CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 165 | T165I | nonsyn | aCa | aTa | 885 | 878 | 0.99209 | 28766-28768 | |
N | 165 | T165I | nonsyn | aCA | aTC | 885 | 4 | 0.00451977 | 28766-28768 | |
N | 165 | T165I | nonsyn | aCA | aTT | 885 | 3 | 0.00338983 | 28766-28768 | |
N | 165 | T165A | nonsyn | Aca | Gca | 764 | 761 | 0.996073 | 28766-28768 | |
N | 165 | T165A | nonsyn | AcA | GcT | 764 | 2 | 0.0026178 | 28766-28768 | |
N | 165 | T165A | nonsyn | AcA | GcC | 764 | 1 | 0.0013089 | 28766-28768 | |
N | 165 | T165T | syn | acA | acG | 626 | 309 | 0.49361 | 28766-28768 | |
N | 165 | T165T | syn | acA | acT | 626 | 285 | 0.455272 | 28766-28768 | |
N | 165 | T165T | syn | acA | acC | 626 | 32 | 0.0511182 | 28766-28768 | |
N | 165 | T165del | del | ACA | --- | 104 | 104 | 1 | 28766-28768 | |
N | 165 | T165S | nonsyn | Aca | Tca | 83 | 62 | 0.746988 | 28766-28768 | |
N | 165 | T165S | nonsyn | AcA | TcC | 83 | 14 | 0.168675 | 28766-28768 | |
N | 165 | T165S | nonsyn | AcA | TcT | 83 | 3 | 0.0361446 | 28766-28768 | |
N | 165 | T165S | nonsyn | aCA | aGC | 83 | 3 | 0.0361446 | 28766-28768 | |
N | 165 | T165S | nonsyn | aCA | aGT | 83 | 1 | 0.0120482 | 28766-28768 | |
N | 165 | T165K | nonsyn | aCa | aAa | 43 | 42 | 0.976744 | 28766-28768 | |
N | 165 | T165K | nonsyn | aCA | aAG | 43 | 1 | 0.0232558 | 28766-28768 | |
N | 165 | T165P | nonsyn | Aca | Cca | 33 | 23 | 0.69697 | 28766-28768 | |
N | 165 | T165P | nonsyn | AcA | CcC | 33 | 5 | 0.151515 | 28766-28768 | |
N | 165 | T165P | nonsyn | AcA | CcT | 33 | 4 | 0.121212 | 28766-28768 | |
N | 165 | T165P | nonsyn | AcA | CcG | 33 | 1 | 0.030303 | 28766-28768 | |
N | 165 | T165N | nonsyn | aCA | aAC | 22 | 16 | 0.727273 | 28766-28768 | |
N | 165 | T165N | nonsyn | aCA | aAT | 22 | 6 | 0.272727 | 28766-28768 | |
N | 165 | T165X | nonsyn | ACa | TAa | 19 | 18 | 0.947368 | 28766-28768 | |
N | 165 | T165L | nonsyn | ACa | TTa | 19 | 10 | 0.526316 | 28766-28768 | |
N | 165 | T165L | nonsyn | ACa | CTa | 19 | 6 | 0.315789 | 28766-28768 | |
N | 165 | T165L | nonsyn | ACA | CTC | 19 | 2 | 0.105263 | 28766-28768 | |
N | 165 | T165L | nonsyn | ACA | CTT | 19 | 1 | 0.0526316 | 28766-28768 | |
N | 165 | T165X | nonsyn | ACa | TGa | 19 | 1 | 0.0526316 | 28766-28768 | |
N | 165 | T165Y | nonsyn | ACA | TAC | 13 | 11 | 0.846154 | 28766-28768 | |
N | 165 | T165Y | nonsyn | ACA | TAT | 13 | 2 | 0.153846 | 28766-28768 | |
N | 165 | T165Q | nonsyn | ACa | CAa | 12 | 12 | 1 | 28766-28768 | |
N | 165 | T165R | nonsyn | aCa | aGa | 11 | 7 | 0.636364 | 28766-28768 | |
N | 165 | T165R | nonsyn | ACa | CGa | 11 | 2 | 0.181818 | 28766-28768 | |
N | 165 | T165R | nonsyn | ACA | CGT | 11 | 1 | 0.0909091 | 28766-28768 | |
N | 165 | T165R | nonsyn | ACA | CGC | 11 | 1 | 0.0909091 | 28766-28768 | |
N | 165 | T165H | nonsyn | ACA | CAC | 9 | 5 | 0.555556 | 28766-28768 | |
N | 165 | T165H | nonsyn | ACA | CAT | 9 | 4 | 0.444444 | 28766-28768 | |
N | 165 | T165F | nonsyn | ACA | TTC | 7 | 4 | 0.571429 | 28766-28768 | |
N | 165 | T165F | nonsyn | ACA | TTT | 7 | 3 | 0.428571 | 28766-28768 | |
N | 165 | T165E | nonsyn | ACa | GAa | 3 | 3 | 1 | 28766-28768 | |
N | 165 | T165D | nonsyn | ACA | GAT | 3 | 2 | 0.666667 | 28766-28768 | |
N | 165 | T165D | nonsyn | ACA | GAC | 3 | 1 | 0.333333 | 28766-28768 | |
N | 165 | T165del1 | del | ACA | -NN | 2 | 1 | 0.5 | 28766-28768 | |
N | 165 | T165del1 | del | Aca | -ca | 2 | 1 | 0.5 | 28766-28768 | |
N | 165 | T165del2 | del | ACa | --a | 1 | 1 | 1 | 28766-28768 | |
N | 165 | T165C | nonsyn | ACA | TGC | 1 | 1 | 1 | 28766-28768 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 165 | T165I | aCa | aTa | 878 | 885 | All | 0.000168 |
N | 165 | T165I | aCA | aTC | 4 | 885 | All | 0.000001 |
N | 165 | T165I | aCA | aTT | 3 | 885 | All | 0.000001 |
N | 165 | T165A | Aca | Gca | 761 | 764 | All | 0.000146 |
N | 165 | T165A | AcA | GcT | 2 | 764 | All | 0 |
N | 165 | T165A | AcA | GcC | 1 | 764 | All | 0 |
N | 165 | T165A | Aca | Gca | 685 | 685 | AY.4 | 0.001066 |
N | 165 | T165T | acA | acG | 309 | 626 | All | 0.000059 |
N | 165 | T165T | acA | acT | 285 | 626 | All | 0.000055 |
