CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 162

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	162	P162P		syn	ccT	ccC	5592	4955	0.886087	28757-28759
N	162	P162P		syn	ccT	ccA	5592	458	0.0819027	28757-28759
N	162	P162P		syn	ccT	ccG	5592	179	0.03201	28757-28759
N	162	P162S		nonsyn	Cct	Tct	1136	889	0.78257	28757-28759
N	162	P162S		nonsyn	CcT	TcC	1136	121	0.106514	28757-28759
N	162	P162S		nonsyn	CcT	TcA	1136	96	0.084507	28757-28759
N	162	P162S		nonsyn	CcT	TcG	1136	21	0.0184859	28757-28759
N	162	P162S		nonsyn	CCt	AGt	1136	5	0.00440141	28757-28759
N	162	P162S		nonsyn	CCT	AGC	1136	4	0.00352113	28757-28759
N	162	P162L		nonsyn	cCt	cTt	1013	702	0.692991	28757-28759
N	162	P162L		nonsyn	cCT	cTC	1013	102	0.100691	28757-28759
N	162	P162L		nonsyn	CCT	TTA	1013	85	0.0839092	28757-28759
N	162	P162L		nonsyn	cCT	cTA	1013	84	0.082922	28757-28759
N	162	P162L		nonsyn	cCT	cTG	1013	21	0.0207305	28757-28759
N	162	P162L		nonsyn	CCT	TTG	1013	19	0.0187562	28757-28759
N	162	P162F		nonsyn	CCt	TTt	290	190	0.655172	28757-28759
N	162	P162F		nonsyn	CCT	TTC	290	100	0.344828	28757-28759
N	162	P162H		nonsyn	cCt	cAt	287	228	0.794425	28757-28759
N	162	P162H		nonsyn	cCT	cAC	287	59	0.205575	28757-28759
N	162	P162T		nonsyn	Cct	Act	195	97	0.497436	28757-28759
N	162	P162T		nonsyn	CcT	AcC	195	46	0.235897	28757-28759
N	162	P162T		nonsyn	CcT	AcA	195	43	0.220513	28757-28759
N	162	P162T		nonsyn	CcT	AcG	195	9	0.0461538	28757-28759
N	162	P162I		nonsyn	CCt	ATt	142	59	0.415493	28757-28759
N	162	P162I		nonsyn	CCT	ATC	142	43	0.302817	28757-28759
N	162	P162I		nonsyn	CCT	ATA	142	40	0.28169	28757-28759
N	162	P162Y		nonsyn	CCt	TAt	135	79	0.585185	28757-28759
N	162	P162Y		nonsyn	CCT	TAC	135	56	0.414815	28757-28759
N	162	P162N		nonsyn	CCt	AAt	74	42	0.567568	28757-28759
N	162	P162N		nonsyn	CCT	AAC	74	32	0.432432	28757-28759
N	162	P162X		nonsyn	CCT	TAA	63	49	0.777778	28757-28759
N	162	P162X		nonsyn	CCT	TAG	63	7	0.111111	28757-28759
N	162	P162X		nonsyn	CCT	TGA	63	7	0.111111	28757-28759
N	162	P162Q		nonsyn	cCT	cAA	59	50	0.847458	28757-28759
N	162	P162Q		nonsyn	cCT	cAG	59	9	0.152542	28757-28759
N	162	P162R		nonsyn	cCt	cGt	54	22	0.407407	28757-28759
N	162	P162R		nonsyn	cCT	cGC	54	14	0.259259	28757-28759
N	162	P162R		nonsyn	cCT	cGA	54	10	0.185185	28757-28759
N	162	P162R		nonsyn	CCT	AGA	54	6	0.111111	28757-28759
N	162	P162R		nonsyn	cCT	cGG	54	1	0.0185185	28757-28759
N	162	P162R		nonsyn	CCT	AGG	54	1	0.0185185	28757-28759
N	162	P162del		del	CCT	---	48	48	1	28757-28759
N	162	P162K		nonsyn	CCT	AAA	34	28	0.823529	28757-28759
N	162	P162K		nonsyn	CCT	AAG	34	6	0.176471	28757-28759
N	162	P162A		nonsyn	Cct	Gct	33	22	0.666667	28757-28759
N	162	P162A		nonsyn	CcT	GcC	33	4	0.121212	28757-28759
N	162	P162A		nonsyn	CcT	GcA	33	4	0.121212	28757-28759
N	162	P162A		nonsyn	CcT	GcG	33	3	0.0909091	28757-28759
N	162	P162C		nonsyn	CCt	TGt	30	17	0.566667	28757-28759
N	162	P162C		nonsyn	CCT	TGC	30	13	0.433333	28757-28759
N	162	P162V		nonsyn	CCt	GTt	17	6	0.352941	28757-28759
N	162	P162V		nonsyn	CCT	GTC	17	4	0.235294	28757-28759
N	162	P162V		nonsyn	CCT	GTA	17	4	0.235294	28757-28759
N	162	P162V		nonsyn	CCT	GTG	17	3	0.176471	28757-28759
N	162	P162del1		del	ccT	cc-	8	5	0.625	28757-28759
N	162	P162del1		del	Cct	-ct	8	2	0.25	28757-28759
N	162	P162del1		del	CCt	-Nt	8	1	0.125	28757-28759
N	162	P162M		nonsyn	CCT	ATG	7	7	1	28757-28759
N	162	P162del2		del	CCT	--G	3	2	0.666667	28757-28759
N	162	P162D		nonsyn	CCt	GAt	3	2	0.666667	28757-28759
N	162	P162D		nonsyn	CCT	GAC	3	1	0.333333	28757-28759
N	162	P162del2		del	CCt	--t	3	1	0.333333	28757-28759
N	162	P162G		nonsyn	CCt	GGt	3	1	0.333333	28757-28759
N	162	P162G		nonsyn	CCT	GGC	3	1	0.333333	28757-28759
N	162	P162G		nonsyn	CCT	GGA	3	1	0.333333	28757-28759
N	162	P162E		nonsyn	CCT	GAG	2	1	0.5	28757-28759
N	162	P162E		nonsyn	CCT	GAA	2	1	0.5	28757-28759
N	162	P162W		nonsyn	CCT	TGG	1	1	1	28757-28759

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	162	P162P	ccT	ccC	4955	5592	All	0.000948
N	162	P162P	ccT	ccA	458	5592	All	0.000088
N	162	P162P	ccT	ccG	179	5592	All	0.000034
N	162	P162P	ccT	ccC	2807	2807	B.1.1.70	0.957367
N	162	P162S	Cct	Tct	889	1136	All	0.00017
N	162	P162S	CcT	TcC	121	1136	All	0.000023
N	162	P162S	CcT	TcA	96	1136	All	0.000018
N	162	P162S	CcT	TcG	21	1136	All	0.000004
N	162	P162S	CCt	AGt	5	1136	All	0.000001
N	162	P162S	CCT	AGC	4	1136	All	0.000001
N	162	P162L	cCt	cTt	702	1013	All	0.000134
N	162	P162L	cCT	cTC	102	1013	All	0.00002
N	162	P162L	CCT	TTA	85	1013	All	0.000016
N	162	P162L	cCT	cTA	84	1013	All	0.000016
N	162	P162L	cCT	cTG	21	1013	All	0.000004
N	162	P162L	CCT	TTG	19	1013	All	0.000004
