CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 172 | Y172Y | syn | taC | taT | 2505 | 2505 | 1 | 28787-28789 | |
N | 172 | Y172del | del | TAC | --- | 55 | 55 | 1 | 28787-28789 | |
N | 172 | Y172N | nonsyn | Tac | Aac | 30 | 30 | 1 | 28787-28789 | |
N | 172 | Y172H | nonsyn | Tac | Cac | 30 | 29 | 0.966667 | 28787-28789 | |
N | 172 | Y172H | nonsyn | TaC | CaT | 30 | 1 | 0.0333333 | 28787-28789 | |
N | 172 | Y172C | nonsyn | tAc | tGc | 20 | 20 | 1 | 28787-28789 | |
N | 172 | Y172D | nonsyn | Tac | Gac | 7 | 7 | 1 | 28787-28789 | |
N | 172 | Y172X | nonsyn | taC | taA | 6 | 5 | 0.833333 | 28787-28789 | |
N | 172 | Y172X | nonsyn | taC | taG | 6 | 1 | 0.166667 | 28787-28789 | |
N | 172 | Y172F | nonsyn | tAc | tTc | 4 | 4 | 1 | 28787-28789 | |
N | 172 | Y172del1 | del | Tac | -ac | 3 | 2 | 0.666667 | 28787-28789 | |
N | 172 | Y172del1 | del | tAc | t-c | 3 | 1 | 0.333333 | 28787-28789 | |
N | 172 | Y172del2 | del | tAC | t-- | 1 | 1 | 1 | 28787-28789 | |
N | 172 | Y172G | nonsyn | TAc | GGc | 1 | 1 | 1 | 28787-28789 | |
N | 172 | Y172S | nonsyn | TAC | AGT | 1 | 1 | 1 | 28787-28789 | |
N | 172 | Y172R | nonsyn | TAC | CGT | 1 | 1 | 1 | 28787-28789 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 172 | Y172Y | taC | taT | 2505 | 2505 | All | 0.000479 |
N | 172 | Y172Y | taC | taT | 847 | 847 | P.1.2 | 0.979191 |
N | 172 | Y172Y | taC | taT | 341 | 341 | AY.4 | 0.000531 |
N | 172 | Y172Y | taC | taT | 139 | 139 | B.1.1.7 | 0.000124 |
N | 172 | Y172Y | taC | taT | 117 | 117 | AY.44 | 0.000712 |
N | 172 | Y172Y | taC | taT | 98 | 98 | B.1.1.519 | 0.003892 |
N | 172 | Y172Y | taC | taT | 83 | 83 | AY.25 | 0.000499 |
N | 172 | Y172Y | taC | taT | 72 | 72 | AY.3 | 0.000716 |
N | 172 | Y172Y | taC | taT | 63 | 63 | B.1.319 | 0.192073 |
N | 172 | Y172Y | taC | taT | 63 | 63 | B.1.617.2 | 0.000237 |
N | 172 | Y172del | TAC | --- | 55 | 55 | All | 0.000011 |
N | 172 | Y172Y | taC | taT | 51 | 51 | AY.75 | 0.002857 |
N | 172 | Y172Y | taC | taT | 37 | 37 | B.1.177.60 | 0.008082 |
N | 172 | Y172Y | taC | taT | 35 | 35 | B.1.1.398 | 0.112903 |
N | 172 | Y172Y | taC | taT | 34 | 34 | AY.43 | 0.000151 |
N | 172 | Y172Y | taC | taT | 32 | 32 | B.1 | 0.000293 |
N | 172 | Y172Y | taC | taT | 32 | 32 | B.1.2 | 0.000282 |
N | 172 | Y172N | Tac | Aac | 30 | 30 | All | 0.000006 |
N | 172 | Y172H | Tac | Cac | 29 | 30 | All | 0.000006 |
N | 172 | Y172H | TaC | CaT | 1 | 30 | All | 0 |
N | 172 | Y172Y | taC | taT | 26 | 26 | AY.103 | 0.000161 |
N | 172 | Y172Y | taC | taT | 24 | 24 | B.1.240 | 0.005174 |
N | 172 | Y172Y | taC | taT | 23 | 23 | B.1.1 | 0.000417 |
N | 172 | Y172C | tAc | tGc | 20 | 20 | All | 0.000004 |
N | 172 | Y172Y | taC | taT | 18 | 18 | AY.121 | 0.002436 |
N | 172 | Y172Y | taC | taT | 15 | 15 | B.1.36.38 | 0.024631 |
N | 172 | Y172Y | taC | taT | 15 | 15 | B.1.427 | 0.000757 |
N | 172 | Y172Y | taC | taT | 13 | 13 | AY.46.6 | 0.000939 |
N | 172 | Y172Y | taC | taT | 13 | 13 | B.1.637 | 0.00095 |
N | 172 | Y172Y | taC | taT | 12 | 12 | AY.98.1 | 0.000581 |
N | 172 | Y172Y | taC | taT | 11 | 11 | AY.39 | 0.000272 |
N | 172 | Y172del | TAC | --- | 11 | 11 | B.1 | 0.000101 |
N | 172 | Y172Y | taC | taT | 11 | 11 | B.1.429 | 0.000259 |
N | 172 | Y172Y | taC | taT | 11 | 11 | P.1.14 | 0.000526 |
N | 172 | Y172del | TAC | --- | 10 | 10 | B.1.1.7 | 0.000009 |
