CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 162 & Codon = cAC

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N162P162HnonsyncCTcAC287590.20557528757-28759

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N162P162HcCTcAC59287All0.000011
N162P162HcCTcAC2464B.10.00022
N162P162HcCTcAC921B.1.1770.000119
N162P162HcCTcAC311B.1.10.000054
N162P162HcCTcAC19B.1.5250.000113
N162P162HcCTcAC27B.1.20.000018
N162P162HcCTcAC37B.1.2580.0002
N162P162HcCTcAC25B.1.177.440.001038
N162P162HcCTcAC24B.1.1.390.001019
N162P162HcCTcAC24B.1.2210.000142
N162P162HcCTcAC13B.1.1600.000031
N162P162HcCTcAC120.055556
N162P162HcCTcAC12B.1.1.1700.001247
N162P162HcCTcAC12B.1.1.3010.001179
N162P162HcCTcAC12B.1.1.5150.02
N162P162HcCTcAC12B.1.177.500.004695
N162P162HcCTcAC12B.1.177.770.000726
N162P162HcCTcAC12B.1.177.860.000183
N162P162HcCTcAC12B.1.2930.0125
N162P162HcCTcAC12B.1.780.008547
N162P162HcCTcAC12C.300.001727

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.