N	162	P162P	ccT	ccC	665	665	AP.1	0.998498
N	162	P162P	ccT	ccC	240	323	AY.44	0.001461
N	162	P162P	ccT	ccG	82	323	AY.44	0.000499
N	162	P162P	ccT	ccA	1	323	AY.44	0.000006
N	162	P162P	ccT	ccA	251	313	B.1.1.7	0.000225
N	162	P162P	ccT	ccC	46	313	B.1.1.7	0.000041
N	162	P162P	ccT	ccG	16	313	B.1.1.7	0.000014
N	162	P162F	CCt	TTt	190	290	All	0.000036
N	162	P162F	CCT	TTC	100	290	All	0.000019
N	162	P162H	cCt	cAt	228	287	All	0.000044
N	162	P162H	cCT	cAC	59	287	All	0.000011
N	162	P162S	Cct	Tct	236	238	B.1.1.7	0.000211
N	162	P162S	CcT	TcA	1	238	B.1.1.7	0.000001
N	162	P162S	CCt	AGt	1	238	B.1.1.7	0.000001
N	162	P162L	cCt	cTt	90	235	B.1	0.000824
N	162	P162L	cCT	cTC	51	235	B.1	0.000467
N	162	P162L	cCT	cTA	35	235	B.1	0.000321
N	162	P162L	CCT	TTA	35	235	B.1	0.000321
N	162	P162L	CCT	TTG	12	235	B.1	0.00011
N	162	P162L	cCT	cTG	12	235	B.1	0.00011
N	162	P162P	ccT	ccC	205	232	AY.4	0.000319
N	162	P162P	ccT	ccA	24	232	AY.4	0.000037
N	162	P162P	ccT	ccG	3	232	AY.4	0.000005
N	162	P162S	Cct	Tct	106	215	B.1	0.000971
N	162	P162S	CcT	TcC	55	215	B.1	0.000504
N	162	P162S	CcT	TcA	37	215	B.1	0.000339
N	162	P162S	CcT	TcG	13	215	B.1	0.000119
N	162	P162S	CCT	AGC	2	215	B.1	0.000018
N	162	P162S	CCt	AGt	2	215	B.1	0.000018
N	162	P162P	ccT	ccC	154	210	B.1	0.001411
N	162	P162P	ccT	ccA	43	210	B.1	0.000394
N	162	P162P	ccT	ccG	13	210	B.1	0.000119
N	162	P162T	Cct	Act	97	195	All	0.000019
N	162	P162T	CcT	AcC	46	195	All	0.000009
N	162	P162T	CcT	AcA	43	195	All	0.000008
N	162	P162T	CcT	AcG	9	195	All	0.000002
N	162	P162I	CCt	ATt	59	142	All	0.000011
N	162	P162I	CCT	ATC	43	142	All	0.000008
N	162	P162I	CCT	ATA	40	142	All	0.000008
N	162	P162Y	CCt	TAt	79	135	All	0.000015
N	162	P162Y	CCT	TAC	56	135	All	0.000011
N	162	P162F	CCt	TTt	79	129	B.1	0.000724
N	162	P162F	CCT	TTC	50	129	B.1	0.000458
N	162	P162P	ccT	ccC	124	126	AY.103	0.00077
N	162	P162P	ccT	ccG	1	126	AY.103	0.000006
N	162	P162P	ccT	ccA	1	126	AY.103	0.000006
N	162	P162L	cCt	cTt	115	116	B.1.1.7	0.000103
N	162	P162L	CCT	TTA	1	116	B.1.1.7	0.000001
N	162	P162P	ccT	ccC	110	110	AY.94	0.048694
N	162	P162S	Cct	Tct	62	93	B.1.177	0.000816
N	162	P162S	CcT	TcC	15	93	B.1.177	0.000198
N	162	P162S	CcT	TcA	13	93	B.1.177	0.000171
N	162	P162S	CcT	TcG	1	93	B.1.177	0.000013
N	162	P162S	CCT	AGC	1	93	B.1.177	0.000013
N	162	P162S	CCt	AGt	1	93	B.1.177	0.000013
N	162	P162P	ccT	ccC	73	89	B.1.617.2	0.000275
N	162	P162P	ccT	ccA	15	89	B.1.617.2	0.000056
N	162	P162P	ccT	ccG	1	89	B.1.617.2	0.000004
N	162	P162P	ccT	ccC	65	80	B.1.177	0.000856
N	162	P162P	ccT	ccA	13	80	B.1.177	0.000171
N	162	P162P	ccT	ccG	2	80	B.1.177	0.000026
N	162	P162N	CCt	AAt	42	74	All	0.000008
N	162	P162N	CCT	AAC	32	74	All	0.000006
N	162	P162T	Cct	Act	31	73	B.1	0.000284
N	162	P162T	CcT	AcC	21	73	B.1	0.000192
N	162	P162T	CcT	AcA	16	73	B.1	0.000147
N	162	P162T	CcT	AcG	5	73	B.1	0.000046
N	162	P162L	cCt	cTt	71	71	AY.4	0.000111
N	162	P162P	ccT	ccC	54	70	B.1.1	0.00098
N	162	P162P	ccT	ccA	10	70	B.1.1	0.000181
N	162	P162P	ccT	ccG	6	70	B.1.1	0.000109
N	162	P162H	cCt	cAt	40	64	B.1	0.000366
N	162	P162H	cCT	cAC	24	64	B.1	0.00022
N	162	P162X	CCT	TAA	49	63	All	0.000009
N	162	P162X	CCT	TAG	7	63	All	0.000001
N	162	P162X	CCT	TGA	7	63	All	0.000001
N	162	P162I	CCt	ATt	27	62	B.1	0.000247
N	162	P162I	CCT	ATC	20	62	B.1	0.000183
N	162	P162I	CCT	ATA	15	62	B.1	0.000137
N	162	P162L	cCt	cTt	23	62	B.1.177	0.000303
N	162	P162L	cCT	cTC	12	62	B.1.177	0.000158
N	162	P162L	cCT	cTA	12	62	B.1.177	0.000158
N	162	P162L	CCT	TTA	12	62	B.1.177	0.000158
N	162	P162L	cCT	cTG	2	62	B.1.177	0.000026
N	162	P162L	CCT	TTG	1	62	B.1.177	0.000013
N	162	P162S	Cct	Tct	39	61	B.1.1	0.000707
N	162	P162S	CcT	TcC	10	61	B.1.1	0.000181
N	162	P162S	CcT	TcA	9	61	B.1.1	0.000163
N	162	P162S	CcT	TcG	3	61	B.1.1	0.000054
N	162	P162Q	cCT	cAA	50	59	All	0.00001
N	162	P162Q	cCT	cAG	9	59	All	0.000002
N	162	P162Y	CCt	TAt	34	58	B.1	0.000311
N	162	P162Y	CCT	TAC	24	58	B.1	0.00022
N	162	P162L	cCt	cTt	30	58	B.1.1	0.000544
N	162	P162L	CCT	TTA	7	58	B.1.1	0.000127
N	162	P162L	cCT	cTC	7	58	B.1.1	0.000127
N	162	P162L	cCT	cTA	7	58	B.1.1	0.000127
N	162	P162L	cCT	cTG	4	58	B.1.1	0.000073
N	162	P162L	CCT	TTG	3	58	B.1.1	0.000054
N	162	P162R	cCt	cGt	22	54	All	0.000004
N	162	P162R	cCT	cGC	14	54	All	0.000003
N	162	P162R	cCT	cGA	10	54	All	0.000002
N	162	P162R	CCT	AGA	6	54	All	0.000001
N	162	P162R	CCT	AGG	1	54	All	0
N	162	P162R	cCT	cGG	1	54	All	0
N	162	P162S	Cct	Tct	54	54	AY.4	0.000084
N	162	P162P	ccT	ccC	51	51	AY.99.2	0.0047
N	162	P162del	CCT	---	48	48	All	0.000009
N	162	P162H	cCt	cAt	48	48	B.1.1.7	0.000043
N	162	P162S	Cct	Tct	37	37	AY.44	0.000225
N	162	P162K	CCT	AAA	28	34	All	0.000005
