 0.000682 |
N | 173 | A173V | gCa | gTa | 27 | 27 | B.1.1.222 | 0.005508 |
N | 173 | A173A | gcA | gcT | 26 | 26 | B.1.1.328 | 0.440678 |
N | 173 | A173V | gCa | gTa | 25 | 25 | AY.4.2 | 0.000542 |
N | 173 | A173A | gcA | gcG | 22 | 23 | B.1.258 | 0.001464 |
N | 173 | A173A | gcA | gcT | 1 | 23 | B.1.258 | 0.000067 |
N | 173 | A173A | gcA | gcT | 23 | 23 | B.1.258.17 | 0.002391 |
N | 173 | A173A | gcA | gcT | 23 | 23 | B.1.427 | 0.001161 |
N | 173 | A173A | gcA | gcT | 22 | 22 | AY.100 | 0.001012 |
N | 173 | A173V | gCa | gTa | 22 | 22 | AY.39 | 0.000544 |
N | 173 | A173A | gcA | gcT | 22 | 22 | B.1.1.317 | 0.009057 |
N | 173 | A173V | gCa | gTa | 22 | 22 | P.1 | 0.000347 |
N | 173 | A173A | gcA | gcT | 20 | 20 | AY.9.2 | 0.000735 |
N | 173 | A173V | gCa | gTa | 20 | 20 | B.1 | 0.000183 |
N | 173 | A173V | gCa | gTa | 20 | 20 | B.1.1 | 0.000363 |
N | 173 | A173V | gCa | gTa | 19 | 19 | Q.2 | 0.011656 |
N | 173 | A173V | gCa | gTa | 18 | 18 | AY.26 | 0.00051 |
N | 173 | A173V | gCa | gTa | 18 | 18 | AY.3 | 0.000179 |
N | 173 | A173V | gCa | gTa | 18 | 18 | AY.50 | 0.014388 |
N | 173 | A173V | gCa | gTa | 18 | 18 | B.1.243 | 0.001253 |
N | 173 | A173V | gCa | gTa | 18 | 18 | Q.1 | 0.002274 |
N | 173 | A173A | gcA | gcT | 14 | 16 | AY.102 | 0.000371 |
N | 173 | A173A | gcA | gcG | 2 | 16 | AY.102 | 0.000053 |
N | 173 | A173S | Gca | Tca | 16 | 16 | AY.4 | 0.000025 |
N | 173 | A173A | gcA | gcG | 16 | 16 | B.1.554 | 0.070485 |
N | 173 | A173T | Gca | Aca | 15 | 15 | AY.4 | 0.000023 |
N | 173 | A173A | gcA | gcG | 9 | 15 | B | 0.00115 |
N | 173 | A173A | gcA | gcT | 6 | 15 | B | 0.000767 |
N | 173 | A173V | gCa | gTa | 15 | 15 | P.1.14 | 0.000717 |
N | 173 | A173V | gCa | gTa | 14 | 14 | B.1.177.57 | 0.003934 |
N | 173 | A173A | gcA | gcG | 9 | 14 | B.1.637 | 0.000658 |
N | 173 | A173A | gcA | gcT | 5 | 14 | B.1.637 | 0.000365 |
N | 173 | A173V | gCa | gTa | 14 | 14 | R.1 | 0.00126 |
N | 173 | A173V | gCa | gTa | 13 | 13 | AY.100 | 0.000598 |
N | 173 | A173A | gcA | gcT | 13 | 13 | AY.110 | 0.001465 |
N | 173 | A173V | gCa | gTa | 13 | 13 | AY.113 | 0.001851 |
N | 173 | A173A | gcA | gcT | 9 | 13 | AY.25 | 0.000054 |
N | 173 | A173A | gcA | gcG | 4 | 13 | AY.25 | 0.000024 |
N | 173 | A173V | gCa | gTa | 13 | 13 | AY.61 | 0.001362 |
N | 173 | A173A | gcA | gcT | 13 | 13 | AY.98.1 | 0.00063 |
N | 173 | A173T | Gca | Aca | 13 | 13 | B.1.1.7 | 0.000012 |
N | 173 | A173V | gCa | gTa | 13 | 13 | B.1.351 | 0.000386 |
N | 173 | A173A | gcA | gcT | 12 | 12 | AY.23 | 0.000837 |
N | 173 | A173A | gcA | gcT | 12 | 12 | AY.5 | 0.000248 |
N | 173 | A173V | gCa | gTa | 12 | 12 | B.1.221 | 0.000852 |
N | 173 | A173A | gcA | gcG | 8 | 12 | B.1.596 | 0.000697 |
N | 173 | A173A | gcA | gcT | 4 | 12 | B.1.596 | 0.000349 |
N | 173 | A173V | gCa | gTa | 11 | 11 | AY.29 | 0.000174 |
N | 173 | A173T | Gca | Aca | 11 | 11 | AY.43 | 0.000049 |
N | 173 | A173V | gCa | gTa | 11 | 11 | AY.95 | 0.008371 |
N | 173 | A173A | gcA | gcT | 11 | 11 | P.1.12 | 0.005324 |
N | 173 | A173A | gcA | gcT | 10 | 10 | AY.30 | 0.003957 |
N | 173 | A173del | GCA | --- | 10 | 10 | B.1 | 0.000092 |
N | 173 | A173V | gCa | gTa | 10 | 10 | B.1.1.519 | 0.000397 |
N | 173 | A173del | GCA | --- | 10 | 10 | B.1.1.7 | 0.000009 |
N | 173 | A173A | gcA | gcT | 7 | 10 | B.1.351 | 0.000208 |
N | 173 | A173A | gcA | gcG | 2 | 10 | B.1.351 | 0.000059 |
N | 173 | A173A | gcA | gcC | 1 | 10 | B.1.351 | 0.00003 |
N | 173 | A173A | gcA | gcG | 9 | 10 | B.1.617.1 | 0.001161 |
N | 173 | A173A | gcA | gcT | 1 | 10 | B.1.617.1 | 0.000129 |
N | 173 | A173N | GCA | AAC | 9 | 9 | All | 0.000002 |
N | 173 | A173del1 | gcA | gc- | 4 | 9 | All | 0.000001 |
N | 173 | A173del1 | GcA | -cG | 2 | 9 | All | 0 |
N | 173 | A173del1 | GcA | Ac- | 1 | 9 | All | 0 |
