CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 162 & Codon = ccA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N162P162PsynccTccA55924580.081902728757-28759

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N162P162PccTccA4585592All0.000088
N162P162PccTccA1323AY.440.000006
N162P162PccTccA251313B.1.1.70.000225
N162P162PccTccA24232AY.40.000037
N162P162PccTccA43210B.10.000394
N162P162PccTccA1126AY.1030.000006
N162P162PccTccA1589B.1.617.20.000056
N162P162PccTccA1380B.1.1770.000171
N162P162PccTccA1070B.1.10.000181
N162P162PccTccA533B.1.20.000044
N162P162PccTccA2830AY.4.20.000607
N162P162PccTccA224B.1.2210.000142
N162P162PccTccA522AY.1000.00023
N162P162PccTccA421B.1.1600.000125
N162P162PccTccA120AY.430.000004
N162P162PccTccA815AY.250.000048
N162P162PccTccA115AY.30.00001
N162P162PccTccA713B.1.2580.000466
N162P162PccTccA29B.1.177.440.001038
N162P162PccTccA27B.1.1.390.001019
N162P162PccTccA36B.1.5960.000261
N162P162PccTccA15AY.1020.000027
N162P162PccTccA25B.1.1.3850.008929
N162P162PccTccA14B.1.1.1890.001513
N162P162PccTccA24B.1.1.3720.001377
N162P162PccTccA130.055556
N162P162PccTccA33AY.470.000093
N162P162PccTccA23B.1.1.1700.002494
N162P162PccTccA13B.1.258.110.000396
N162P162PccTccA12AY.1190.000035
N162P162PccTccA12AY.1200.000037
N162P162PccTccA12AY.3.10.000085
N162P162PccTccA12B.1.1.3010.001179
N162P162PccTccA12B.1.1.5150.02
N162P162PccTccA12B.1.2930.0125
N162P162PccTccA12B.1.3890.001002
N162P162PccTccA12B.1.6090.000479
N162P162PccTccA12B.1.780.008547
N162P162PccTccA12P.20.000187
N162P162PccTccA11AY.190.00114
N162P162PccTccA11AY.710.000475
N162P162PccTccA11B.1.1.1930.111111
N162P162PccTccA11B.1.1.2770.000759
N162P162PccTccA11B.1.177.330.001645
N162P162PccTccA11B.1.2840.013158
N162P162PccTccA11B.1.5760.000907
N162P162PccTccA11B.1.6180.004032
N162P162PccTccA11B.1.830.015385

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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