N | 172 | Y172Y | taC | taT | 10 | 10 | P.1 | 0.000158 |
N | 172 | Y172Y | taC | taT | 9 | 9 | AY.119 | 0.000318 |
N | 172 | Y172Y | taC | taT | 9 | 9 | AY.5 | 0.000186 |
N | 172 | Y172N | Tac | Aac | 9 | 9 | B.1.1.7 | 0.000008 |
N | 172 | Y172Y | taC | taT | 8 | 8 | AY.47 | 0.000249 |
N | 172 | Y172Y | taC | taT | 8 | 8 | B.1.596 | 0.000697 |
N | 172 | Y172Y | taC | taT | 8 | 8 | B.1.621 | 0.000708 |
N | 172 | Y172D | Tac | Gac | 7 | 7 | All | 0.000001 |
N | 172 | Y172H | Tac | Cac | 7 | 7 | AY.4 | 0.000011 |
N | 172 | Y172C | tAc | tGc | 7 | 7 | B.1 | 0.000064 |
N | 172 | Y172X | taC | taA | 5 | 6 | All | 0.000001 |
N | 172 | Y172X | taC | taG | 1 | 6 | All | 0 |
N | 172 | Y172Y | taC | taT | 6 | 6 | AY.79 | 0.007264 |
N | 172 | Y172N | Tac | Aac | 6 | 6 | B.1 | 0.000055 |
N | 172 | Y172Y | taC | taT | 6 | 6 | B.1.428 | 0.006122 |
N | 172 | Y172Y | taC | taT | 6 | 6 | B.1.526 | 0.000141 |
N | 172 | Y172Y | taC | taT | 5 | 5 | AY.102 | 0.000133 |
N | 172 | Y172Y | taC | taT | 5 | 5 | AY.20 | 0.000194 |
N | 172 | Y172Y | taC | taT | 5 | 5 | AY.23 | 0.000349 |
N | 172 | Y172Y | taC | taT | 5 | 5 | AY.85 | 0.002136 |
N | 172 | Y172Y | taC | taT | 5 | 5 | B.1.177.77 | 0.003631 |
N | 172 | Y172Y | taC | taT | 5 | 5 | B.1.340 | 0.021459 |
N | 172 | Y172Y | taC | taT | 5 | 5 | B.1.351 | 0.000149 |
N | 172 | Y172F | tAc | tTc | 4 | 4 | All | 0.000001 |
N | 172 | Y172Y | taC | taT | 4 | 4 | AY.100 | 0.000184 |
N | 172 | Y172Y | taC | taT | 4 | 4 | AY.120 | 0.000149 |
N | 172 | Y172Y | taC | taT | 4 | 4 | AY.26 | 0.000113 |
N | 172 | Y172Y | taC | taT | 4 | 4 | AY.59 | 0.002119 |
N | 172 | Y172Y | taC | taT | 4 | 4 | B.1.160 | 0.000125 |
N | 172 | Y172H | Tac | Cac | 4 | 4 | B.1.177 | 0.000053 |
N | 172 | Y172Y | taC | taT | 4 | 4 | B.1.258 | 0.000266 |
N | 172 | Y172Y | taC | taT | 4 | 4 | B.1.311 | 0.001098 |
N | 172 | Y172del1 | Tac | -ac | 2 | 3 | All | 0 |
N | 172 | Y172del1 | tAc | t-c | 1 | 3 | All | 0 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.117 | 0.000254 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.29 | 0.000047 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.33 | 0.0002 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.39.1 | 0.000119 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.4.2 | 0.000065 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.55 | 0.002752 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.65 | 0.001599 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.98 | 0.000237 |
N | 172 | Y172Y | taC | taT | 3 | 3 | AY.99.2 | 0.000276 |
N | 172 | Y172Y | taC | taT | 3 | 3 | B.1.177 | 0.00004 |
N | 172 | Y172Y | taC | taT | 3 | 3 | B.1.234 | 0.000396 |
N | 172 | Y172Y | taC | taT | 3 | 3 | B.1.258.3 | 0.005025 |
N | 172 | Y172Y | taC | taT | 3 | 3 | B.1.398 | 0.008929 |
N | 172 | Y172Y | taC | taT | 3 | 3 | B.1.466.2 | 0.001174 |
N | 172 | Y172del | TAC | --- | 3 | 3 | B.1.525 | 0.000339 |
N | 172 | Y172Y | taC | taT | 3 | 3 | B.1.525 | 0.000339 |
N | 172 | Y172Y | taC | taT | 2 | 2 | AY.14 | 0.000176 |
N | 172 | Y172Y | taC | taT | 2 | 2 | AY.19 | 0.002281 |
N | 172 | Y172Y | taC | taT | 2 | 2 | AY.4.5 | 0.000215 |
N | 172 | Y172del | TAC | --- | 2 | 2 | AY.40 | 0.001929 |
N | 172 | Y172Y | taC | taT | 2 | 2 | AY.41 | 0.000588 |
N | 172 | Y172C | tAc | tGc | 2 | 2 | AY.43 | 0.000009 |
N | 172 | Y172D | Tac | Gac | 2 | 2 | AY.43 | 0.000009 |