N | 173 | A173del1 | gCa | g-a | 1 | 9 | All | 0 |
N | 173 | A173del1 | gCA | gT- | 1 | 9 | All | 0 |
N | 173 | A173V | gCa | gTa | 9 | 9 | AY.47 | 0.00028 |
N | 173 | A173S | Gca | Tca | 9 | 9 | B.1.160 | 0.000281 |
N | 173 | A173T | Gca | Aca | 9 | 9 | B.1.177.21 | 0.000688 |
N | 173 | A173A | gcA | gcT | 9 | 9 | B.1.525 | 0.001018 |
N | 173 | A173V | gCa | gTa | 9 | 9 | D.2 | 0.000675 |
N | 173 | A173V | gCa | gTa | 8 | 8 | AY.20 | 0.000311 |
N | 173 | A173S | Gca | Tca | 8 | 8 | AY.43 | 0.000035 |
N | 173 | A173V | gCa | gTa | 8 | 8 | AY.5 | 0.000165 |
N | 173 | A173A | gcA | gcT | 8 | 8 | B.1.1.318 | 0.002414 |
N | 173 | A173A | gcA | gcT | 8 | 8 | B.1.621 | 0.000708 |
N | 173 | A173A | gcA | gcT | 5 | 8 | D.2 | 0.000375 |
N | 173 | A173A | gcA | gcG | 3 | 8 | D.2 | 0.000225 |
N | 173 | A173V | gCa | gTa | 7 | 7 | AY.102 | 0.000186 |
N | 173 | A173A | gcA | gcT | 7 | 7 | AY.20 | 0.000272 |
N | 173 | A173A | gcA | gcT | 5 | 7 | AY.29 | 0.000079 |
N | 173 | A173A | gcA | gcG | 2 | 7 | AY.29 | 0.000032 |
N | 173 | A173A | gcA | gcT | 7 | 7 | AY.39.1 | 0.000277 |
N | 173 | A173A | gcA | gcT | 7 | 7 | AY.42 | 0.000282 |
N | 173 | A173V | gCa | gTa | 7 | 7 | AY.46.3 | 0.006536 |
N | 173 | A173V | gCa | gTa | 7 | 7 | AY.81 | 0.013944 |
N | 173 | A173A | gcA | gcT | 7 | 7 | B.1.111 | 0.008226 |
N | 173 | A173V | gCa | gTa | 7 | 7 | B.1.524 | 0.009845 |
N | 173 | A173V | gCa | gTa | 7 | 7 | B.1.526 | 0.000165 |
N | 173 | A173V | gCa | gTa | 6 | 6 | AY.119 | 0.000212 |
N | 173 | A173A | gcA | gcT | 6 | 6 | AY.4.2 | 0.00013 |
N | 173 | A173A | gcA | gcT | 6 | 6 | AY.69 | 0.00112 |
N | 173 | A173A | gcA | gcG | 4 | 6 | AY.9 | 0.00027 |
N | 173 | A173A | gcA | gcT | 2 | 6 | AY.9 | 0.000135 |
N | 173 | A173A | gcA | gcG | 4 | 6 | B.1.177.73 | 0.002265 |
N | 173 | A173A | gcA | gcT | 2 | 6 | B.1.177.73 | 0.001133 |
N | 173 | A173A | gcA | gcT | 6 | 6 | P.1.14 | 0.000287 |
N | 173 | A173A | gcA | gcT | 6 | 6 | P.1.15 | 0.001394 |
N | 173 | A173P | Gca | Cca | 5 | 5 | All | 0.000001 |
N | 173 | A173S | Gca | Tca | 5 | 5 | AY.102 | 0.000133 |
N | 173 | A173S | Gca | Tca | 5 | 5 | AY.25 | 0.00003 |
N | 173 | A173V | gCa | gTa | 5 | 5 | AY.39.1 | 0.000198 |
N | 173 | A173V | gCa | gTa | 5 | 5 | AY.4.2.1 | 0.000745 |
N | 173 | A173V | gCa | gTa | 5 | 5 | AY.62 | 0.002179 |
N | 173 | A173A | gcA | gcC | 5 | 5 | AY.94 | 0.002213 |
N | 173 | A173A | gcA | gcT | 5 | 5 | B.1.1.335 | 0.064935 |
N | 173 | A173V | gCa | gTa | 5 | 5 | B.1.234 | 0.00066 |
N | 173 | A173V | gCa | gTa | 5 | 5 | B.1.258 | 0.000333 |
N | 173 | A173A | gcA | gcT | 3 | 5 | B.1.36 | 0.000438 |
N | 173 | A173A | gcA | gcG | 2 | 5 | B.1.36 | 0.000292 |
N | 173 | A173A | gcA | gcT | 5 | 5 | B.1.36.27 | 0.003817 |
N | 173 | A173A | gcA | gcT | 4 | 5 | B.1.526 | 0.000094 |
N | 173 | A173A | gcA | gcG | 1 | 5 | B.1.526 | 0.000024 |
N | 173 | A173A | gcA | gcT | 5 | 5 | B.1.9 | 0.030864 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AD.2 | 0.000876 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.106 | 0.00134 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.111 | 0.000733 |
N | 173 | A173A | gcA | gcT | 4 | 4 | AY.118 | 0.000251 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.16.1 | 0.00188 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.23 | 0.000279 |
N | 173 | A173T | Gca | Aca | 4 | 4 | AY.25 | 0.000024 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.27 | 0.000259 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.29.1 | 0.000882 |
N | 173 | A173S | Gca | Tca | 4 | 4 | AY.3 | 0.00004 |
N | 173 | A173A | gcA | gcT | 3 | 4 | AY.33 | 0.0002 |
N | 173 | A173A | gcA | gcG | 1 | 4 | AY.33 | 0.000067 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.45 | 0.000487 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.46 | 0.000416 |