N	162	P162K	CCT	AAG	6	34	All	0.000001
N	162	P162A	Cct	Gct	22	33	All	0.000004
N	162	P162A	CcT	GcC	4	33	All	0.000001
N	162	P162A	CcT	GcA	4	33	All	0.000001
N	162	P162A	CcT	GcG	3	33	All	0.000001
N	162	P162L	cCt	cTt	33	33	AY.47	0.001026
N	162	P162P	ccT	ccC	22	33	B.1.2	0.000194
N	162	P162P	ccT	ccG	6	33	B.1.2	0.000053
N	162	P162P	ccT	ccA	5	33	B.1.2	0.000044
N	162	P162L	cCt	cTt	22	33	B.1.258	0.001464
N	162	P162L	cCT	cTC	5	33	B.1.258	0.000333
N	162	P162L	cCT	cTA	3	33	B.1.258	0.0002
N	162	P162L	CCT	TTA	3	33	B.1.258	0.0002
N	162	P162F	CCt	TTt	20	32	B.1.177	0.000263
N	162	P162F	CCT	TTC	12	32	B.1.177	0.000158
N	162	P162C	CCt	TGt	17	30	All	0.000003
N	162	P162C	CCT	TGC	13	30	All	0.000002
N	162	P162P	ccT	ccA	28	30	AY.4.2	0.000607
N	162	P162P	ccT	ccG	2	30	AY.4.2	0.000043
N	162	P162N	CCt	AAt	18	30	B.1	0.000165
N	162	P162N	CCT	AAC	12	30	B.1	0.00011
N	162	P162X	CCT	TAA	18	29	B.1	0.000165
N	162	P162X	CCT	TAG	7	29	B.1	0.000064
N	162	P162X	CCT	TGA	4	29	B.1	0.000037
N	162	P162F	CCt	TTt	20	27	B.1.1	0.000363
N	162	P162F	CCT	TTC	7	27	B.1.1	0.000127
N	162	P162L	cCt	cTt	26	26	AY.25	0.000156
N	162	P162P	ccT	ccC	25	25	AY.9.2	0.000918
N	162	P162Q	cCT	cAA	18	25	B.1	0.000165
N	162	P162R	cCt	cGt	10	25	B.1	0.000092
N	162	P162R	cCT	cGC	9	25	B.1	0.000082
N	162	P162Q	cCT	cAG	7	25	B.1	0.000064
N	162	P162R	cCT	cGA	4	25	B.1	0.000037
N	162	P162R	CCT	AGA	2	25	B.1	0.000018
N	162	P162P	ccT	ccC	22	24	B.1.221	0.001563
N	162	P162P	ccT	ccA	2	24	B.1.221	0.000142
N	162	P162S	Cct	Tct	24	24	B.1.429	0.000565
N	162	P162S	Cct	Tct	23	23	AY.46.6	0.001661
N	162	P162L	cCt	cTt	11	23	B.1.160	0.000343
N	162	P162L	cCT	cTA	3	23	B.1.160	0.000094
N	162	P162L	CCT	TTA	3	23	B.1.160	0.000094
N	162	P162L	CCT	TTG	2	23	B.1.160	0.000062
N	162	P162L	cCT	cTG	2	23	B.1.160	0.000062
N	162	P162L	cCT	cTC	2	23	B.1.160	0.000062
N	162	P162I	CCt	ATt	9	23	B.1.177	0.000119
N	162	P162T	Cct	Act	9	23	B.1.177	0.000119
N	162	P162I	CCT	ATC	7	23	B.1.177	0.000092
N	162	P162I	CCT	ATA	7	23	B.1.177	0.000092
N	162	P162T	CcT	AcC	7	23	B.1.177	0.000092
N	162	P162T	CcT	AcA	7	23	B.1.177	0.000092
N	162	P162S	Cct	Tct	17	23	B.1.2	0.00015
N	162	P162S	CcT	TcA	4	23	B.1.2	0.000035
N	162	P162S	CcT	TcC	2	23	B.1.2	0.000018
N	162	P162P	ccT	ccC	17	22	AY.100	0.000782
N	162	P162P	ccT	ccA	5	22	AY.100	0.00023
N	162	P162P	ccT	ccC	12	21	B.1.160	0.000374
N	162	P162P	ccT	ccG	5	21	B.1.160	0.000156
N	162	P162P	ccT	ccA	4	21	B.1.160	0.000125
N	162	P162H	cCt	cAt	12	21	B.1.177	0.000158
N	162	P162H	cCT	cAC	9	21	B.1.177	0.000119
N	162	P162P	ccT	ccC	18	20	AY.43	0.00008
N	162	P162P	ccT	ccG	1	20	AY.43	0.000004
N	162	P162P	ccT	ccA	1	20	AY.43	0.000004
N	162	P162Y	CCt	TAt	11	20	B.1.177	0.000145
N	162	P162Y	CCT	TAC	9	20	B.1.177	0.000119
N	162	P162S	Cct	Tct	20	20	B.1.617.2	0.000075
N	162	P162L	cCt	cTt	20	20	B.6.6	0.017778
N	162	P162S	Cct	Tct	10	19	B.1.160	0.000312
N	162	P162S	CcT	TcA	4	19	B.1.160	0.000125
N	162	P162S	CcT	TcC	3	19	B.1.160	0.000094
N	162	P162S	CcT	TcG	2	19	B.1.160	0.000062
N	162	P162S	Cct	Tct	11	19	B.1.177.44	0.005708
N	162	P162S	CcT	TcC	6	19	B.1.177.44	0.003114
N	162	P162S	CcT	TcA	2	19	B.1.177.44	0.001038
N	162	P162L	cCt	cTt	19	19	B.1.637	0.001388
N	162	P162S	Cct	Tct	9	18	B.1.258	0.000599
N	162	P162S	CcT	TcC	5	18	B.1.258	0.000333
N	162	P162S	CcT	TcA	4	18	B.1.258	0.000266
N	162	P162V	CCt	GTt	6	17	All	0.000001
N	162	P162V	CCT	GTA	4	17	All	0.000001
N	162	P162V	CCT	GTC	4	17	All	0.000001
N	162	P162V	CCT	GTG	3	17	All	0.000001
N	162	P162C	CCt	TGt	9	17	B.1	0.000082
N	162	P162C	CCT	TGC	8	17	B.1	0.000073
N	162	P162A	Cct	Gct	8	17	B.1	0.000073
N	162	P162A	CcT	GcC	3	17	B.1	0.000027
N	162	P162A	CcT	GcA	3	17	B.1	0.000027
N	162	P162A	CcT	GcG	3	17	B.1	0.000027
N	162	P162S	Cct	Tct	10	17	B.1.1.39	0.005097
N	162	P162S	CcT	TcC	4	17	B.1.1.39	0.002039
N	162	P162S	CcT	TcA	2	17	B.1.1.39	0.001019
N	162	P162S	CcT	TcG	1	17	B.1.1.39	0.00051
N	162	P162L	cCt	cTt	17	17	Q.3	0.002466
N	162	P162L	cCt	cTt	11	16	B.1.221	0.000781
N	162	P162L	CCT	TTA	2	16	B.1.221	0.000142
N	162	P162L	cCT	cTA	2	16	B.1.221	0.000142
N	162	P162L	cCT	cTC	1	16	B.1.221	0.000071
N	162	P162P	ccT	ccC	16	16	B.1.620	0.015137
N	162	P162S	Cct	Tct	15	15	AY.103	0.000093
N	162	P162P	ccT	ccA	8	15	AY.25	0.000048
N	162	P162P	ccT	ccC	4	15	AY.25	0.000024
N	162	P162P	ccT	ccG	3	15	AY.25	0.000018
N	162	P162P	ccT	ccG	11	15	AY.3	0.000109
N	162	P162P	ccT	ccC	3	15	AY.3	0.00003
N	162	P162P	ccT	ccA	1	15	AY.3	0.00001
N	162	P162H	cCt	cAt	15	15	AY.4	0.000023
N	162	P162K	CCT	AAA	11	15	B.1	0.000101
N	162	P162K	CCT	AAG	4	15	B.1	0.000037
N	162	P162L	cCt	cTt	5	15	B.1.2	0.000044
N	162	P162L	CCT	TTA	4	15	B.1.2	0.000035
N	162	P162L	cCT	cTA	4	15	B.1.2	0.000035