N | 165 | T165T | acA | acC | 32 | 626 | All | 0.000006 |
N | 165 | T165I | aCa | aTa | 191 | 191 | B.1.1.7 | 0.000171 |
N | 165 | T165T | acA | acG | 123 | 179 | B.1.1.7 | 0.00011 |
N | 165 | T165T | acA | acT | 55 | 179 | B.1.1.7 | 0.000049 |
N | 165 | T165T | acA | acC | 1 | 179 | B.1.1.7 | 0.000001 |
N | 165 | T165del | ACA | --- | 104 | 104 | All | 0.00002 |
N | 165 | T165T | acA | acT | 54 | 87 | AY.4 | 0.000084 |
N | 165 | T165T | acA | acG | 32 | 87 | AY.4 | 0.00005 |
N | 165 | T165T | acA | acC | 1 | 87 | AY.4 | 0.000002 |
N | 165 | T165S | Aca | Tca | 62 | 83 | All | 0.000012 |
N | 165 | T165S | AcA | TcC | 14 | 83 | All | 0.000003 |
N | 165 | T165S | aCA | aGC | 3 | 83 | All | 0.000001 |
N | 165 | T165S | AcA | TcT | 3 | 83 | All | 0.000001 |
N | 165 | T165S | aCA | aGT | 1 | 83 | All | 0 |
N | 165 | T165I | aCa | aTa | 67 | 67 | AY.4 | 0.000104 |
N | 165 | T165I | aCa | aTa | 52 | 52 | B.1.604 | 0.896552 |
N | 165 | T165I | aCa | aTa | 44 | 44 | AY.103 | 0.000273 |
N | 165 | T165I | aCa | aTa | 44 | 44 | B.1.526 | 0.001034 |
N | 165 | T165K | aCa | aAa | 42 | 43 | All | 0.000008 |
N | 165 | T165K | aCA | aAG | 1 | 43 | All | 0 |
N | 165 | T165I | aCa | aTa | 41 | 41 | AY.25 | 0.000247 |
N | 165 | T165T | acA | acT | 40 | 40 | AY.113 | 0.005696 |
N | 165 | T165del | ACA | --- | 40 | 40 | B.1.1.7 | 0.000036 |
N | 165 | T165I | aCa | aTa | 40 | 40 | B.1.617.2 | 0.000151 |
N | 165 | T165P | Aca | Cca | 23 | 33 | All | 0.000004 |
N | 165 | T165P | AcA | CcC | 5 | 33 | All | 0.000001 |
N | 165 | T165P | AcA | CcT | 4 | 33 | All | 0.000001 |
N | 165 | T165P | AcA | CcG | 1 | 33 | All | 0 |
N | 165 | T165T | acA | acG | 30 | 30 | AY.4.2 | 0.000651 |
N | 165 | T165I | aCa | aTa | 30 | 30 | AY.44 | 0.000183 |
N | 165 | T165I | aCa | aTa | 28 | 28 | AY.9.2 | 0.001028 |
N | 165 | T165I | aCa | aTa | 28 | 28 | P.1 | 0.000441 |
N | 165 | T165S | Aca | Tca | 24 | 24 | B.1.1.7 | 0.000021 |
N | 165 | T165T | acA | acT | 13 | 24 | B.1.617.2 | 0.000049 |
N | 165 | T165T | acA | acG | 9 | 24 | B.1.617.2 | 0.000034 |
N | 165 | T165T | acA | acC | 2 | 24 | B.1.617.2 | 0.000008 |
N | 165 | T165N | aCA | aAC | 16 | 22 | All | 0.000003 |
N | 165 | T165N | aCA | aAT | 6 | 22 | All | 0.000001 |
N | 165 | T165I | aCa | aTa | 22 | 22 | B.1.2 | 0.000194 |
N | 165 | T165T | acA | acT | 20 | 20 | AY.5.4 | 0.005534 |
N | 165 | T165X | ACa | TAa | 18 | 19 | All | 0.000003 |
N | 165 | T165L | ACa | TTa | 10 | 19 | All | 0.000002 |
N | 165 | T165L | ACa | CTa | 6 | 19 | All | 0.000001 |
N | 165 | T165L | ACA | CTC | 2 | 19 | All | 0 |
N | 165 | T165X | ACa | TGa | 1 | 19 | All | 0 |
N | 165 | T165L | ACA | CTT | 1 | 19 | All | 0 |
N | 165 | T165T | acA | acG | 19 | 19 | AY.3 | 0.000189 |
N | 165 | T165S | Aca | Tca | 13 | 19 | B.1 | 0.000119 |
N | 165 | T165S | AcA | TcC | 4 | 19 | B.1 | 0.000037 |
N | 165 | T165S | aCA | aGC | 1 | 19 | B.1 | 0.000009 |
N | 165 | T165S | AcA | TcT | 1 | 19 | B.1 | 0.000009 |
N | 165 | T165T | acA | acT | 16 | 18 | B.1.2 | 0.000141 |
N | 165 | T165T | acA | acG | 2 | 18 | B.1.2 | 0.000018 |
N | 165 | T165T | acA | acG | 13 | 17 | AY.103 | 0.000081 |
N | 165 | T165T | acA | acT | 4 | 17 | AY.103 | 0.000025 |
N | 165 | T165K | aCa | aAa | 17 | 17 | B.1 | 0.000156 |
N | 165 | T165T | acA | acT | 11 | 17 | B.1.177 | 0.000145 |
N | 165 | T165T | acA | acC | 5 | 17 | B.1.177 | 0.000066 |
N | 165 | T165T | acA | acG | 1 | 17 | B.1.177 | 0.000013 |
N | 165 | T165I | aCa | aTa | 16 | 16 | AY.43 | 0.000071 |
N | 165 | T165I | aCa | aTa | 16 | 16 | AY.5 | 0.00033 |
N | 165 | T165I | aCa | aTa | 16 | 16 | AY.75 | 0.000896 |
N | 165 | T165I | aCa | aTa | 16 | 16 | Q.2 | 0.009816 |
N | 165 | T165T | acA | acC | 8 | 15 | B.1 | 0.000073 |
N | 165 | T165T | acA | acG | 4 | 15 | B.1 | 0.000037 |
N | 165 | T165T | acA | acT | 3 | 15 | B.1 | 0.000027 |
N | 165 | T165Y | ACA | TAC | 11 | 13 | All | 0.000002 |
N | 165 | T165Y | ACA | TAT | 2 | 13 | All | 0 |
N | 165 | T165T | acA | acT | 10 | 13 | AY.44 | 0.000061 |
N | 165 | T165T | acA | acG | 3 | 13 | AY.44 | 0.000018 |