N | 173 | A173A | gcA | gcT | 3 | 4 | AY.49 | 0.009585 |
N | 173 | A173A | gcA | gcG | 1 | 4 | AY.49 | 0.003195 |
N | 173 | A173A | gcA | gcT | 4 | 4 | AY.70 | 0.000834 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.98 | 0.000316 |
N | 173 | A173V | gCa | gTa | 4 | 4 | AY.99.2 | 0.000369 |
N | 173 | A173V | gCa | gTa | 4 | 4 | B.1.1.28 | 0.001245 |
N | 173 | A173V | gCa | gTa | 4 | 4 | B.1.1.318 | 0.001207 |
N | 173 | A173del1 | gcA | gc- | 3 | 4 | B.1.1.7 | 0.000003 |
N | 173 | A173del1 | gCa | g-a | 1 | 4 | B.1.1.7 | 0.000001 |
N | 173 | A173V | gCa | gTa | 4 | 4 | B.1.177.17 | 0.003284 |
N | 173 | A173V | gCa | gTa | 4 | 4 | B.1.311 | 0.001098 |
N | 173 | A173V | gCa | gTa | 4 | 4 | B.1.319 | 0.012195 |
N | 173 | A173A | gcA | gcT | 4 | 4 | B.1.369 | 0.001141 |
N | 173 | A173A | gcA | gcT | 4 | 4 | B.1.425 | 0.011976 |
N | 173 | A173S | Gca | Tca | 4 | 4 | B.1.617.2 | 0.000015 |
N | 173 | A173A | gcA | gcT | 4 | 4 | B.1.9.5 | 0.022727 |
N | 173 | A173E | gCa | gAa | 3 | 3 | All | 0.000001 |
N | 173 | A173T | Gca | Aca | 3 | 3 | AY.103 | 0.000019 |
N | 173 | A173V | gCa | gTa | 3 | 3 | AY.105 | 0.001929 |
N | 173 | A173A | gcA | gcT | 3 | 3 | AY.113 | 0.000427 |
N | 173 | A173T | Gca | Aca | 3 | 3 | AY.118 | 0.000188 |
N | 173 | A173V | gCa | gTa | 3 | 3 | AY.120 | 0.000112 |
N | 173 | A173S | Gca | Tca | 3 | 3 | AY.29 | 0.000047 |
N | 173 | A173V | gCa | gTa | 3 | 3 | AY.3.1 | 0.000256 |
N | 173 | A173V | gCa | gTa | 3 | 3 | AY.34 | 0.000291 |
N | 173 | A173del | GCA | --- | 3 | 3 | AY.43 | 0.000013 |
N | 173 | A173T | Gca | Aca | 3 | 3 | AY.44 | 0.000018 |
N | 173 | A173T | Gca | Aca | 3 | 3 | AY.47 | 0.000093 |
N | 173 | A173T | Gca | Aca | 3 | 3 | AY.5 | 0.000062 |
N | 173 | A173S | Gca | Tca | 3 | 3 | AY.5 | 0.000062 |
N | 173 | A173V | gCa | gTa | 3 | 3 | AY.67 | 0.001393 |
N | 173 | A173A | gcA | gcT | 3 | 3 | AY.7.1 | 0.000338 |
N | 173 | A173V | gCa | gTa | 3 | 3 | AY.7.1 | 0.000338 |
N | 173 | A173A | gcA | gcT | 3 | 3 | AY.75 | 0.000168 |
N | 173 | A173V | gCa | gTa | 3 | 3 | AY.75 | 0.000168 |
N | 173 | A173A | gcA | gcT | 3 | 3 | AY.99.2 | 0.000276 |
N | 173 | A173T | Gca | Aca | 3 | 3 | B.1 | 0.000027 |
N | 173 | A173A | gcA | gcT | 3 | 3 | B.1.1.1 | 0.00098 |
N | 173 | A173A | gcA | gcT | 3 | 3 | B.1.1.101 | 0.03 |
N | 173 | A173V | gCa | gTa | 3 | 3 | B.1.1.413 | 0.02069 |
N | 173 | A173A | gcA | gcT | 3 | 3 | B.1.1.50 | 0.002037 |
N | 173 | A173V | gCa | gTa | 3 | 3 | B.1.111 | 0.003525 |
N | 173 | A173A | gcA | gcT | 3 | 3 | B.1.160 | 0.000094 |
N | 173 | A173S | Gca | Tca | 3 | 3 | B.1.177 | 0.00004 |
N | 173 | A173T | Gca | Aca | 3 | 3 | B.1.177 | 0.00004 |
N | 173 | A173A | gcA | gcG | 3 | 3 | B.1.177.58 | 0.003995 |
N | 173 | A173T | Gca | Aca | 3 | 3 | B.1.2 | 0.000026 |
N | 173 | A173V | gCa | gTa | 3 | 3 | B.1.369 | 0.000856 |
N | 173 | A173A | gcA | gcT | 3 | 3 | B.1.426 | 0.003027 |
N | 173 | A173V | gCa | gTa | 3 | 3 | B.1.525 | 0.000339 |
N | 173 | A173V | gCa | gTa | 3 | 3 | B.1.617.1 | 0.000387 |
N | 173 | A173T | Gca | Aca | 3 | 3 | B.1.617.2 | 0.000011 |
N | 173 | A173del | GCA | --- | 3 | 3 | B.1.617.2 | 0.000011 |
N | 173 | A173S | Gca | Tca | 3 | 3 | B.1.637 | 0.000219 |
N | 173 | A173V | gCa | gTa | 3 | 3 | P.1.15 | 0.000697 |
N | 173 | A173V | gCa | gTa | 3 | 3 | Q.8 | 0.000495 |
N | 173 | A173A | gcA | gcT | 2 | 2 | A | 0.000774 |
N | 173 | A173I | GCa | ATa | 2 | 2 | All | 0 |
N | 173 | A173T | Gca | Aca | 2 | 2 | AY.100 | 0.000092 |
N | 173 | A173S | Gca | Tca | 2 | 2 | AY.103 | 0.000012 |
N | 173 | A173T | Gca | Aca | 2 | 2 | AY.120 | 0.000074 |
N | 173 | A173A | gcA | gcT | 2 | 2 | AY.121 | 0.000271 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.13 | 0.000322 |