N	162	P162L	cCT	cTC	2	15	B.1.2	0.000018
N	162	P162V	CCt	GTt	5	14	B.1	0.000046
N	162	P162V	CCT	GTA	3	14	B.1	0.000027
N	162	P162V	CCT	GTC	3	14	B.1	0.000027
N	162	P162V	CCT	GTG	3	14	B.1	0.000027
N	162	P162S	Cct	Tct	13	13	AY.39.1	0.000515
N	162	P162H	cCt	cAt	13	13	AY.44	0.000079
N	162	P162T	Cct	Act	10	13	B.1.1.7	0.000009
N	162	P162T	CcT	AcG	2	13	B.1.1.7	0.000002
N	162	P162T	CcT	AcA	1	13	B.1.1.7	0.000001
N	162	P162P	ccT	ccA	7	13	B.1.258	0.000466
N	162	P162P	ccT	ccC	6	13	B.1.258	0.000399
N	162	P162L	cCt	cTt	12	12	AY.103	0.000075
N	162	P162L	cCt	cTt	12	12	AY.26	0.00034
N	162	P162L	cCt	cTt	12	12	AY.44	0.000073
N	162	P162T	Cct	Act	5	12	B.1.1	0.000091
N	162	P162T	CcT	AcC	4	12	B.1.1	0.000073
N	162	P162T	CcT	AcA	2	12	B.1.1	0.000036
N	162	P162T	CcT	AcG	1	12	B.1.1	0.000018
N	162	P162L	cCt	cTt	11	11	AY.118	0.000689
N	162	P162S	Cct	Tct	11	11	AY.14	0.000968
N	162	P162H	cCt	cAt	8	11	B.1.1	0.000145
N	162	P162H	cCT	cAC	3	11	B.1.1	0.000054
N	162	P162L	cCt	cTt	6	11	B.1.1.39	0.003058
N	162	P162L	cCT	cTC	3	11	B.1.1.39	0.001529
N	162	P162L	cCT	cTA	1	11	B.1.1.39	0.00051
N	162	P162L	CCT	TTA	1	11	B.1.1.39	0.00051
N	162	P162P	ccT	ccG	11	11	B.1.160.12	0.070513
N	162	P162L	cCt	cTt	5	11	B.1.177.44	0.002595
N	162	P162L	cCT	cTC	4	11	B.1.177.44	0.002076
N	162	P162L	CCT	TTA	1	11	B.1.177.44	0.000519
N	162	P162L	cCT	cTA	1	11	B.1.177.44	0.000519
N	162	P162P	ccT	ccC	11	11	B.1.177.86	0.002018
N	162	P162F	CCt	TTt	6	11	B.1.258	0.000399
N	162	P162F	CCT	TTC	5	11	B.1.258	0.000333
N	162	P162P	ccT	ccC	11	11	B.1.351	0.000327
N	162	P162S	Cct	Tct	11	11	B.1.575	0.003337
N	162	P162S	Cct	Tct	10	10	AY.3	0.000099
N	162	P162L	cCt	cTt	4	10	B.1.1.385	0.017857
N	162	P162L	cCT	cTA	2	10	B.1.1.385	0.008929
N	162	P162L	CCT	TTA	2	10	B.1.1.385	0.008929
N	162	P162L	cCT	cTC	2	10	B.1.1.385	0.008929
N	162	P162L	cCt	cTt	10	10	B.1.1.519	0.000397
N	162	P162T	Cct	Act	4	10	B.1.2	0.000035
N	162	P162I	CCt	ATt	4	10	B.1.2	0.000035
N	162	P162T	CcT	AcA	4	10	B.1.2	0.000035
N	162	P162I	CCT	ATA	4	10	B.1.2	0.000035
N	162	P162I	CCT	ATC	2	10	B.1.2	0.000018
N	162	P162T	CcT	AcC	2	10	B.1.2	0.000018
N	162	P162S	Cct	Tct	7	10	B.1.221	0.000497
N	162	P162S	CcT	TcA	2	10	B.1.221	0.000142
N	162	P162S	CcT	TcC	1	10	B.1.221	0.000071
N	162	P162L	cCt	cTt	10	10	B.1.617.2	0.000038
N	162	P162S	Cct	Tct	9	9	AY.117	0.000761
N	162	P162H	cCt	cAt	9	9	AY.26	0.000255
N	162	P162A	Cct	Gct	9	9	AY.9.2	0.000331
N	162	P162I	CCt	ATt	4	9	B.1.1	0.000073
N	162	P162I	CCT	ATC	3	9	B.1.1	0.000054
N	162	P162I	CCT	ATA	2	9	B.1.1	0.000036
N	162	P162S	Cct	Tct	5	9	B.1.1.385	0.022321
N	162	P162S	CcT	TcA	2	9	B.1.1.385	0.008929
N	162	P162S	CcT	TcC	2	9	B.1.1.385	0.008929
N	162	P162F	CCt	TTt	6	9	B.1.1.39	0.003058
N	162	P162F	CCT	TTC	3	9	B.1.1.39	0.001529
N	162	P162F	CCt	TTt	7	9	B.1.160	0.000218
N	162	P162F	CCT	TTC	2	9	B.1.160	0.000062
N	162	P162X	CCT	TAA	8	9	B.1.177	0.000105
N	162	P162N	CCt	AAt	5	9	B.1.177	0.000066
N	162	P162N	CCT	AAC	4	9	B.1.177	0.000053
N	162	P162X	CCT	TGA	1	9	B.1.177	0.000013
N	162	P162P	ccT	ccC	7	9	B.1.177.44	0.003633
N	162	P162F	CCt	TTt	5	9	B.1.177.44	0.002595
N	162	P162F	CCT	TTC	4	9	B.1.177.44	0.002076
N	162	P162P	ccT	ccA	2	9	B.1.177.44	0.001038
N	162	P162I	CCt	ATt	3	9	B.1.258	0.0002
N	162	P162T	CcT	AcA	3	9	B.1.258	0.0002
N	162	P162I	CCT	ATC	3	9	B.1.258	0.0002
N	162	P162I	CCT	ATA	3	9	B.1.258	0.0002
N	162	P162T	CcT	AcC	3	9	B.1.258	0.0002
N	162	P162T	Cct	Act	3	9	B.1.258	0.0002
N	162	P162H	cCt	cAt	8	9	B.1.525	0.000905
N	162	P162H	cCT	cAC	1	9	B.1.525	0.000113
N	162	P162del1	ccT	cc-	5	8	All	0.000001
N	162	P162del1	Cct	-ct	2	8	All	0
N	162	P162del1	CCt	-Nt	1	8	All	0
N	162	P162L	cCt	cTt	8	8	AY.39	0.000198
N	162	P162S	Cct	Tct	8	8	AY.78	0.012327
N	162	P162Y	CCt	TAt	5	8	B.1.1	0.000091
N	162	P162Y	CCT	TAC	3	8	B.1.1	0.000054
N	162	P162del	CCT	---	8	8	B.1.1.7	0.000007
N	162	P162P	ccT	ccC	8	8	B.1.160.32	0.034335
N	162	P162Q	cCT	cAA	8	8	B.1.177	0.000105
N	162	P162L	cCt	cTt	4	8	B.1.258.11	0.001585
N	162	P162L	cCT	cTC	2	8	B.1.258.11	0.000793
N	162	P162L	CCT	TTA	1	8	B.1.258.11	0.000396
N	162	P162L	cCT	cTA	1	8	B.1.258.11	0.000396
N	162	P162S	Cct	Tct	8	8	P.1.2	0.009249
N	162	P162M	CCT	ATG	7	7	All	0.000001
N	162	P162P	ccT	ccC	7	7	AY.39	0.000173
N	162	P162L	cCt	cTt	7	7	AY.43	0.000031
N	162	P162N	CCt	AAt	4	7	B.1.1	0.000073
N	162	P162N	CCT	AAC	3	7	B.1.1	0.000054
N	162	P162L	cCT	cTA	2	7	B.1.1.170	0.002494
N	162	P162L	cCt	cTt	2	7	B.1.1.170	0.002494
N	162	P162L	CCT	TTA	2	7	B.1.1.170	0.002494
N	162	P162L	cCT	cTC	1	7	B.1.1.170	0.001247
N	162	P162L	cCt	cTt	2	7	B.1.1.372	0.001377
N	162	P162L	CCT	TTA	2	7	B.1.1.372	0.001377
N	162	P162L	cCT	cTA	2	7	B.1.1.372	0.001377
