CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 172

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N172Y172YsyntaCtaT25052505128787-28789
N172Y172deldelTAC---5555128787-28789
N172Y172NnonsynTacAac3030128787-28789
N172Y172HnonsynTacCac30290.96666728787-28789
N172Y172HnonsynTaCCaT3010.033333328787-28789
N172Y172CnonsyntActGc2020128787-28789
N172Y172DnonsynTacGac77128787-28789
N172Y172XnonsyntaCtaA650.83333328787-28789
N172Y172XnonsyntaCtaG610.16666728787-28789
N172Y172FnonsyntActTc44128787-28789
N172Y172del1delTac-ac320.66666728787-28789
N172Y172del1deltAct-c310.33333328787-28789
N172Y172del2deltACt--11128787-28789
N172Y172GnonsynTAcGGc11128787-28789
N172Y172SnonsynTACAGT11128787-28789
N172Y172RnonsynTACCGT11128787-28789

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N172Y172YtaCtaT25052505All0.000479
N172Y172YtaCtaT847847P.1.20.979191
N172Y172YtaCtaT341341AY.40.000531
N172Y172YtaCtaT139139B.1.1.70.000124
N172Y172YtaCtaT117117AY.440.000712
N172Y172YtaCtaT9898B.1.1.5190.003892
N172Y172YtaCtaT8383AY.250.000499
N172Y172YtaCtaT7272AY.30.000716
N172Y172YtaCtaT6363B.1.3190.192073
N172Y172YtaCtaT6363B.1.617.20.000237
N172Y172delTAC---5555All0.000011
N172Y172YtaCtaT5151AY.750.002857
N172Y172YtaCtaT3737B.1.177.600.008082
N172Y172YtaCtaT3535B.1.1.3980.112903
N172Y172YtaCtaT3434AY.430.000151
N172Y172YtaCtaT3232B.10.000293
N172Y172YtaCtaT3232B.1.20.000282
N172Y172NTacAac3030All0.000006
N172Y172HTacCac2930All0.000006
N172Y172HTaCCaT130All0
N172Y172YtaCtaT2626AY.1030.000161
N172Y172YtaCtaT2424B.1.2400.005174
N172Y172YtaCtaT2323B.1.10.000417
N172Y172CtActGc2020All0.000004
N172Y172YtaCtaT1818AY.1210.002436
N172Y172YtaCtaT1515B.1.36.380.024631
N172Y172YtaCtaT1515B.1.4270.000757
N172Y172YtaCtaT1313AY.46.60.000939
N172Y172YtaCtaT1313B.1.6370.00095
N172Y172YtaCtaT1212AY.98.10.000581
N172Y172YtaCtaT1111AY.390.000272
N172Y172delTAC---1111B.10.000101
N172Y172YtaCtaT1111B.1.4290.000259
N172Y172YtaCtaT1111P.1.140.000526
N172Y172delTAC---1010B.1.1.70.000009
N172Y172YtaCtaT1010P.10.000158
N172Y172YtaCtaT99AY.1190.000318
N172Y172YtaCtaT99AY.50.000186
N172Y172NTacAac99B.1.1.70.000008
N172Y172YtaCtaT88AY.470.000249
N172Y172YtaCtaT88B.1.5960.000697
N172Y172YtaCtaT88B.1.6210.000708
N172Y172DTacGac77All0.000001
N172Y172HTacCac77AY.40.000011
N172Y172CtActGc77B.10.000064
N172Y172XtaCtaA56All0.000001
N172Y172XtaCtaG16All0
N172Y172YtaCtaT66AY.790.007264
N172Y172NTacAac66B.10.000055
N172Y172YtaCtaT66B.1.4280.006122
N172Y172YtaCtaT66B.1.5260.000141
N172Y172YtaCtaT55AY.1020.000133
N172Y172YtaCtaT55AY.200.000194
N172Y172YtaCtaT55AY.230.000349
N172Y172YtaCtaT55AY.850.002136
N172Y172YtaCtaT55B.1.177.770.003631
N172Y172YtaCtaT55B.1.3400.021459
N172Y172YtaCtaT55B.1.3510.000149
N172Y172FtActTc44All0.000001
N172Y172YtaCtaT44AY.1000.000184
N172Y172YtaCtaT44AY.1200.000149
N172Y172YtaCtaT44AY.260.000113
N172Y172YtaCtaT44AY.590.002119
N172Y172YtaCtaT44B.1.1600.000125
N172Y172HTacCac44B.1.1770.000053
N172Y172YtaCtaT44B.1.2580.000266