N | 173 | A173A | gcA | gcT | 2 | 2 | AY.2 | 0.000712 |
N | 173 | A173S | Gca | Tca | 2 | 2 | AY.23 | 0.000139 |
N | 173 | A173T | Gca | Aca | 2 | 2 | AY.3 | 0.00002 |
N | 173 | A173A | gcA | gcG | 1 | 2 | AY.4.2.1 | 0.000149 |
N | 173 | A173A | gcA | gcC | 1 | 2 | AY.4.2.1 | 0.000149 |
N | 173 | A173del | GCA | --- | 2 | 2 | AY.40 | 0.001929 |
N | 173 | A173S | Gca | Tca | 2 | 2 | AY.44 | 0.000012 |
N | 173 | A173del | GCA | --- | 2 | 2 | AY.5 | 0.000041 |
N | 173 | A173del | GCA | --- | 2 | 2 | AY.50 | 0.001599 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.54 | 0.000191 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.6 | 0.000082 |
N | 173 | A173A | gcA | gcT | 2 | 2 | AY.6 | 0.000082 |
N | 173 | A173A | gcA | gcT | 2 | 2 | AY.61 | 0.00021 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.65 | 0.001066 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.69 | 0.000373 |
N | 173 | A173T | Gca | Aca | 2 | 2 | AY.75 | 0.000112 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.88 | 0.001768 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.9 | 0.000135 |
N | 173 | A173A | gcA | gcG | 1 | 2 | AY.9.1 | 0.000084 |
N | 173 | A173A | gcA | gcT | 1 | 2 | AY.9.1 | 0.000084 |
N | 173 | A173N | GCA | AAC | 2 | 2 | AY.9.2 | 0.000073 |
N | 173 | A173A | gcA | gcG | 1 | 2 | AY.92 | 0.000287 |
N | 173 | A173A | gcA | gcT | 1 | 2 | AY.92 | 0.000287 |
N | 173 | A173V | gCa | gTa | 2 | 2 | AY.93 | 0.000546 |
N | 173 | A173S | Gca | Tca | 2 | 2 | AY.98 | 0.000158 |
N | 173 | A173E | gCa | gAa | 2 | 2 | B.1 | 0.000018 |
N | 173 | A173S | Gca | Tca | 2 | 2 | B.1 | 0.000018 |
N | 173 | A173del | GCA | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 173 | A173A | gcA | gcG | 2 | 2 | B.1.1.141 | 0.004024 |
N | 173 | A173V | gCa | gTa | 2 | 2 | B.1.1.214 | 0.000111 |
N | 173 | A173del | GCA | --- | 2 | 2 | B.1.1.28 | 0.000622 |
N | 173 | A173V | gCa | gTa | 2 | 2 | B.1.1.316 | 0.00185 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.1.373 | 0.047619 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.1.519 | 0.000079 |
N | 173 | A173V | gCa | gTa | 2 | 2 | B.1.1.523 | 0.003125 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.146 | 0.008475 |
N | 173 | A173del | GCA | --- | 2 | 2 | B.1.177 | 0.000026 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.177.15 | 0.001262 |
N | 173 | A173T | Gca | Aca | 2 | 2 | B.1.177.20 | 0.003035 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.177.4 | 0.000422 |
N | 173 | A173V | gCa | gTa | 2 | 2 | B.1.177.44 | 0.001038 |
N | 173 | A173V | gCa | gTa | 2 | 2 | B.1.177.60 | 0.000437 |
N | 173 | A173A | gcA | gcG | 1 | 2 | B.1.177.60 | 0.000218 |
N | 173 | A173A | gcA | gcT | 1 | 2 | B.1.177.60 | 0.000218 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.177.75 | 0.002081 |
N | 173 | A173A | gcA | gcG | 1 | 2 | B.1.221 | 0.000071 |
N | 173 | A173A | gcA | gcT | 1 | 2 | B.1.221 | 0.000071 |
N | 173 | A173V | gCa | gTa | 2 | 2 | B.1.232 | 0.001075 |
N | 173 | A173A | gcA | gcG | 1 | 2 | B.1.234 | 0.000132 |
N | 173 | A173A | gcA | gcT | 1 | 2 | B.1.234 | 0.000132 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.324 | 0.00321 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.36.26 | 0.005714 |
N | 173 | A173A | gcA | gcT | 2 | 2 | B.1.389 | 0.002004 |
N | 173 | A173A | gcA | gcG | 2 | 2 | B.1.466.2 | 0.000782 |
N | 173 | A173A | gcA | gcC | 2 | 2 | B.1.497 | 0.00063 |
N | 173 | A173del1 | GcA | -cG | 2 | 2 | B.1.525 | 0.000226 |
N | 173 | A173A | gcA | gcT | 1 | 2 | B.1.595 | 0.000261 |
N | 173 | A173A | gcA | gcG | 1 | 2 | B.1.595 | 0.000261 |
N | 173 | A173V | gCa | gTa | 2 | 2 | B.23 | 0.005848 |
N | 173 | A173A | gcA | gcT | 2 | 2 | C.36 | 0.001821 |
N | 173 | A173del | GCA | --- | 2 | 2 | C.37.1 | 0.005236 |