N	162	P162L	cCT	cTC	1	7	B.1.1.372	0.000689
N	162	P162P	ccT	ccC	4	7	B.1.1.39	0.002039
N	162	P162P	ccT	ccA	2	7	B.1.1.39	0.001019
N	162	P162P	ccT	ccG	1	7	B.1.1.39	0.00051
N	162	P162R	CCT	AGA	2	7	B.1.177	0.000026
N	162	P162R	cCt	cGt	2	7	B.1.177	0.000026
N	162	P162R	cCT	cGC	2	7	B.1.177	0.000026
N	162	P162R	cCT	cGA	1	7	B.1.177	0.000013
N	162	P162H	cCt	cAt	5	7	B.1.2	0.000044
N	162	P162H	cCT	cAC	2	7	B.1.2	0.000018
N	162	P162Y	CCt	TAt	4	7	B.1.258	0.000266
N	162	P162H	cCt	cAt	4	7	B.1.258	0.000266
N	162	P162H	cCT	cAC	3	7	B.1.258	0.0002
N	162	P162Y	CCT	TAC	3	7	B.1.258	0.0002
N	162	P162S	Cct	Tct	4	7	B.1.258.11	0.001585
N	162	P162S	CcT	TcC	2	7	B.1.258.11	0.000793
N	162	P162S	CcT	TcA	1	7	B.1.258.11	0.000396
N	162	P162P	ccT	ccC	7	7	P.1	0.00011
N	162	P162P	ccT	ccC	6	6	AY.113	0.000854
N	162	P162T	Cct	Act	6	6	AY.4	0.000009
N	162	P162S	Cct	Tct	6	6	AY.43	0.000027
N	162	P162L	cCt	cTt	6	6	AY.5	0.000124
N	162	P162T	Cct	Act	3	6	B.1.160	0.000094
N	162	P162T	CcT	AcA	2	6	B.1.160	0.000062
N	162	P162T	CcT	AcC	1	6	B.1.160	0.000031
N	162	P162F	CCt	TTt	4	6	B.1.2	0.000035
N	162	P162F	CCT	TTC	2	6	B.1.2	0.000018
N	162	P162F	CCt	TTt	5	6	B.1.221	0.000355
N	162	P162F	CCT	TTC	1	6	B.1.221	0.000071
N	162	P162N	CCt	AAt	3	6	B.1.258	0.0002
N	162	P162N	CCT	AAC	3	6	B.1.258	0.0002
N	162	P162F	CCt	TTt	4	6	B.1.258.11	0.001585
N	162	P162F	CCT	TTC	2	6	B.1.258.11	0.000793
N	162	P162P	ccT	ccA	3	6	B.1.596	0.000261
N	162	P162P	ccT	ccC	3	6	B.1.596	0.000261
N	162	P162L	cCt	cTt	2	6	B.1.609	0.000959
N	162	P162L	cCT	cTA	1	6	B.1.609	0.000479
N	162	P162L	CCT	TTG	1	6	B.1.609	0.000479
N	162	P162L	cCT	cTG	1	6	B.1.609	0.000479
N	162	P162L	CCT	TTA	1	6	B.1.609	0.000479
N	162	P162P	ccT	ccC	3	5	AY.102	0.00008
N	162	P162P	ccT	ccG	1	5	AY.102	0.000027
N	162	P162P	ccT	ccA	1	5	AY.102	0.000027
N	162	P162L	cCt	cTt	5	5	AY.119	0.000177
N	162	P162L	cCt	cTt	5	5	AY.39.1	0.000198
N	162	P162L	cCt	cTt	5	5	AY.6	0.000206
N	162	P162P	ccT	ccC	5	5	B	0.000639
N	162	P162M	CCT	ATG	5	5	B.1	0.000046
N	162	P162Q	cCT	cAA	4	5	B.1.1	0.000073
N	162	P162Q	cCT	cAG	1	5	B.1.1	0.000018
N	162	P162S	Cct	Tct	2	5	B.1.1.170	0.002494
N	162	P162S	CcT	TcA	2	5	B.1.1.170	0.002494
N	162	P162S	CcT	TcC	1	5	B.1.1.170	0.001247
N	162	P162S	Cct	Tct	2	5	B.1.1.372	0.001377
N	162	P162S	CcT	TcA	2	5	B.1.1.372	0.001377
N	162	P162S	CcT	TcC	1	5	B.1.1.372	0.000689
N	162	P162P	ccT	ccC	3	5	B.1.1.385	0.013393
N	162	P162P	ccT	ccA	2	5	B.1.1.385	0.008929
N	162	P162I	CCT	ATA	2	5	B.1.160	0.000062
N	162	P162I	CCt	ATt	2	5	B.1.160	0.000062
N	162	P162I	CCT	ATC	1	5	B.1.160	0.000031
N	162	P162H	cCt	cAt	3	5	B.1.177.44	0.001557
N	162	P162H	cCT	cAC	2	5	B.1.177.44	0.001038
N	162	P162S	Cct	Tct	3	5	B.1.177.77	0.002179
N	162	P162S	CcT	TcC	2	5	B.1.177.77	0.001452
N	162	P162P	ccT	ccC	5	5	B.1.221.2	0.02008
N	162	P162S	Cct	Tct	2	5	B.1.609	0.000959
N	162	P162S	CcT	TcA	1	5	B.1.609	0.000479
N	162	P162R	cCt	cGt	1	5	B.1.609	0.000479
N	162	P162S	CcT	TcG	1	5	B.1.609	0.000479
N	162	P162R	cCT	cGG	1	5	B.1.609	0.000479
N	162	P162S	CCt	AGt	1	5	B.1.609	0.000479
N	162	P162R	CCT	AGG	1	5	B.1.609	0.000479
N	162	P162R	cCT	cGA	1	5	B.1.609	0.000479
N	162	P162R	CCT	AGA	1	5	B.1.609	0.000479
N	162	P162L	cCt	cTt	5	5	B.1.617.1	0.000645
N	162	P162H	cCt	cAt	5	5	B.1.617.2	0.000019
N	162	P162P	ccT	ccC	4	4	AD.2	0.000876
N	162	P162T	Cct	Act	4	4	AY.102	0.000106
N	162	P162H	cCt	cAt	4	4	AY.103	0.000025
N	162	P162del	CCT	---	4	4	AY.25	0.000024
N	162	P162S	Cct	Tct	4	4	AY.26	0.000113
N	162	P162L	cCt	cTt	4	4	AY.3	0.00004
N	162	P162P	ccT	ccG	4	4	AY.30	0.001583
N	162	P162L	cCt	cTt	4	4	AY.50	0.003197
N	162	P162X	CCT	TAA	4	4	B.1.1	0.000073
N	162	P162P	ccT	ccC	3	4	B.1.1.189	0.004539
N	162	P162P	ccT	ccA	1	4	B.1.1.189	0.001513
N	162	P162S	Cct	Tct	3	4	B.1.1.277	0.002276
N	162	P162L	cCt	cTt	2	4	B.1.1.277	0.001517
N	162	P162L	CCT	TTA	1	4	B.1.1.277	0.000759
N	162	P162S	CcT	TcA	1	4	B.1.1.277	0.000759
N	162	P162L	cCT	cTA	1	4	B.1.1.277	0.000759
N	162	P162L	cCT	cTC	1	4	B.1.1.301	0.001179
N	162	P162L	cCT	cTA	1	4	B.1.1.301	0.001179
N	162	P162L	cCt	cTt	1	4	B.1.1.301	0.001179
N	162	P162L	CCT	TTA	1	4	B.1.1.301	0.001179
N	162	P162P	ccT	ccC	2	4	B.1.1.372	0.001377
N	162	P162P	ccT	ccA	2	4	B.1.1.372	0.001377
N	162	P162F	CCt	TTt	3	4	B.1.1.385	0.013393
N	162	P162F	CCT	TTC	1	4	B.1.1.385	0.004464
N	162	P162Y	CCT	TAC	2	4	B.1.1.39	0.001019
N	162	P162H	cCT	cAC	2	4	B.1.1.39	0.001019
N	162	P162T	Cct	Act	2	4	B.1.1.39	0.001019
N	162	P162Y	CCt	TAt	2	4	B.1.1.39	0.001019
N	162	P162I	CCt	ATt	2	4	B.1.1.39	0.001019
N	162	P162H	cCt	cAt	2	4	B.1.1.39	0.001019
N	162	P162T	CcT	AcC	1	4	B.1.1.39	0.00051
N	162	P162I	CCT	ATC	1	4	B.1.1.39	0.00051
N	162	P162T	CcT	AcA	1	4	B.1.1.39	0.00051