N | 165 | T165T | acA | acG | 13 | 13 | AY.75 | 0.000728 |
N | 165 | T165A | Aca | Gca | 13 | 13 | B.1.617.2 | 0.000049 |
N | 165 | T165Q | ACa | CAa | 12 | 12 | All | 0.000002 |
N | 165 | T165A | Aca | Gca | 12 | 12 | B.1.177 | 0.000158 |
N | 165 | T165R | aCa | aGa | 7 | 11 | All | 0.000001 |
N | 165 | T165R | ACa | CGa | 2 | 11 | All | 0 |
N | 165 | T165R | ACA | CGT | 1 | 11 | All | 0 |
N | 165 | T165R | ACA | CGC | 1 | 11 | All | 0 |
N | 165 | T165T | acA | acG | 9 | 11 | AY.25 | 0.000054 |
N | 165 | T165T | acA | acT | 2 | 11 | AY.25 | 0.000012 |
N | 165 | T165I | aCa | aTa | 11 | 11 | AY.47 | 0.000342 |
N | 165 | T165S | Aca | Tca | 5 | 11 | B.1.177 | 0.000066 |
N | 165 | T165S | AcA | TcC | 2 | 11 | B.1.177 | 0.000026 |
N | 165 | T165S | AcA | TcT | 2 | 11 | B.1.177 | 0.000026 |
N | 165 | T165S | aCA | aGC | 1 | 11 | B.1.177 | 0.000013 |
N | 165 | T165S | aCA | aGT | 1 | 11 | B.1.177 | 0.000013 |
N | 165 | T165I | aCa | aTa | 10 | 10 | AY.3 | 0.000099 |
N | 165 | T165I | aCa | aTa | 9 | 10 | B.1 | 0.000082 |
N | 165 | T165I | aCA | aTT | 1 | 10 | B.1 | 0.000009 |
N | 165 | T165I | aCa | aTa | 7 | 10 | B.1.177 | 0.000092 |
N | 165 | T165P | Aca | Cca | 5 | 10 | B.1.177 | 0.000066 |
N | 165 | T165P | AcA | CcC | 3 | 10 | B.1.177 | 0.00004 |
N | 165 | T165P | AcA | CcT | 2 | 10 | B.1.177 | 0.000026 |
N | 165 | T165I | aCA | aTT | 2 | 10 | B.1.177 | 0.000026 |
N | 165 | T165I | aCA | aTC | 1 | 10 | B.1.177 | 0.000013 |
N | 165 | T165H | ACA | CAC | 5 | 9 | All | 0.000001 |
N | 165 | T165H | ACA | CAT | 4 | 9 | All | 0.000001 |
N | 165 | T165del | ACA | --- | 9 | 9 | AY.107 | 0.004194 |
N | 165 | T165I | aCa | aTa | 8 | 8 | AY.26 | 0.000226 |
N | 165 | T165A | Aca | Gca | 8 | 8 | AY.39 | 0.000198 |
N | 165 | T165T | acA | acT | 4 | 8 | AY.43 | 0.000018 |
N | 165 | T165T | acA | acC | 2 | 8 | AY.43 | 0.000009 |
N | 165 | T165T | acA | acG | 2 | 8 | AY.43 | 0.000009 |
N | 165 | T165P | Aca | Cca | 6 | 8 | B.1 | 0.000055 |
N | 165 | T165P | AcA | CcT | 1 | 8 | B.1 | 0.000009 |
N | 165 | T165P | AcA | CcC | 1 | 8 | B.1 | 0.000009 |
N | 165 | T165A | Aca | Gca | 7 | 8 | B.1.1.7 | 0.000006 |
N | 165 | T165A | AcA | GcT | 1 | 8 | B.1.1.7 | 0.000001 |
N | 165 | T165I | aCa | aTa | 8 | 8 | B.1.369 | 0.002282 |
N | 165 | T165F | ACA | TTC | 4 | 7 | All | 0.000001 |
N | 165 | T165F | ACA | TTT | 3 | 7 | All | 0.000001 |
N | 165 | T165I | aCa | aTa | 7 | 7 | AY.102 | 0.000186 |
N | 165 | T165I | aCa | aTa | 7 | 7 | AY.33 | 0.000467 |
N | 165 | T165X | ACa | TAa | 7 | 7 | B.1 | 0.000064 |
N | 165 | T165N | aCA | aAC | 5 | 7 | B.1 | 0.000046 |
N | 165 | T165N | aCA | aAT | 2 | 7 | B.1 | 0.000018 |
N | 165 | T165K | aCa | aAa | 7 | 7 | B.1.177 | 0.000092 |
N | 165 | T165I | aCa | aTa | 7 | 7 | B.1.177.81 | 0.001325 |
N | 165 | T165T | acA | acG | 7 | 7 | B.1.551 | 0.009032 |
N | 165 | T165I | aCa | aTa | 6 | 6 | AY.29 | 0.000095 |
N | 165 | T165A | Aca | Gca | 4 | 6 | B.1 | 0.000037 |
N | 165 | T165A | AcA | GcC | 1 | 6 | B.1 | 0.000009 |
N | 165 | T165A | AcA | GcT | 1 | 6 | B.1 | 0.000009 |
N | 165 | T165N | aCA | aAC | 4 | 6 | B.1.177 | 0.000053 |
N | 165 | T165L | ACa | TTa | 3 | 6 | B.1.177 | 0.00004 |
N | 165 | T165N | aCA | aAT | 2 | 6 | B.1.177 | 0.000026 |
N | 165 | T165L | ACa | CTa | 1 | 6 | B.1.177 | 0.000013 |
N | 165 | T165L | ACA | CTT | 1 | 6 | B.1.177 | 0.000013 |
N | 165 | T165L | ACA | CTC | 1 | 6 | B.1.177 | 0.000013 |
N | 165 | T165del | ACA | --- | 6 | 6 | B.1.2 | 0.000053 |
N | 165 | T165I | aCa | aTa | 6 | 6 | B.1.429 | 0.000141 |
N | 165 | T165I | aCa | aTa | 5 | 5 | AY.39 | 0.000124 |
N | 165 | T165T | acA | acT | 4 | 5 | AY.5 | 0.000083 |
N | 165 | T165T | acA | acG | 1 | 5 | AY.5 | 0.000021 |
N | 165 | T165I | aCa | aTa | 5 | 5 | AY.9.1 | 0.000419 |
N | 165 | T165I | aCa | aTa | 5 | 5 | AY.99.2 | 0.000461 |
N | 165 | T165I | aCa | aTa | 5 | 5 | B.1.1 | 0.000091 |
N | 165 | T165S | Aca | Tca | 4 | 5 | B.1.1 | 0.000073 |
N | 165 | T165S | AcA | TcC | 1 | 5 | B.1.1 | 0.000018 |
N | 165 | T165H | ACA | CAC | 3 | 5 | B.1.177 | 0.00004 |
N | 165 | T165H | ACA | CAT | 2 | 5 | B.1.177 | 0.000026 |