N | 173 | A173V | gCa | gTa | 2 | 2 | P.1.16 | 0.000748 |
N | 173 | A173A | gcA | gcT | 2 | 2 | P.1.17 | 0.000324 |
N | 173 | A173A | gcA | gcT | 2 | 2 | P.2 | 0.000373 |
N | 173 | A173S | Gca | Tca | 2 | 2 | Q.8 | 0.00033 |
N | 173 | A173A | gcA | gcT | 2 | 2 | Q.8 | 0.00033 |
N | 173 | A173V | gCa | gTa | 1 | 1 | A | 0.000387 |
N | 173 | A173A | gcA | gcT | 1 | 1 | A.2.4 | 0.003367 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AE.8 | 0.000489 |
N | 173 | A173R | GCa | AGa | 1 | 1 | All | 0 |
N | 173 | A173K | GCa | AAa | 1 | 1 | All | 0 |
N | 173 | A173G | gCa | gGa | 1 | 1 | All | 0 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AP.1 | 0.001502 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AU.3 | 0.00211 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.101 | 0.00049 |
N | 173 | A173del | GCA | --- | 1 | 1 | AY.102 | 0.000027 |
N | 173 | A173E | gCa | gAa | 1 | 1 | AY.103 | 0.000006 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.107 | 0.000466 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.108 | 0.001103 |
N | 173 | A173N | GCA | AAC | 1 | 1 | AY.110 | 0.000113 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.110 | 0.000113 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.111 | 0.000183 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.113 | 0.000142 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.114 | 0.000231 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.116 | 0.000287 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.116 | 0.000287 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.116.1 | 0.000311 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.116.1 | 0.000311 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.117 | 0.000085 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.117 | 0.000085 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.119 | 0.000035 |
N | 173 | A173S | Gca | Tca | 1 | 1 | AY.120 | 0.000037 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.120 | 0.000037 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.120.1 | 0.000321 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.13 | 0.000161 |
N | 173 | A173del1 | gcA | gc- | 1 | 1 | AY.13 | 0.000161 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.14 | 0.000088 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.16 | 0.00038 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.16 | 0.00038 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.16 | 0.00038 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.16.1 | 0.00047 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.23.1 | 0.000417 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.24 | 0.000431 |
N | 173 | A173del | GCA | --- | 1 | 1 | AY.25 | 0.000006 |
N | 173 | A173N | GCA | AAC | 1 | 1 | AY.3 | 0.00001 |
N | 173 | A173S | Gca | Tca | 1 | 1 | AY.3.1 | 0.000085 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.3.1 | 0.000085 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.30 | 0.000396 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.33 | 0.000067 |
N | 173 | A173S | Gca | Tca | 1 | 1 | AY.34 | 0.000097 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.34 | 0.000097 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.34.1 | 0.00051 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.35 | 0.000233 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.37 | 0.000316 |
N | 173 | A173A | gcA | gcG | 1 | 1 | AY.38 | 0.000499 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.39 | 0.000025 |
N | 173 | A173del1 | GcA | Ac- | 1 | 1 | AY.4 | 0.000002 |
N | 173 | A173P | Gca | Cca | 1 | 1 | AY.4 | 0.000002 |
N | 173 | A173S | Gca | Tca | 1 | 1 | AY.4.2 | 0.000022 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.4.5 | 0.000107 |