N	162	P162I	CCT	ATA	1	4	B.1.1.39	0.00051
N	162	P162L	cCT	cTA	1	4	B.1.1.515	0.02
N	162	P162L	CCT	TTA	1	4	B.1.1.515	0.02
N	162	P162L	cCt	cTt	1	4	B.1.1.515	0.02
N	162	P162L	cCT	cTC	1	4	B.1.1.515	0.02
N	162	P162P	ccT	ccC	4	4	B.1.1.519	0.000159
N	162	P162K	CCT	AAA	4	4	B.1.177	0.000053
N	162	P162C	CCT	TGC	2	4	B.1.177	0.000026
N	162	P162C	CCt	TGt	2	4	B.1.177	0.000026
N	162	P162Y	CCt	TAt	2	4	B.1.177.44	0.001038
N	162	P162Y	CCT	TAC	2	4	B.1.177.44	0.001038
N	162	P162Y	CCT	TAC	2	4	B.1.2	0.000018
N	162	P162N	CCT	AAC	2	4	B.1.2	0.000018
N	162	P162N	CCt	AAt	2	4	B.1.2	0.000018
N	162	P162Y	CCt	TAt	2	4	B.1.2	0.000018
N	162	P162H	cCt	cAt	2	4	B.1.221	0.000142
N	162	P162H	cCT	cAC	2	4	B.1.221	0.000142
N	162	P162P	ccT	ccC	4	4	B.1.236	0.008214
N	162	P162L	cCt	cTt	1	4	B.1.293	0.0125
N	162	P162L	cCT	cTC	1	4	B.1.293	0.0125
N	162	P162L	cCT	cTA	1	4	B.1.293	0.0125
N	162	P162L	CCT	TTA	1	4	B.1.293	0.0125
N	162	P162P	ccT	ccC	4	4	B.1.36	0.000584
N	162	P162L	cCt	cTt	4	4	B.1.404	0.005208
N	162	P162P	ccT	ccC	3	4	B.1.427	0.000151
N	162	P162P	ccT	ccG	1	4	B.1.427	0.00005
N	162	P162T	Cct	Act	4	4	B.1.617.2	0.000015
N	162	P162L	cCT	cTA	1	4	B.1.78	0.008547
N	162	P162L	CCT	TTA	1	4	B.1.78	0.008547
N	162	P162L	cCt	cTt	1	4	B.1.78	0.008547
N	162	P162L	cCT	cTC	1	4	B.1.78	0.008547
N	162	P162S	Cct	Tct	3	4	C.35	0.002322
N	162	P162S	CcT	TcC	1	4	C.35	0.000774
N	162	P162S	Cct	Tct	3	4	K.1	0.071429
N	162	P162S	CcT	TcC	1	4	K.1	0.02381
N	162	P162H	cCt	cAt	4	4	Q.8	0.00066
N	162	P162P	ccT	ccC	2	3		0.111111
N	162	P162P	ccT	ccA	1	3		0.055556
N	162	P162D	CCt	GAt	2	3	All	0
N	162	P162del2	CCT	--G	2	3	All	0
N	162	P162del2	CCt	--t	1	3	All	0
N	162	P162G	CCt	GGt	1	3	All	0
N	162	P162G	CCT	GGA	1	3	All	0
N	162	P162D	CCT	GAC	1	3	All	0
N	162	P162G	CCT	GGC	1	3	All	0
N	162	P162S	Cct	Tct	3	3	AY.25	0.000018
N	162	P162S	Cct	Tct	3	3	AY.35	0.000699
N	162	P162P	ccT	ccC	3	3	AY.38	0.001498
N	162	P162H	cCt	cAt	3	3	AY.39	0.000074
N	162	P162L	cCt	cTt	3	3	AY.4.2	0.000065
N	162	P162H	cCt	cAt	3	3	AY.43	0.000013
N	162	P162del	CCT	---	3	3	AY.43	0.000013
N	162	P162S	Cct	Tct	3	3	AY.46.4	0.000494
N	162	P162P	ccT	ccA	3	3	AY.47	0.000093
N	162	P162P	ccT	ccC	3	3	AY.6	0.000123
N	162	P162del	CCT	---	3	3	B.1	0.000027
N	162	P162G	CCt	GGt	1	3	B.1	0.000009
N	162	P162G	CCT	GGA	1	3	B.1	0.000009
N	162	P162G	CCT	GGC	1	3	B.1	0.000009
N	162	P162K	CCT	AAA	2	3	B.1.1	0.000036
N	162	P162K	CCT	AAG	1	3	B.1.1	0.000018
N	162	P162F	CCt	TTt	2	3	B.1.1.170	0.002494
N	162	P162P	ccT	ccA	2	3	B.1.1.170	0.002494
N	162	P162T	Cct	Act	1	3	B.1.1.170	0.001247
N	162	P162I	CCT	ATC	1	3	B.1.1.170	0.001247
N	162	P162I	CCt	ATt	1	3	B.1.1.170	0.001247
N	162	P162F	CCT	TTC	1	3	B.1.1.170	0.001247
N	162	P162T	CcT	AcA	1	3	B.1.1.170	0.001247
N	162	P162I	CCT	ATA	1	3	B.1.1.170	0.001247
N	162	P162P	ccT	ccC	1	3	B.1.1.170	0.001247
N	162	P162T	CcT	AcC	1	3	B.1.1.170	0.001247
N	162	P162S	Cct	Tct	2	3	B.1.1.189	0.003026
N	162	P162S	CcT	TcA	1	3	B.1.1.189	0.001513
N	162	P162L	cCt	cTt	1	3	B.1.1.193	0.111111
N	162	P162L	cCT	cTA	1	3	B.1.1.193	0.111111
N	162	P162L	CCT	TTA	1	3	B.1.1.193	0.111111
N	162	P162S	CcT	TcC	1	3	B.1.1.301	0.001179
N	162	P162S	Cct	Tct	1	3	B.1.1.301	0.001179
N	162	P162S	CcT	TcA	1	3	B.1.1.301	0.001179
N	162	P162F	CCt	TTt	2	3	B.1.1.372	0.001377
N	162	P162F	CCT	TTC	1	3	B.1.1.372	0.000689
N	162	P162del	CCT	---	3	3	B.1.1.420	0.003018
N	162	P162S	CcT	TcC	1	3	B.1.1.515	0.02
N	162	P162I	CCT	ATC	1	3	B.1.1.515	0.02
N	162	P162T	CcT	AcC	1	3	B.1.1.515	0.02
N	162	P162T	CcT	AcA	1	3	B.1.1.515	0.02
N	162	P162T	Cct	Act	1	3	B.1.1.515	0.02
N	162	P162S	CcT	TcA	1	3	B.1.1.515	0.02
N	162	P162S	Cct	Tct	1	3	B.1.1.515	0.02
N	162	P162I	CCT	ATA	1	3	B.1.1.515	0.02
N	162	P162I	CCt	ATt	1	3	B.1.1.515	0.02
N	162	P162del2	CCT	--G	2	3	B.1.1.7	0.000002
N	162	P162del2	CCt	--t	1	3	B.1.1.7	0.000001
N	162	P162R	CCT	AGA	1	3	B.1.1.7	0.000001
N	162	P162R	cCT	cGA	1	3	B.1.1.7	0.000001
N	162	P162R	cCt	cGt	1	3	B.1.1.7	0.000001
N	162	P162P	ccT	ccC	3	3	B.1.139	0.002199
N	162	P162Y	CCt	TAt	2	3	B.1.160	0.000062
N	162	P162H	cCt	cAt	2	3	B.1.160	0.000062
N	162	P162N	CCt	AAt	2	3	B.1.160	0.000062
N	162	P162H	cCT	cAC	1	3	B.1.160	0.000031
N	162	P162Y	CCT	TAC	1	3	B.1.160	0.000031
N	162	P162N	CCT	AAC	1	3	B.1.160	0.000031
N	162	P162del	CCT	---	3	3	B.1.177	0.00004
N	162	P162L	CCT	TTA	1	3	B.1.177.33	0.001645
N	162	P162L	cCt	cTt	1	3	B.1.177.33	0.001645
N	162	P162L	cCT	cTA	1	3	B.1.177.33	0.001645
N	162	P162P	ccT	ccC	3	3	B.1.177.73	0.001699
N	162	P162P	ccT	ccC	2	3	B.1.177.75	0.002081
N	162	P162P	ccT	ccG	1	3	B.1.177.75	0.001041
N	162	P162F	CCt	TTt	2	3	B.1.177.77	0.001452
N	162	P162L	cCt	cTt	2	3	B.1.177.77	0.001452
N	162	P162F	CCT	TTC	1	3	B.1.177.77	0.000726