N | 165 | T165T | acA | acG | 4 | 5 | B.1.429 | 0.000094 |
N | 165 | T165T | acA | acC | 1 | 5 | B.1.429 | 0.000024 |
N | 165 | T165A | Aca | Gca | 4 | 4 | AY.102 | 0.000106 |
N | 165 | T165I | aCa | aTa | 4 | 4 | AY.119 | 0.000141 |
N | 165 | T165del | ACA | --- | 4 | 4 | AY.25 | 0.000024 |
N | 165 | T165I | aCa | aTa | 4 | 4 | AY.35 | 0.000932 |
N | 165 | T165T | acA | acG | 4 | 4 | AY.36 | 0.000593 |
N | 165 | T165Q | ACa | CAa | 4 | 4 | B.1 | 0.000037 |
N | 165 | T165del | ACA | --- | 4 | 4 | B.1 | 0.000037 |
N | 165 | T165Y | ACA | TAC | 3 | 4 | B.1 | 0.000027 |
N | 165 | T165R | aCa | aGa | 3 | 4 | B.1 | 0.000027 |
N | 165 | T165R | ACa | CGa | 1 | 4 | B.1 | 0.000009 |
N | 165 | T165Y | ACA | TAT | 1 | 4 | B.1 | 0.000009 |
N | 165 | T165Q | ACa | CAa | 4 | 4 | B.1.177 | 0.000053 |
N | 165 | T165R | ACa | CGa | 1 | 4 | B.1.177 | 0.000013 |
N | 165 | T165R | aCa | aGa | 1 | 4 | B.1.177 | 0.000013 |
N | 165 | T165R | ACA | CGT | 1 | 4 | B.1.177 | 0.000013 |
N | 165 | T165R | ACA | CGC | 1 | 4 | B.1.177 | 0.000013 |
N | 165 | T165T | acA | acT | 3 | 4 | B.1.243 | 0.000209 |
N | 165 | T165T | acA | acG | 1 | 4 | B.1.243 | 0.00007 |
N | 165 | T165I | aCa | aTa | 4 | 4 | Q.8 | 0.00066 |
N | 165 | T165E | ACa | GAa | 3 | 3 | All | 0.000001 |
N | 165 | T165D | ACA | GAT | 2 | 3 | All | 0 |
N | 165 | T165D | ACA | GAC | 1 | 3 | All | 0 |
N | 165 | T165A | Aca | Gca | 3 | 3 | AY.25 | 0.000018 |
N | 165 | T165T | acA | acT | 2 | 3 | AY.26 | 0.000057 |
N | 165 | T165T | acA | acG | 1 | 3 | AY.26 | 0.000028 |
N | 165 | T165del | ACA | --- | 3 | 3 | AY.4.2 | 0.000065 |
N | 165 | T165I | aCa | aTa | 3 | 3 | AY.4.2 | 0.000065 |
N | 165 | T165T | acA | acG | 2 | 3 | AY.42 | 0.00008 |
N | 165 | T165T | acA | acT | 1 | 3 | AY.42 | 0.00004 |
N | 165 | T165A | Aca | Gca | 3 | 3 | AY.43 | 0.000013 |
N | 165 | T165I | aCa | aTa | 3 | 3 | AY.46 | 0.000312 |
N | 165 | T165T | acA | acT | 3 | 3 | AY.46.4 | 0.000494 |
N | 165 | T165del | ACA | --- | 3 | 3 | AY.46.6 | 0.000217 |
N | 165 | T165I | aCa | aTa | 3 | 3 | AY.7 | 0.000588 |
N | 165 | T165I | aCa | aTa | 3 | 3 | AY.76 | 0.014493 |
N | 165 | T165L | ACa | CTa | 2 | 3 | B.1 | 0.000018 |
N | 165 | T165L | ACa | TTa | 1 | 3 | B.1 | 0.000009 |
N | 165 | T165P | Aca | Cca | 3 | 3 | B.1.1 | 0.000054 |
N | 165 | T165T | acA | acG | 2 | 3 | B.1.1 | 0.000036 |
N | 165 | T165T | acA | acC | 1 | 3 | B.1.1 | 0.000018 |
N | 165 | T165S | Aca | Tca | 1 | 3 | B.1.1.1 | 0.000327 |
N | 165 | T165S | AcA | TcC | 1 | 3 | B.1.1.1 | 0.000327 |
N | 165 | T165S | aCA | aGC | 1 | 3 | B.1.1.1 | 0.000327 |
N | 165 | T165I | aCa | aTa | 3 | 3 | B.1.1.369 | 0.001339 |
N | 165 | T165del | ACA | --- | 3 | 3 | B.1.1.519 | 0.000119 |
N | 165 | T165K | aCa | aAa | 3 | 3 | B.1.1.7 | 0.000003 |
N | 165 | T165I | aCa | aTa | 3 | 3 | B.1.160 | 0.000094 |
N | 165 | T165I | aCa | aTa | 3 | 3 | B.1.160.16 | 0.002788 |
N | 165 | T165F | ACA | TTT | 2 | 3 | B.1.177 | 0.000026 |
N | 165 | T165Y | ACA | TAC | 2 | 3 | B.1.177 | 0.000026 |
N | 165 | T165F | ACA | TTC | 1 | 3 | B.1.177 | 0.000013 |
N | 165 | T165Y | ACA | TAT | 1 | 3 | B.1.177 | 0.000013 |
N | 165 | T165K | aCa | aAa | 3 | 3 | B.1.258 | 0.0002 |
N | 165 | T165S | Aca | Tca | 2 | 3 | B.1.258 | 0.000133 |
N | 165 | T165S | AcA | TcC | 1 | 3 | B.1.258 | 0.000067 |
N | 165 | T165I | aCa | aTa | 3 | 3 | B.1.351.5 | 0.001799 |
N | 165 | T165L | ACA | CTC | 1 | 3 | B.1.417 | 0.028571 |
N | 165 | T165L | ACa | TTa | 1 | 3 | B.1.417 | 0.028571 |
N | 165 | T165L | ACa | CTa | 1 | 3 | B.1.417 | 0.028571 |
N | 165 | T165I | aCa | aTa | 3 | 3 | B.1.596 | 0.000261 |
N | 165 | T165del | ACA | --- | 3 | 3 | B.1.596 | 0.000261 |
N | 165 | T165S | Aca | Tca | 2 | 3 | B.1.609 | 0.000959 |
N | 165 | T165S | AcA | TcC | 1 | 3 | B.1.609 | 0.000479 |
N | 165 | T165S | AcA | TcC | 1 | 2 | 0.055556 | |
N | 165 | T165S | Aca | Tca | 1 | 2 | 0.055556 | |
N | 165 | T165I | aCa | aTa | 2 | 2 | AD.2 | 0.000438 |
N | 165 | T165del1 | Aca | -ca | 1 | 2 | All | 0 |
N | 165 | T165del1 | ACA | -NN | 1 | 2 | All | 0 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AU.2 | 0.004843 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.1 | 0.000791 |