N172Y172YtaCtaT44B.1.3110.001098
N172Y172del1Tac-ac23All0
N172Y172del1tAct-c13All0
N172Y172YtaCtaT33AY.1170.000254
N172Y172YtaCtaT33AY.290.000047
N172Y172YtaCtaT33AY.330.0002
N172Y172YtaCtaT33AY.39.10.000119
N172Y172YtaCtaT33AY.4.20.000065
N172Y172YtaCtaT33AY.550.002752
N172Y172YtaCtaT33AY.650.001599
N172Y172YtaCtaT33AY.980.000237
N172Y172YtaCtaT33AY.99.20.000276
N172Y172YtaCtaT33B.1.1770.00004
N172Y172YtaCtaT33B.1.2340.000396
N172Y172YtaCtaT33B.1.258.30.005025
N172Y172YtaCtaT33B.1.3980.008929
N172Y172YtaCtaT33B.1.466.20.001174
N172Y172delTAC---33B.1.5250.000339
N172Y172YtaCtaT33B.1.5250.000339
N172Y172YtaCtaT22AY.140.000176
N172Y172YtaCtaT22AY.190.002281
N172Y172YtaCtaT22AY.4.50.000215
N172Y172delTAC---22AY.400.001929
N172Y172YtaCtaT22AY.410.000588
N172Y172CtActGc22AY.430.000009
N172Y172DTacGac22AY.430.000009
N172Y172HTacCac22AY.430.000009
N172Y172delTAC---22AY.500.001599
N172Y172YtaCtaT22AY.60.000082
N172Y172DTacGac22AY.9.20.000073
N172Y172YtaCtaT22AY.9.20.000073
N172Y172NTacAac22AY.9.20.000073
N172Y172YtaCtaT22B0.000256
N172Y172HTacCac22B.10.000018
N172Y172delTAC---22B.1.10.000036
N172Y172delTAC---22B.1.1.280.000622
N172Y172YtaCtaT22B.1.1.5230.003125
N172Y172CtActGc22B.1.1.70.000002
N172Y172HTacCac22B.1.1.70.000002
N172Y172delTAC---22B.1.1770.000026
N172Y172YtaCtaT22B.1.2430.000139
N172Y172HTacCac22B.1.3510.000059
N172Y172YtaCtaT22B.1.360.000292
N172Y172YtaCtaT22B.1.36.290.001035
N172Y172YtaCtaT22B.1.4080.00738
N172Y172YtaCtaT22B.1.438.10.000215
N172Y172YtaCtaT22B.1.5950.000522
N172Y172NTacAac22B.1.617.10.000258
N172Y172YtaCtaT22C.370.000232
N172Y172delTAC---22C.37.10.005236
N172Y172YtaCtaT22P.1.150.000465
N172Y172YtaCtaT11A.10.000282
N172Y172FtActTc11A.2.40.003367
N172Y172del2tACt--11All0
N172Y172RTACCGT11All0
N172Y172STACAGT11All0
N172Y172GTAcGGc11All0
N172Y172delTAC---11AY.1020.000027
N172Y172YtaCtaT11AY.1040.001984
N172Y172YtaCtaT11AY.1080.001103
N172Y172NTacAac11AY.1100.000113
N172Y172YtaCtaT11AY.120.10.000321
N172Y172YtaCtaT11AY.120.20.001285
N172Y172NTacAac11AY.130.000161
N172Y172YtaCtaT11AY.16.10.00047
N172Y172HTacCac11AY.200.000039
N172Y172del1Tac-ac11AY.230.00007
N172Y172delTAC---11AY.250.000006
N172Y172HTacCac11AY.250.000006
N172Y172XtaCtaG11AY.30.00001
N172Y172NTacAac11AY.30.00001
N172Y172YtaCtaT11AY.300.000396
N172Y172YtaCtaT11AY.320.000532
N172Y172YtaCtaT11AY.340.000097
N172Y172FtActTc11AY.40.000002
N172Y172NTacAac11AY.40.000002
N172Y172CtActGc11AY.40.000002
N172Y172HTacCac11AY.4.50.000107
N172Y172NTacAac11AY.400.000964
N172Y172NTacAac11AY.420.00004
N172Y172delTAC---11AY.430.000004
N172Y172XtaCtaA11AY.430.000004
N172Y172CtActGc11AY.440.000006
N172Y172HTaCCaT11AY.440.000006
N172Y172del1Tac-ac11AY.440.000006
N172Y172YtaCtaT11AY.460.000104
N172Y172DTacGac11AY.46.60.000072
N172Y172XtaCtaA11AY.50.000021
N172Y172CtActGc11AY.600.000938
N172Y172YtaCtaT11AY.610.000105
N172Y172YtaCtaT11AY.620.000436
N172Y172GTAcGGc11AY.620.000436
N172Y172YtaCtaT11AY.660.00107
N172Y172XtaCtaA11AY.680.000274
N172Y172YtaCtaT11AY.70.000196