N | 172 | Y172H | Tac | Cac | 2 | 2 | AY.43 | 0.000009 |
N | 172 | Y172del | TAC | --- | 2 | 2 | AY.50 | 0.001599 |
N | 172 | Y172Y | taC | taT | 2 | 2 | AY.6 | 0.000082 |
N | 172 | Y172D | Tac | Gac | 2 | 2 | AY.9.2 | 0.000073 |
N | 172 | Y172Y | taC | taT | 2 | 2 | AY.9.2 | 0.000073 |
N | 172 | Y172N | Tac | Aac | 2 | 2 | AY.9.2 | 0.000073 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B | 0.000256 |
N | 172 | Y172H | Tac | Cac | 2 | 2 | B.1 | 0.000018 |
N | 172 | Y172del | TAC | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 172 | Y172del | TAC | --- | 2 | 2 | B.1.1.28 | 0.000622 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B.1.1.523 | 0.003125 |
N | 172 | Y172C | tAc | tGc | 2 | 2 | B.1.1.7 | 0.000002 |
N | 172 | Y172H | Tac | Cac | 2 | 2 | B.1.1.7 | 0.000002 |
N | 172 | Y172del | TAC | --- | 2 | 2 | B.1.177 | 0.000026 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B.1.243 | 0.000139 |
N | 172 | Y172H | Tac | Cac | 2 | 2 | B.1.351 | 0.000059 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B.1.36 | 0.000292 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B.1.36.29 | 0.001035 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B.1.408 | 0.00738 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B.1.438.1 | 0.000215 |
N | 172 | Y172Y | taC | taT | 2 | 2 | B.1.595 | 0.000522 |
N | 172 | Y172N | Tac | Aac | 2 | 2 | B.1.617.1 | 0.000258 |
N | 172 | Y172Y | taC | taT | 2 | 2 | C.37 | 0.000232 |
N | 172 | Y172del | TAC | --- | 2 | 2 | C.37.1 | 0.005236 |
N | 172 | Y172Y | taC | taT | 2 | 2 | P.1.15 | 0.000465 |
N | 172 | Y172Y | taC | taT | 1 | 1 | A.1 | 0.000282 |
N | 172 | Y172F | tAc | tTc | 1 | 1 | A.2.4 | 0.003367 |
N | 172 | Y172del2 | tAC | t-- | 1 | 1 | All | 0 |
N | 172 | Y172R | TAC | CGT | 1 | 1 | All | 0 |
N | 172 | Y172S | TAC | AGT | 1 | 1 | All | 0 |
N | 172 | Y172G | TAc | GGc | 1 | 1 | All | 0 |
N | 172 | Y172del | TAC | --- | 1 | 1 | AY.102 | 0.000027 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.104 | 0.001984 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.108 | 0.001103 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | AY.110 | 0.000113 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.120.1 | 0.000321 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.120.2 | 0.001285 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | AY.13 | 0.000161 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.16.1 | 0.00047 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | AY.20 | 0.000039 |
N | 172 | Y172del1 | Tac | -ac | 1 | 1 | AY.23 | 0.00007 |
N | 172 | Y172del | TAC | --- | 1 | 1 | AY.25 | 0.000006 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | AY.25 | 0.000006 |
N | 172 | Y172X | taC | taG | 1 | 1 | AY.3 | 0.00001 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | AY.3 | 0.00001 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.30 | 0.000396 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.34 | 0.000097 |
N | 172 | Y172F | tAc | tTc | 1 | 1 | AY.4 | 0.000002 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | AY.4 | 0.000002 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | AY.4 | 0.000002 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | AY.4.5 | 0.000107 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | AY.40 | 0.000964 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | AY.42 | 0.00004 |