N | 165 | T165T | acA | acG | 2 | 2 | AY.102 | 0.000053 |
N | 165 | T165A | Aca | Gca | 2 | 2 | AY.103 | 0.000012 |
N | 165 | T165T | acA | acC | 1 | 2 | AY.119 | 0.000035 |
N | 165 | T165T | acA | acG | 1 | 2 | AY.119 | 0.000035 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.120 | 0.000074 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.13 | 0.000322 |
N | 165 | T165T | acA | acT | 2 | 2 | AY.29 | 0.000032 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.3.1 | 0.000171 |
N | 165 | T165A | Aca | Gca | 2 | 2 | AY.32 | 0.001065 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.39.1 | 0.000079 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.46.4 | 0.000329 |
N | 165 | T165A | Aca | Gca | 2 | 2 | AY.46.5 | 0.000397 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.70 | 0.000417 |
N | 165 | T165I | aCa | aTa | 2 | 2 | AY.74 | 0.000231 |
N | 165 | T165T | acA | acG | 2 | 2 | AY.98.1 | 0.000097 |
N | 165 | T165H | ACA | CAT | 1 | 2 | B.1 | 0.000009 |
N | 165 | T165D | ACA | GAC | 1 | 2 | B.1 | 0.000009 |
N | 165 | T165H | ACA | CAC | 1 | 2 | B.1 | 0.000009 |
N | 165 | T165D | ACA | GAT | 1 | 2 | B.1 | 0.000009 |
N | 165 | T165del | ACA | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 165 | T165X | ACa | TGa | 1 | 2 | B.1.1.1 | 0.000327 |
N | 165 | T165X | ACa | TAa | 1 | 2 | B.1.1.1 | 0.000327 |
N | 165 | T165del | ACA | --- | 2 | 2 | B.1.1.28 | 0.000622 |
N | 165 | T165T | acA | acT | 2 | 2 | B.1.1.306 | 0.000877 |
N | 165 | T165T | acA | acG | 2 | 2 | B.1.1.33 | 0.000842 |
N | 165 | T165T | acA | acT | 2 | 2 | B.1.1.348 | 0.001592 |
N | 165 | T165T | acA | acT | 2 | 2 | B.1.1.416 | 0.00181 |
N | 165 | T165del | ACA | --- | 2 | 2 | B.1.1.420 | 0.002012 |
N | 165 | T165N | aCA | aAT | 2 | 2 | B.1.1.7 | 0.000002 |
N | 165 | T165P | AcA | CcT | 1 | 2 | B.1.1.7 | 0.000001 |
N | 165 | T165P | Aca | Cca | 1 | 2 | B.1.1.7 | 0.000001 |
N | 165 | T165X | ACa | TAa | 2 | 2 | B.1.177 | 0.000026 |
N | 165 | T165del | ACA | --- | 2 | 2 | B.1.177 | 0.000026 |
N | 165 | T165T | acA | acT | 2 | 2 | B.1.177.81 | 0.000379 |
N | 165 | T165I | aCa | aTa | 2 | 2 | B.1.234 | 0.000264 |
N | 165 | T165X | ACa | TAa | 2 | 2 | B.1.258 | 0.000133 |
N | 165 | T165S | AcA | TcC | 1 | 2 | B.1.293 | 0.0125 |
N | 165 | T165I | aCa | aTa | 1 | 2 | B.1.293 | 0.0125 |
N | 165 | T165S | Aca | Tca | 1 | 2 | B.1.293 | 0.0125 |
N | 165 | T165I | aCA | aTC | 1 | 2 | B.1.293 | 0.0125 |
N | 165 | T165S | Aca | Tca | 2 | 2 | B.1.351 | 0.000059 |
N | 165 | T165S | Aca | Tca | 1 | 2 | B.1.417 | 0.028571 |
N | 165 | T165I | aCa | aTa | 1 | 2 | B.1.417 | 0.028571 |
N | 165 | T165I | aCA | aTC | 1 | 2 | B.1.417 | 0.028571 |
N | 165 | T165S | AcA | TcC | 1 | 2 | B.1.417 | 0.028571 |
N | 165 | T165P | AcA | CcC | 1 | 2 | B.1.417 | 0.028571 |
N | 165 | T165P | Aca | Cca | 1 | 2 | B.1.417 | 0.028571 |
N | 165 | T165I | aCa | aTa | 2 | 2 | B.1.438.1 | 0.000215 |
N | 165 | T165T | acA | acT | 2 | 2 | B.1.466.2 | 0.000782 |
N | 165 | T165del | ACA | --- | 2 | 2 | B.1.489 | 0.086957 |
N | 165 | T165I | aCa | aTa | 2 | 2 | B.1.525 | 0.000226 |
N | 165 | T165del | ACA | --- | 2 | 2 | B.1.525 | 0.000226 |
N | 165 | T165K | aCa | aAa | 1 | 2 | B.1.576 | 0.000907 |
N | 165 | T165K | aCA | aAG | 1 | 2 | B.1.576 | 0.000907 |
N | 165 | T165K | aCa | aAa | 2 | 2 | B.1.609 | 0.000959 |
N | 165 | T165I | aCA | aTC | 1 | 2 | B.1.78 | 0.008547 |
N | 165 | T165S | Aca | Tca | 1 | 2 | B.1.78 | 0.008547 |
N | 165 | T165S | AcA | TcC | 1 | 2 | B.1.78 | 0.008547 |
N | 165 | T165I | aCa | aTa | 1 | 2 | B.1.78 | 0.008547 |
N | 165 | T165T | acA | acG | 2 | 2 | C.35 | 0.001548 |
N | 165 | T165T | acA | acT | 2 | 2 | C.37 | 0.000232 |
N | 165 | T165I | aCa | aTa | 2 | 2 | C.37.1 | 0.005236 |
N | 165 | T165I | aCa | aTa | 2 | 2 | D.2 | 0.00015 |
N | 165 | T165T | acA | acT | 1 | 2 | D.2 | 0.000075 |
N | 165 | T165T | acA | acG | 1 | 2 | D.2 | 0.000075 |
N | 165 | T165del | ACA | --- | 2 | 2 | P.1 | 0.000032 |
N | 165 | T165I | aCa | aTa | 2 | 2 | P.1.14 | 0.000096 |
N | 165 | T165A | Aca | Gca | 2 | 2 | P.1.14 | 0.000096 |