N | 173 | A173N | GCA | AAC | 1 | 1 | AY.42 | 0.00004 |
N | 173 | A173P | Gca | Cca | 1 | 1 | AY.44 | 0.000006 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.45 | 0.000122 |
N | 173 | A173S | Gca | Tca | 1 | 1 | AY.46 | 0.000104 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.46.2 | 0.000635 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.46.5 | 0.000198 |
N | 173 | A173S | Gca | Tca | 1 | 1 | AY.46.6 | 0.000072 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.46.6 | 0.000072 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.46.6 | 0.000072 |
N | 173 | A173A | gcA | gcG | 1 | 1 | AY.5.2 | 0.002463 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.5.3 | 0.000337 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.51 | 0.000909 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.52 | 0.000814 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.53 | 0.000288 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.54 | 0.000095 |
N | 173 | A173A | gcA | gcG | 1 | 1 | AY.55 | 0.000917 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.59 | 0.00053 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.6 | 0.000041 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.60 | 0.000938 |
N | 173 | A173K | GCa | AAa | 1 | 1 | AY.62 | 0.000436 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.7 | 0.000196 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.7.2 | 0.000559 |
N | 173 | A173A | gcA | gcG | 1 | 1 | AY.74 | 0.000116 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.74 | 0.000116 |
N | 173 | A173N | GCA | AAC | 1 | 1 | AY.75 | 0.000056 |
N | 173 | A173del | GCA | --- | 1 | 1 | AY.75 | 0.000056 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.75.1 | 0.00018 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.77 | 0.001127 |
N | 173 | A173A | gcA | gcG | 1 | 1 | AY.79 | 0.001211 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.79 | 0.001211 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.84 | 0.000437 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.87 | 0.000833 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.9.1 | 0.000084 |
N | 173 | A173T | Gca | Aca | 1 | 1 | AY.9.2 | 0.000037 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.9.2.1 | 0.001976 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.92 | 0.000287 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.93 | 0.000273 |
N | 173 | A173del | GCA | --- | 1 | 1 | AY.95 | 0.000761 |
N | 173 | A173A | gcA | gcT | 1 | 1 | AY.98 | 0.000079 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AY.99.1 | 0.001553 |
N | 173 | A173V | gCa | gTa | 1 | 1 | AZ.3 | 0.00152 |
N | 173 | A173del1 | gCA | gT- | 1 | 1 | B.1 | 0.000009 |
N | 173 | A173N | GCA | AAC | 1 | 1 | B.1 | 0.000009 |
N | 173 | A173S | Gca | Tca | 1 | 1 | B.1.1 | 0.000018 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.135 | 0.004695 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.141 | 0.002012 |
N | 173 | A173S | Gca | Tca | 1 | 1 | B.1.1.171 | 0.003676 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.176 | 0.000439 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.192 | 0.002309 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.214 | 0.000055 |
N | 173 | A173T | Gca | Aca | 1 | 1 | B.1.1.214 | 0.000055 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.216 | 0.00089 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.228 | 0.003049 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.262 | 0.015152 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.277 | 0.000759 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.28 | 0.000311 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.284 | 0.000107 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.294 | 0.001266 |