N	162	P162L	cCT	cTC	1	3	B.1.177.77	0.000726
N	162	P162S	Cct	Tct	2	3	B.1.177.86	0.000367
N	162	P162S	CcT	TcC	1	3	B.1.177.86	0.000183
N	162	P162I	CCT	ATC	1	3	B.1.221	0.000071
N	162	P162T	CcT	AcA	1	3	B.1.221	0.000071
N	162	P162T	Cct	Act	1	3	B.1.221	0.000071
N	162	P162T	CcT	AcC	1	3	B.1.221	0.000071
N	162	P162I	CCt	ATt	1	3	B.1.221	0.000071
N	162	P162I	CCT	ATA	1	3	B.1.221	0.000071
N	162	P162K	CCT	AAA	3	3	B.1.258	0.0002
N	162	P162Q	cCT	cAA	3	3	B.1.258	0.0002
N	162	P162X	CCT	TAA	3	3	B.1.258	0.0002
N	162	P162P	ccT	ccC	2	3	B.1.258.11	0.000793
N	162	P162P	ccT	ccA	1	3	B.1.258.11	0.000396
N	162	P162L	CCT	TTA	1	3	B.1.284	0.013158
N	162	P162L	cCT	cTA	1	3	B.1.284	0.013158
N	162	P162L	cCt	cTt	1	3	B.1.284	0.013158
N	162	P162S	Cct	Tct	1	3	B.1.293	0.0125
N	162	P162S	CcT	TcA	1	3	B.1.293	0.0125
N	162	P162V	CCt	GTt	1	3	B.1.293	0.0125
N	162	P162V	CCT	GTC	1	3	B.1.293	0.0125
N	162	P162A	CcT	GcC	1	3	B.1.293	0.0125
N	162	P162A	Cct	Gct	1	3	B.1.293	0.0125
N	162	P162S	CcT	TcC	1	3	B.1.293	0.0125
N	162	P162A	CcT	GcA	1	3	B.1.293	0.0125
N	162	P162V	CCT	GTA	1	3	B.1.293	0.0125
N	162	P162S	Cct	Tct	2	3	B.1.351	0.000059
N	162	P162S	CcT	TcC	1	3	B.1.351	0.00003
N	162	P162P	ccT	ccC	3	3	B.1.354	0.130435
N	162	P162T	CcT	AcG	1	3	B.1.609	0.000479
N	162	P162T	CcT	AcA	1	3	B.1.609	0.000479
N	162	P162T	Cct	Act	1	3	B.1.609	0.000479
N	162	P162I	CCT	ATA	1	3	B.1.78	0.008547
N	162	P162T	CcT	AcC	1	3	B.1.78	0.008547
N	162	P162I	CCT	ATC	1	3	B.1.78	0.008547
N	162	P162I	CCt	ATt	1	3	B.1.78	0.008547
N	162	P162S	Cct	Tct	1	3	B.1.78	0.008547
N	162	P162T	Cct	Act	1	3	B.1.78	0.008547
N	162	P162S	CcT	TcA	1	3	B.1.78	0.008547
N	162	P162T	CcT	AcA	1	3	B.1.78	0.008547
N	162	P162S	CcT	TcC	1	3	B.1.78	0.008547
N	162	P162S	Cct	Tct	3	3	B.1.9.4	0.018405
N	162	P162P	ccT	ccC	3	3	C.14	0.012987
N	162	P162L	cCt	cTt	2	3	C.35	0.001548
N	162	P162F	CCt	TTt	2	3	C.35	0.001548
N	162	P162F	CCT	TTC	1	3	C.35	0.000774
N	162	P162L	cCT	cTC	1	3	C.35	0.000774
N	162	P162S	Cct	Tct	3	3	D.2	0.000225
N	162	P162C	CCt	TGt	2	3	K.1	0.047619
N	162	P162R	cCt	cGt	2	3	K.1	0.047619
N	162	P162C	CCT	TGC	1	3	K.1	0.02381
N	162	P162R	cCT	cGC	1	3	K.1	0.02381
N	162	P162P	ccT	ccC	3	3	P.1.14	0.000143
N	162	P162H	cCt	cAt	1	2		0.055556
N	162	P162H	cCT	cAC	1	2		0.055556
N	162	P162L	cCt	cTt	2	2	A	0.000774
N	162	P162E	CCT	GAG	1	2	All	0
N	162	P162E	CCT	GAA	1	2	All	0
N	162	P162L	cCt	cTt	2	2	AY.102	0.000053
N	162	P162S	Cct	Tct	2	2	AY.114	0.000462
N	162	P162P	ccT	ccC	2	2	AY.117	0.000169
N	162	P162P	ccT	ccA	1	2	AY.119	0.000035
N	162	P162P	ccT	ccC	1	2	AY.119	0.000035
N	162	P162L	cCt	cTt	2	2	AY.120	0.000074
N	162	P162P	ccT	ccA	1	2	AY.120	0.000037
N	162	P162P	ccT	ccG	1	2	AY.120	0.000037
N	162	P162P	ccT	ccC	2	2	AY.16	0.000759
N	162	P162S	Cct	Tct	2	2	AY.20	0.000078
N	162	P162L	cCt	cTt	2	2	AY.20	0.000078
N	162	P162P	ccT	ccC	2	2	AY.26	0.000057
N	162	P162L	cCt	cTt	2	2	AY.27	0.000129
N	162	P162P	ccT	ccC	2	2	AY.29	0.000032
N	162	P162S	Cct	Tct	2	2	AY.29	0.000032
N	162	P162H	cCt	cAt	2	2	AY.3	0.00002
N	162	P162P	ccT	ccA	1	2	AY.3.1	0.000085
N	162	P162P	ccT	ccC	1	2	AY.3.1	0.000085
N	162	P162L	cCt	cTt	2	2	AY.4.4	0.000818
N	162	P162P	ccT	ccC	2	2	AY.46.6	0.000144
N	162	P162H	cCt	cAt	2	2	AY.5	0.000041
N	162	P162S	Cct	Tct	2	2	AY.56	0.00321
N	162	P162P	ccT	ccC	2	2	AY.59	0.001059
N	162	P162S	Cct	Tct	2	2	AY.6	0.000082
N	162	P162L	cCt	cTt	2	2	AY.63	0.000774
N	162	P162S	Cct	Tct	2	2	AY.8	0.001212
N	162	P162del	CCT	---	2	2	B.1.1	0.000036
N	162	P162N	CCt	AAt	1	2	B.1.1.170	0.001247
N	162	P162Y	CCT	TAC	1	2	B.1.1.170	0.001247
N	162	P162H	cCT	cAC	1	2	B.1.1.170	0.001247
N	162	P162N	CCT	AAC	1	2	B.1.1.170	0.001247
N	162	P162H	cCt	cAt	1	2	B.1.1.170	0.001247
N	162	P162Y	CCt	TAt	1	2	B.1.1.170	0.001247
N	162	P162S	CcT	TcA	1	2	B.1.1.193	0.111111
N	162	P162S	Cct	Tct	1	2	B.1.1.193	0.111111
N	162	P162S	Cct	Tct	2	2	B.1.1.222	0.000408
N	162	P162F	CCt	TTt	2	2	B.1.1.277	0.001517
N	162	P162del	CCT	---	2	2	B.1.1.28	0.000622
N	162	P162H	cCt	cAt	1	2	B.1.1.301	0.001179
N	162	P162P	ccT	ccA	1	2	B.1.1.301	0.001179
N	162	P162Y	CCT	TAC	1	2	B.1.1.301	0.001179
N	162	P162P	ccT	ccC	1	2	B.1.1.301	0.001179
N	162	P162H	cCT	cAC	1	2	B.1.1.301	0.001179
N	162	P162Y	CCt	TAt	1	2	B.1.1.301	0.001179
N	162	P162F	CCt	TTt	1	2	B.1.1.301	0.001179
N	162	P162F	CCT	TTC	1	2	B.1.1.301	0.001179
N	162	P162S	Cct	Tct	2	2	B.1.1.317	0.000823
N	162	P162R	cCT	cGC	1	2	B.1.1.385	0.004464
N	162	P162C	CCT	TGC	1	2	B.1.1.385	0.004464
N	162	P162R	cCt	cGt	1	2	B.1.1.385	0.004464
N	162	P162C	CCt	TGt	1	2	B.1.1.385	0.004464
N	162	P162N	CCT	AAC	1	2	B.1.1.39	0.00051
N	162	P162N	CCt	AAt	1	2	B.1.1.39	0.00051
N	162	P162P	ccT	ccC	2	2	B.1.1.409	0.005666