N | 165 | T165T | acA | acT | 2 | 2 | P.2 | 0.000373 |
N | 165 | T165I | aCa | aTa | 2 | 2 | R.1 | 0.00018 |
N | 165 | T165I | aCa | aTa | 2 | 2 | U.3 | 0.007722 |
N | 165 | T165T | acA | acC | 1 | 1 | 0.055556 | |
N | 165 | T165P | Aca | Cca | 1 | 1 | 0.055556 | |
N | 165 | T165I | aCa | aTa | 1 | 1 | A | 0.000387 |
N | 165 | T165I | aCa | aTa | 1 | 1 | A.2.4 | 0.003367 |
N | 165 | T165T | acA | acG | 1 | 1 | A.27 | 0.001656 |
N | 165 | T165I | aCa | aTa | 1 | 1 | A.28 | 0.002646 |
N | 165 | T165del2 | ACa | --a | 1 | 1 | All | 0 |
N | 165 | T165C | ACA | TGC | 1 | 1 | All | 0 |
N | 165 | T165A | Aca | Gca | 1 | 1 | AY.100 | 0.000046 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.105 | 0.000643 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.106 | 0.000335 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.110 | 0.000113 |
N | 165 | T165A | Aca | Gca | 1 | 1 | AY.114 | 0.000231 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.117 | 0.000085 |
N | 165 | T165T | acA | acG | 1 | 1 | AY.118 | 0.000063 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.120 | 0.000037 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.121 | 0.000135 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.121 | 0.000135 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.13 | 0.000161 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.16.1 | 0.00047 |
N | 165 | T165P | AcA | CcG | 1 | 1 | AY.18 | 0.010101 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.20 | 0.000039 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.23 | 0.00007 |
N | 165 | T165S | Aca | Tca | 1 | 1 | AY.25 | 0.000006 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.27 | 0.000065 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.29.1 | 0.000221 |
N | 165 | T165del | ACA | --- | 1 | 1 | AY.3 | 0.00001 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.32 | 0.000532 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.34 | 0.000097 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.37 | 0.000316 |
N | 165 | T165T | acA | acG | 1 | 1 | AY.39 | 0.000025 |
N | 165 | T165del | ACA | --- | 1 | 1 | AY.4 | 0.000002 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 165 | T165A | Aca | Gca | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.4.4 | 0.000409 |
N | 165 | T165del | ACA | --- | 1 | 1 | AY.40 | 0.000964 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.42 | 0.00004 |
N | 165 | T165del | ACA | --- | 1 | 1 | AY.42 | 0.00004 |
N | 165 | T165del | ACA | --- | 1 | 1 | AY.43 | 0.000004 |
N | 165 | T165T | acA | acG | 1 | 1 | AY.45 | 0.000122 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.46 | 0.000104 |
N | 165 | T165S | Aca | Tca | 1 | 1 | AY.46.6 | 0.000072 |
N | 165 | T165A | Aca | Gca | 1 | 1 | AY.5 | 0.000021 |
N | 165 | T165del | ACA | --- | 1 | 1 | AY.50 | 0.000799 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.53 | 0.000288 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.54 | 0.000095 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.6 | 0.000041 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.68 | 0.000274 |
N | 165 | T165del | ACA | --- | 1 | 1 | AY.75 | 0.000056 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.75.1 | 0.00018 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.9.2 | 0.000037 |
N | 165 | T165T | acA | acG | 1 | 1 | AY.90 | 0.000684 |
N | 165 | T165T | acA | acT | 1 | 1 | AY.91 | 0.00073 |
N | 165 | T165T | acA | acG | 1 | 1 | AY.92 | 0.000287 |
N | 165 | T165A | Aca | Gca | 1 | 1 | AY.92 | 0.000287 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.93 | 0.000273 |
N | 165 | T165A | Aca | Gca | 1 | 1 | AY.98 | 0.000079 |
N | 165 | T165I | aCa | aTa | 1 | 1 | AY.98 | 0.000079 |
N | 165 | T165T | acA | acG | 1 | 1 | AY.99.2 | 0.000092 |
N | 165 | T165P | Aca | Cca | 1 | 1 | B | 0.000128 |
N | 165 | T165E | ACa | GAa | 1 | 1 | B.1 | 0.000009 |
N | 165 | T165F | ACA | TTT | 1 | 1 | B.1 | 0.000009 |
N | 165 | T165L | ACa | CTa | 1 | 1 | B.1.1 | 0.000018 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.1 | 0.000018 |