N | 172 | Y172del | TAC | --- | 1 | 1 | AY.43 | 0.000004 |
N | 172 | Y172X | taC | taA | 1 | 1 | AY.43 | 0.000004 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | AY.44 | 0.000006 |
N | 172 | Y172H | TaC | CaT | 1 | 1 | AY.44 | 0.000006 |
N | 172 | Y172del1 | Tac | -ac | 1 | 1 | AY.44 | 0.000006 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.46 | 0.000104 |
N | 172 | Y172D | Tac | Gac | 1 | 1 | AY.46.6 | 0.000072 |
N | 172 | Y172X | taC | taA | 1 | 1 | AY.5 | 0.000021 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | AY.60 | 0.000938 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.61 | 0.000105 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.62 | 0.000436 |
N | 172 | Y172G | TAc | GGc | 1 | 1 | AY.62 | 0.000436 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.66 | 0.00107 |
N | 172 | Y172X | taC | taA | 1 | 1 | AY.68 | 0.000274 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.7 | 0.000196 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.74 | 0.000116 |
N | 172 | Y172del | TAC | --- | 1 | 1 | AY.75 | 0.000056 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | AY.75 | 0.000056 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.78 | 0.001541 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.9 | 0.000068 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | AY.9.1 | 0.000084 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.90 | 0.000684 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.92 | 0.000287 |
N | 172 | Y172Y | taC | taT | 1 | 1 | AY.93 | 0.000273 |
N | 172 | Y172del | TAC | --- | 1 | 1 | AY.95 | 0.000761 |
N | 172 | Y172D | Tac | Gac | 1 | 1 | AY.98 | 0.000079 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | AY.98 | 0.000079 |
N | 172 | Y172X | taC | taA | 1 | 1 | B.1 | 0.000009 |
N | 172 | Y172del2 | tAC | t-- | 1 | 1 | B.1 | 0.000009 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | B.1.1 | 0.000018 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.1 | 0.000327 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.198 | 0.001468 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.205 | 0.003717 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.253 | 0.002506 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.269 | 0.001353 |
N | 172 | Y172del1 | tAc | t-c | 1 | 1 | B.1.1.277 | 0.000759 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.28 | 0.000311 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.303 | 0.002762 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.348 | 0.000796 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | B.1.1.39 | 0.00051 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.434 | 0.000349 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.1.50 | 0.000679 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | B.1.1.526 | 0.003546 |
N | 172 | Y172D | Tac | Gac | 1 | 1 | B.1.1.7 | 0.000001 |
N | 172 | Y172F | tAc | tTc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.160.16 | 0.000929 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | B.1.177 | 0.000013 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.177.17 | 0.000821 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.177.4 | 0.000211 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.177.62 | 0.001192 |