N | 173 | A173S | Gca | Tca | 1 | 1 | B.1.1.309 | 0.005848 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.315 | 0.008475 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.317 | 0.000412 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.348 | 0.000796 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.354 | 0.004386 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.363 | 0.005988 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.389 | 0.006061 |
N | 173 | A173S | Gca | Tca | 1 | 1 | B.1.1.397 | 0.002252 |
N | 173 | A173A | gcA | gcG | 1 | 1 | B.1.1.409 | 0.002833 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.422 | 0.045455 |
N | 173 | A173T | Gca | Aca | 1 | 1 | B.1.1.432 | 0.001266 |
N | 173 | A173A | gcA | gcG | 1 | 1 | B.1.1.448 | 0.002033 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.507 | 0.008696 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.521 | 0.005348 |
N | 173 | A173T | Gca | Aca | 1 | 1 | B.1.1.526 | 0.003546 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.62 | 0.027027 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.1.63 | 0.000386 |
N | 173 | A173N | GCA | AAC | 1 | 1 | B.1.1.7 | 0.000001 |
N | 173 | A173R | GCa | AGa | 1 | 1 | B.1.1.7 | 0.000001 |
N | 173 | A173I | GCa | ATa | 1 | 1 | B.1.1.7 | 0.000001 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.1.89 | 0.006061 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.128 | 0.000635 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.160 | 0.000031 |
N | 173 | A173S | Gca | Tca | 1 | 1 | B.1.160.13 | 0.027778 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.160.16 | 0.000929 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.177.10 | 0.000878 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.177.12 | 0.000152 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.177.16 | 0.000664 |
N | 173 | A173T | Gca | Aca | 1 | 1 | B.1.177.25 | 0.014925 |
N | 173 | A173S | Gca | Tca | 1 | 1 | B.1.177.32 | 0.00135 |
N | 173 | A173A | gcA | gcC | 1 | 1 | B.1.177.56 | 0.000668 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
N | 173 | A173A | gcA | gcC | 1 | 1 | B.1.177.63 | 0.002703 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.177.65 | 0.000665 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.177.86 | 0.000183 |
N | 173 | A173A | gcA | gcG | 1 | 1 | B.1.189 | 0.004292 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.192 | 0.009259 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 173 | A173G | gCa | gGa | 1 | 1 | B.1.2 | 0.000009 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.214.3 | 0.007143 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.22 | 0.001318 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.221.1 | 0.002907 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.221.4 | 0.004167 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.233 | 0.014085 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.239 | 0.001221 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.240 | 0.000216 |
N | 173 | A173T | Gca | Aca | 1 | 1 | B.1.243 | 0.00007 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.243 | 0.00007 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.258.14 | 0.00098 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.311 | 0.000275 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.320 | 0.001245 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.351 | 0.00003 |