N | 165 | T165X | ACa | TAa | 1 | 1 | B.1.1 | 0.000018 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.1.1 | 0.000327 |
N | 165 | T165R | aCa | aGa | 1 | 1 | B.1.1.1 | 0.000327 |
N | 165 | T165N | aCA | aAC | 1 | 1 | B.1.1.1 | 0.000327 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.1.1 | 0.000327 |
N | 165 | T165Y | ACA | TAC | 1 | 1 | B.1.1.1 | 0.000327 |
N | 165 | T165C | ACA | TGC | 1 | 1 | B.1.1.1 | 0.000327 |
N | 165 | T165P | Aca | Cca | 1 | 1 | B.1.1.170 | 0.001247 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.1.214 | 0.000055 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.1.222 | 0.000204 |
N | 165 | T165P | Aca | Cca | 1 | 1 | B.1.1.277 | 0.000759 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.1.277 | 0.000759 |
N | 165 | T165Q | ACa | CAa | 1 | 1 | B.1.1.277 | 0.000759 |
N | 165 | T165S | Aca | Tca | 1 | 1 | B.1.1.277 | 0.000759 |
N | 165 | T165X | ACa | TAa | 1 | 1 | B.1.1.277 | 0.000759 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.1.33 | 0.000421 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.1.351 | 0.002793 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.1.369 | 0.000446 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.1.44 | 0.00241 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.1.448 | 0.002033 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.1.462 | 0.008621 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.1.487 | 0.005587 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.1.523 | 0.001563 |
N | 165 | T165R | aCa | aGa | 1 | 1 | B.1.1.7 | 0.000001 |
N | 165 | T165D | ACA | GAT | 1 | 1 | B.1.1.7 | 0.000001 |
N | 165 | T165H | ACA | CAT | 1 | 1 | B.1.1.7 | 0.000001 |
N | 165 | T165E | ACa | GAa | 1 | 1 | B.1.1.7 | 0.000001 |
N | 165 | T165Q | ACa | CAa | 1 | 1 | B.1.1.7 | 0.000001 |
N | 165 | T165E | ACa | GAa | 1 | 1 | B.1.112 | 0.005181 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.160 | 0.000031 |
N | 165 | T165P | Aca | Cca | 1 | 1 | B.1.160 | 0.000031 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.160 | 0.000031 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.160 | 0.000031 |
N | 165 | T165del1 | ACA | -NN | 1 | 1 | B.1.177 | 0.000013 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.177.4 | 0.000211 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.177.4 | 0.000211 |
N | 165 | T165S | Aca | Tca | 1 | 1 | B.1.177.50 | 0.004695 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.177.57 | 0.000281 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.177.62 | 0.001192 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.177.68 | 0.015152 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.177.77 | 0.000726 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.177.86 | 0.000183 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.177.86 | 0.000183 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.177.86 | 0.000183 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.2 | 0.000009 |
N | 165 | T165P | Aca | Cca | 1 | 1 | B.1.2 | 0.000009 |
N | 165 | T165Q | ACa | CAa | 1 | 1 | B.1.2 | 0.000009 |
N | 165 | T165L | ACa | CTa | 1 | 1 | B.1.2 | 0.000009 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.2 | 0.000009 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.218 | 0.005155 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.221 | 0.000071 |
N | 165 | T165N | aCA | aAC | 1 | 1 | B.1.221 | 0.000071 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.221 | 0.000071 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.221 | 0.000071 |
N | 165 | T165Y | ACA | TAC | 1 | 1 | B.1.258 | 0.000067 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.258 | 0.000067 |
N | 165 | T165N | aCA | aAC | 1 | 1 | B.1.258 | 0.000067 |
N | 165 | T165L | ACa | TTa | 1 | 1 | B.1.258 | 0.000067 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.258 | 0.000067 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.258.17 | 0.000104 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.264 | 0.012346 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.284 | 0.013158 |