N172Y172YtaCtaT11AY.740.000116
N172Y172delTAC---11AY.750.000056
N172Y172NTacAac11AY.750.000056
N172Y172YtaCtaT11AY.780.001541
N172Y172YtaCtaT11AY.90.000068
N172Y172CtActGc11AY.9.10.000084
N172Y172YtaCtaT11AY.900.000684
N172Y172YtaCtaT11AY.920.000287
N172Y172YtaCtaT11AY.930.000273
N172Y172delTAC---11AY.950.000761
N172Y172DTacGac11AY.980.000079
N172Y172HTacCac11AY.980.000079
N172Y172XtaCtaA11B.10.000009
N172Y172del2tACt--11B.10.000009
N172Y172CtActGc11B.1.10.000018
N172Y172YtaCtaT11B.1.1.10.000327
N172Y172YtaCtaT11B.1.1.1980.001468
N172Y172YtaCtaT11B.1.1.2050.003717
N172Y172YtaCtaT11B.1.1.250.000569
N172Y172YtaCtaT11B.1.1.2530.002506
N172Y172YtaCtaT11B.1.1.2690.001353
N172Y172del1tAct-c11B.1.1.2770.000759
N172Y172YtaCtaT11B.1.1.280.000311
N172Y172YtaCtaT11B.1.1.3030.002762
N172Y172delTAC---11B.1.1.330.000421
N172Y172YtaCtaT11B.1.1.3480.000796
N172Y172HTacCac11B.1.1.390.00051
N172Y172YtaCtaT11B.1.1.4340.000349
N172Y172YtaCtaT11B.1.1.500.000679
N172Y172NTacAac11B.1.1.5260.003546
N172Y172DTacGac11B.1.1.70.000001
N172Y172FtActTc11B.1.1.70.000001
N172Y172YtaCtaT11B.1.160.160.000929
N172Y172CtActGc11B.1.1770.000013
N172Y172YtaCtaT11B.1.177.170.000821
N172Y172YtaCtaT11B.1.177.40.000211
N172Y172YtaCtaT11B.1.177.570.000281
N172Y172delTAC---11B.1.177.620.001192
N172Y172RTACCGT11B.1.177.630.002703
N172Y172delTAC---11B.1.177.680.015152
N172Y172YtaCtaT11B.1.1810.019608
N172Y172HTacCac11B.1.20.000009
N172Y172delTAC---11B.1.20.000009
N172Y172FtActTc11B.1.2140.003663
N172Y172YtaCtaT11B.1.2210.000071
N172Y172CtActGc11B.1.2210.000071
N172Y172YtaCtaT11B.1.2350.002519
N172Y172YtaCtaT11B.1.2890.00266
N172Y172CtActGc11B.1.3510.00003
N172Y172delTAC---11B.1.3510.00003
N172Y172CtActGc11B.1.360.000146
N172Y172YtaCtaT11B.1.36.10.00114
N172Y172YtaCtaT11B.1.36.170.000494
N172Y172YtaCtaT11B.1.3750.00082
N172Y172XtaCtaA11B.1.4040.001302
N172Y172delTAC---11B.1.416.10.001563
N172Y172delTAC---11B.1.4270.00005
N172Y172NTacAac11B.1.4620.007246
N172Y172delTAC---11B.1.4650.003802
N172Y172YtaCtaT11B.1.4970.000315
N172Y172YtaCtaT11B.1.5030.002488
N172Y172HTacCac11B.1.5240.001406
N172Y172YtaCtaT11B.1.5400.009709
N172Y172delTAC---11B.1.5600.00463
N172Y172YtaCtaT11B.1.5740.002151
N172Y172delTAC---11B.1.5760.000907
N172Y172NTacAac11B.1.5760.000907
N172Y172YtaCtaT11B.1.5810.009434
N172Y172delTAC---11B.1.5960.000087
N172Y172NTacAac11B.1.5960.000087
N172Y172YtaCtaT11B.1.596.10.009346
N172Y172YtaCtaT11B.1.617.10.000129
N172Y172HTacCac11B.1.617.20.000004
N172Y172delTAC---11B.1.617.20.000004
N172Y172YtaCtaT11B.1.621.10.000506
N172Y172YtaCtaT11B.1.930.000934
N172Y172HTacCac11B.580.010204
N172Y172STACAGT11C.350.000774
N172Y172YtaCtaT11D.20.000075
N172Y172YtaCtaT11N.50.001767
N172Y172delTAC---11P.10.000016
N172Y172HTacCac11P.10.000016
N172Y172YtaCtaT11P.1.120.000484
N172Y172YtaCtaT11P.1.130.000898
N172Y172delTAC---11P.1.150.000232
N172Y172YtaCtaT11P.1.160.000374
N172Y172YtaCtaT11P.1.70.000319
N172Y172YtaCtaT11P.30.001595
N172Y172YtaCtaT11Q.80.000165