N | 173 | A173S | Gca | Tca | 1 | 1 | B.1.351 | 0.00003 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.351.2 | 0.000303 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.351.5 | 0.0006 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.36 | 0.000146 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.36.10 | 0.004785 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.36.17 | 0.000494 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.36.17 | 0.000494 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.36.29 | 0.000517 |
N | 173 | A173P | Gca | Cca | 1 | 1 | B.1.36.8 | 0.001 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.367 | 0.000792 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.367 | 0.000792 |
N | 173 | A173T | Gca | Aca | 1 | 1 | B.1.369 | 0.000285 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.400 | 0.000429 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.409 | 0.000781 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.416 | 0.001269 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 173 | A173A | gcA | gcG | 1 | 1 | B.1.432 | 0.011236 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.435 | 0.011364 |
N | 173 | A173P | Gca | Cca | 1 | 1 | B.1.453 | 0.003236 |
N | 173 | A173A | gcA | gcG | 1 | 1 | B.1.456 | 0.003268 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.466.2 | 0.000391 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.501 | 0.007353 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.525 | 0.000113 |
N | 173 | A173A | gcA | gcG | 1 | 1 | B.1.533 | 0.009615 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.560 | 0.00463 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.560 | 0.00463 |
N | 173 | A173A | gcA | gcT | 1 | 1 | B.1.564 | 0.000426 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.564 | 0.000426 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.564.1 | 0.001577 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.576 | 0.000907 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.576 | 0.000907 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.577 | 0.000687 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.580 | 0.004065 |
N | 173 | A173T | Gca | Aca | 1 | 1 | B.1.582 | 0.000491 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.586 | 0.010989 |
N | 173 | A173del | GCA | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.596 | 0.000087 |
N | 173 | A173N | GCA | AAC | 1 | 1 | B.1.617.1 | 0.000129 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.621 | 0.000089 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.627 | 0.00202 |
N | 173 | A173A | gcA | gcG | 1 | 1 | B.1.628 | 0.000352 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.631 | 0.003367 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.1.637 | 0.000073 |
N | 173 | A173V | gCa | gTa | 1 | 1 | B.28 | 0.003279 |
N | 173 | A173A | gcA | gcT | 1 | 1 | C.1 | 0.002392 |
N | 173 | A173A | gcA | gcT | 1 | 1 | C.14 | 0.004329 |
N | 173 | A173A | gcA | gcT | 1 | 1 | C.23 | 0.005814 |
N | 173 | A173A | gcA | gcG | 1 | 1 | C.26 | 0.007353 |
N | 173 | A173V | gCa | gTa | 1 | 1 | C.35 | 0.000774 |
N | 173 | A173P | Gca | Cca | 1 | 1 | C.35 | 0.000774 |
N | 173 | A173A | gcA | gcT | 1 | 1 | C.37 | 0.000116 |
N | 173 | A173A | gcA | gcT | 1 | 1 | C.38 | 0.008065 |
N | 173 | A173T | GcA | AcT | 1 | 1 | P.1 | 0.000016 |
N | 173 | A173del | GCA | --- | 1 | 1 | P.1 | 0.000016 |
N | 173 | A173I | GCa | ATa | 1 | 1 | P.1 | 0.000016 |
N | 173 | A173S | Gca | Tca | 1 | 1 | P.1.14 | 0.000048 |
N | 173 | A173del | GCA | --- | 1 | 1 | P.1.15 | 0.000232 |
N | 173 | A173A | gcA | gcG | 1 | 1 | P.1.16 | 0.000374 |
N | 173 | A173V | gCa | gTa | 1 | 1 | P.1.17 | 0.000162 |
N | 173 | A173A | gcA | gcT | 1 | 1 | P.1.7 | 0.000319 |
N | 173 | A173V | gCa | gTa | 1 | 1 | P.2 | 0.000187 |
N | 173 | A173V | gCa | gTa | 1 | 1 | Q.3 | 0.000145 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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