N | 165 | T165P | Aca | Cca | 1 | 1 | B.1.284 | 0.013158 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.293 | 0.0125 |
N | 165 | T165X | ACa | TAa | 1 | 1 | B.1.293 | 0.0125 |
N | 165 | T165N | aCA | aAC | 1 | 1 | B.1.293 | 0.0125 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.293 | 0.0125 |
N | 165 | T165F | ACA | TTC | 1 | 1 | B.1.293 | 0.0125 |
N | 165 | T165L | ACa | TTa | 1 | 1 | B.1.293 | 0.0125 |
N | 165 | T165Y | ACA | TAC | 1 | 1 | B.1.293 | 0.0125 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.351 | 0.00003 |
N | 165 | T165L | ACa | TTa | 1 | 1 | B.1.351 | 0.00003 |
N | 165 | T165R | aCa | aGa | 1 | 1 | B.1.36 | 0.000146 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.36 | 0.000146 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.36.1 | 0.00114 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.36.17 | 0.000494 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.36.29 | 0.000517 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.36.29 | 0.000517 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.36.29 | 0.000517 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.36.36 | 0.000602 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.36.8 | 0.001 |
N | 165 | T165H | ACA | CAC | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165F | ACA | TTC | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165N | aCA | aAC | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165Y | ACA | TAC | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165X | ACa | TAa | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165Q | ACa | CAa | 1 | 1 | B.1.417 | 0.028571 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.427 | 0.00005 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 165 | T165S | Aca | Tca | 1 | 1 | B.1.525 | 0.000113 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.538 | 0.008065 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.574 | 0.002151 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.576 | 0.000907 |
N | 165 | T165T | acA | acG | 1 | 1 | B.1.596 | 0.000087 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.609 | 0.000479 |
N | 165 | T165X | ACa | TAa | 1 | 1 | B.1.609 | 0.000479 |
N | 165 | T165Y | ACA | TAC | 1 | 1 | B.1.609 | 0.000479 |
N | 165 | T165N | aCA | aAC | 1 | 1 | B.1.609 | 0.000479 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.609 | 0.000479 |
N | 165 | T165L | ACa | TTa | 1 | 1 | B.1.609 | 0.000479 |
N | 165 | T165del1 | Aca | -ca | 1 | 1 | B.1.617.2 | 0.000004 |
N | 165 | T165del2 | ACa | --a | 1 | 1 | B.1.617.2 | 0.000004 |
N | 165 | T165del | ACA | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 165 | T165A | Aca | Gca | 1 | 1 | B.1.621 | 0.000089 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.1.631 | 0.003367 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.637 | 0.000073 |
N | 165 | T165T | acA | acT | 1 | 1 | B.1.76 | 0.011364 |
N | 165 | T165K | aCa | aAa | 1 | 1 | B.1.78 | 0.008547 |
N | 165 | T165X | ACa | TAa | 1 | 1 | B.1.78 | 0.008547 |
N | 165 | T165L | ACa | TTa | 1 | 1 | B.1.78 | 0.008547 |
N | 165 | T165N | aCA | aAC | 1 | 1 | B.1.78 | 0.008547 |
N | 165 | T165T | acA | acC | 1 | 1 | B.1.78 | 0.008547 |
N | 165 | T165Y | ACA | TAC | 1 | 1 | B.1.78 | 0.008547 |
N | 165 | T165F | ACA | TTC | 1 | 1 | B.1.78 | 0.008547 |
N | 165 | T165T | acA | acC | 1 | 1 | B.3 | 0.000831 |
N | 165 | T165T | acA | acT | 1 | 1 | B.6 | 0.00091 |
N | 165 | T165I | aCa | aTa | 1 | 1 | B.6 | 0.00091 |
N | 165 | T165I | aCa | aTa | 1 | 1 | C.37 | 0.000116 |
N | 165 | T165I | aCa | aTa | 1 | 1 | N.5 | 0.001767 |
N | 165 | T165T | acA | acG | 1 | 1 | P.1 | 0.000016 |
N | 165 | T165I | aCa | aTa | 1 | 1 | P.1.11 | 0.010204 |
N | 165 | T165T | acA | acT | 1 | 1 | P.1.14 | 0.000048 |
N | 165 | T165I | aCa | aTa | 1 | 1 | P.1.15 | 0.000232 |
N | 165 | T165I | aCa | aTa | 1 | 1 | Q.1 | 0.000126 |
N | 165 | T165I | aCa | aTa | 1 | 1 | Q.4 | 0.000455 |
N | 165 | T165I | aCa | aTa | 1 | 1 | Q.7 | 0.001111 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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