N | 172 | Y172R | TAC | CGT | 1 | 1 | B.1.177.63 | 0.002703 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.177.68 | 0.015152 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.181 | 0.019608 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | B.1.2 | 0.000009 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 172 | Y172F | tAc | tTc | 1 | 1 | B.1.214 | 0.003663 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.221 | 0.000071 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | B.1.221 | 0.000071 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.235 | 0.002519 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.289 | 0.00266 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | B.1.351 | 0.00003 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.351 | 0.00003 |
N | 172 | Y172C | tAc | tGc | 1 | 1 | B.1.36 | 0.000146 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.36.1 | 0.00114 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.36.17 | 0.000494 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.375 | 0.00082 |
N | 172 | Y172X | taC | taA | 1 | 1 | B.1.404 | 0.001302 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.416.1 | 0.001563 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | B.1.462 | 0.007246 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.465 | 0.003802 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.497 | 0.000315 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.503 | 0.002488 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | B.1.524 | 0.001406 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.540 | 0.009709 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.560 | 0.00463 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.574 | 0.002151 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.576 | 0.000907 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | B.1.576 | 0.000907 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.581 | 0.009434 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.596 | 0.000087 |
N | 172 | Y172N | Tac | Aac | 1 | 1 | B.1.596 | 0.000087 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.596.1 | 0.009346 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.617.1 | 0.000129 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | B.1.617.2 | 0.000004 |
N | 172 | Y172del | TAC | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.621.1 | 0.000506 |
N | 172 | Y172Y | taC | taT | 1 | 1 | B.1.93 | 0.000934 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | B.58 | 0.010204 |
N | 172 | Y172S | TAC | AGT | 1 | 1 | C.35 | 0.000774 |
N | 172 | Y172Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
N | 172 | Y172Y | taC | taT | 1 | 1 | N.5 | 0.001767 |
N | 172 | Y172del | TAC | --- | 1 | 1 | P.1 | 0.000016 |
N | 172 | Y172H | Tac | Cac | 1 | 1 | P.1 | 0.000016 |
N | 172 | Y172Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
N | 172 | Y172Y | taC | taT | 1 | 1 | P.1.13 | 0.000898 |
N | 172 | Y172del | TAC | --- | 1 | 1 | P.1.15 | 0.000232 |
N | 172 | Y172Y | taC | taT | 1 | 1 | P.1.16 | 0.000374 |
N | 172 | Y172Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
N | 172 | Y172Y | taC | taT | 1 | 1 | P.3 | 0.001595 |
N | 172 | Y172Y | taC | taT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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