N	162	P162N	CCT	AAC	1	2	B.1.1.515	0.02
N	162	P162P	ccT	ccC	1	2	B.1.1.515	0.02
N	162	P162P	ccT	ccA	1	2	B.1.1.515	0.02
N	162	P162F	CCt	TTt	1	2	B.1.1.515	0.02
N	162	P162H	cCt	cAt	1	2	B.1.1.515	0.02
N	162	P162F	CCT	TTC	1	2	B.1.1.515	0.02
N	162	P162Y	CCt	TAt	1	2	B.1.1.515	0.02
N	162	P162N	CCt	AAt	1	2	B.1.1.515	0.02
N	162	P162H	cCT	cAC	1	2	B.1.1.515	0.02
N	162	P162Y	CCT	TAC	1	2	B.1.1.515	0.02
N	162	P162R	cCt	cGt	2	2	B.1.1.519	0.000079
N	162	P162S	Cct	Tct	2	2	B.1.1.519	0.000079
N	162	P162Q	cCT	cAG	1	2	B.1.1.7	0.000001
N	162	P162Q	cCT	cAA	1	2	B.1.1.7	0.000001
N	162	P162F	CCT	TTC	1	2	B.1.1.70	0.000341
N	162	P162S	CcT	TcC	1	2	B.1.1.70	0.000341
N	162	P162F	CCt	TTt	1	2	B.1.1.70	0.000341
N	162	P162L	cCT	cTC	1	2	B.1.1.70	0.000341
N	162	P162L	cCt	cTt	1	2	B.1.1.70	0.000341
N	162	P162S	Cct	Tct	1	2	B.1.1.70	0.000341
N	162	P162S	Cct	Tct	2	2	B.1.146	0.008475
N	162	P162X	CCT	TAA	2	2	B.1.160	0.000062
N	162	P162Q	cCT	cAA	2	2	B.1.160	0.000062
N	162	P162K	CCT	AAA	2	2	B.1.160	0.000062
N	162	P162P	ccT	ccC	2	2	B.1.160.17	0.003401
N	162	P162P	ccT	ccC	2	2	B.1.177.16	0.001329
N	162	P162S	Cct	Tct	1	2	B.1.177.33	0.001645
N	162	P162S	CcT	TcA	1	2	B.1.177.33	0.001645
N	162	P162I	CCT	ATC	1	2	B.1.177.44	0.000519
N	162	P162T	Cct	Act	1	2	B.1.177.44	0.000519
N	162	P162I	CCt	ATt	1	2	B.1.177.44	0.000519
N	162	P162T	CcT	AcC	1	2	B.1.177.44	0.000519
N	162	P162H	cCt	cAt	1	2	B.1.177.50	0.004695
N	162	P162S	Cct	Tct	1	2	B.1.177.50	0.004695
N	162	P162S	CcT	TcC	1	2	B.1.177.50	0.004695
N	162	P162Y	CCt	TAt	1	2	B.1.177.50	0.004695
N	162	P162H	cCT	cAC	1	2	B.1.177.50	0.004695
N	162	P162Y	CCT	TAC	1	2	B.1.177.50	0.004695
N	162	P162del	CCT	---	2	2	B.1.177.75	0.002081
N	162	P162F	CCT	TTC	1	2	B.1.177.75	0.001041
N	162	P162S	CcT	TcC	1	2	B.1.177.75	0.001041
N	162	P162L	cCt	cTt	1	2	B.1.177.75	0.001041
N	162	P162F	CCt	TTt	1	2	B.1.177.75	0.001041
N	162	P162L	cCT	cTC	1	2	B.1.177.75	0.001041
N	162	P162S	Cct	Tct	1	2	B.1.177.75	0.001041
N	162	P162P	ccT	ccC	2	2	B.1.177.77	0.001452
N	162	P162Y	CCt	TAt	1	2	B.1.177.77	0.000726
N	162	P162H	cCT	cAC	1	2	B.1.177.77	0.000726
N	162	P162Y	CCT	TAC	1	2	B.1.177.77	0.000726
N	162	P162H	cCt	cAt	1	2	B.1.177.77	0.000726
N	162	P162S	Cct	Tct	2	2	B.1.177.81	0.000379
N	162	P162H	cCt	cAt	1	2	B.1.177.86	0.000183
N	162	P162H	cCT	cAC	1	2	B.1.177.86	0.000183
N	162	P162L	cCt	cTt	1	2	B.1.177.86	0.000183
N	162	P162T	Cct	Act	1	2	B.1.177.86	0.000183
N	162	P162L	cCT	cTC	1	2	B.1.177.86	0.000183
N	162	P162F	CCt	TTt	1	2	B.1.177.86	0.000183
N	162	P162T	CcT	AcC	1	2	B.1.177.86	0.000183
N	162	P162I	CCT	ATC	1	2	B.1.177.86	0.000183
N	162	P162I	CCt	ATt	1	2	B.1.177.86	0.000183
N	162	P162F	CCT	TTC	1	2	B.1.177.86	0.000183
N	162	P162Y	CCt	TAt	1	2	B.1.177.86	0.000183
N	162	P162Y	CCT	TAC	1	2	B.1.177.86	0.000183
N	162	P162N	CCt	AAt	1	2	B.1.177.86	0.000183
N	162	P162N	CCT	AAC	1	2	B.1.177.86	0.000183
N	162	P162K	CCT	AAA	2	2	B.1.2	0.000018
N	162	P162Q	cCT	cAA	2	2	B.1.2	0.000018
N	162	P162X	CCT	TAA	2	2	B.1.2	0.000018
N	162	P162N	CCt	AAt	1	2	B.1.221	0.000071
N	162	P162Y	CCT	TAC	1	2	B.1.221	0.000071
N	162	P162N	CCT	AAC	1	2	B.1.221	0.000071
N	162	P162Y	CCt	TAt	1	2	B.1.221	0.000071
N	162	P162C	CCT	TGC	1	2	B.1.258	0.000067
N	162	P162R	cCT	cGC	1	2	B.1.258	0.000067
N	162	P162R	cCt	cGt	1	2	B.1.258	0.000067
N	162	P162C	CCt	TGt	1	2	B.1.258	0.000067
N	162	P162H	cCt	cAt	2	2	B.1.258.11	0.000793
N	162	P162T	CcT	AcA	1	2	B.1.258.11	0.000396
N	162	P162I	CCt	ATt	1	2	B.1.258.11	0.000396
N	162	P162I	CCT	ATA	1	2	B.1.258.11	0.000396
N	162	P162T	Cct	Act	1	2	B.1.258.11	0.000396
N	162	P162S	CcT	TcA	1	2	B.1.284	0.013158
N	162	P162S	Cct	Tct	1	2	B.1.284	0.013158
N	162	P162H	cCt	cAt	1	2	B.1.293	0.0125
N	162	P162P	ccT	ccA	1	2	B.1.293	0.0125
N	162	P162F	CCt	TTt	1	2	B.1.293	0.0125
N	162	P162P	ccT	ccC	1	2	B.1.293	0.0125
N	162	P162D	CCT	GAC	1	2	B.1.293	0.0125
N	162	P162Y	CCt	TAt	1	2	B.1.293	0.0125
N	162	P162D	CCt	GAt	1	2	B.1.293	0.0125
N	162	P162Y	CCT	TAC	1	2	B.1.293	0.0125
N	162	P162H	cCT	cAC	1	2	B.1.293	0.0125
N	162	P162F	CCT	TTC	1	2	B.1.293	0.0125
N	162	P162P	ccT	ccC	2	2	B.1.375	0.001639
N	162	P162T	Cct	Act	1	2	B.1.389	0.001002
N	162	P162T	CcT	AcA	1	2	B.1.389	0.001002
N	162	P162P	ccT	ccA	1	2	B.1.389	0.001002
N	162	P162P	ccT	ccC	1	2	B.1.389	0.001002
N	162	P162S	Cct	Tct	2	2	B.1.427	0.000101
N	162	P162P	ccT	ccG	1	2	B.1.429	0.000024
N	162	P162P	ccT	ccC	1	2	B.1.429	0.000024
N	162	P162T	Cct	Act	1	2	B.1.525	0.000113
N	162	P162N	CCT	AAC	1	2	B.1.525	0.000113
N	162	P162N	CCt	AAt	1	2	B.1.525	0.000113
N	162	P162T	CcT	AcC	1	2	B.1.525	0.000113
N	162	P162L	cCt	cTt	2	2	B.1.526	0.000047
N	162	P162P	ccT	ccC	1	2	B.1.575	0.000303
N	162	P162P	ccT	ccG	1	2	B.1.575	0.000303
N	162	P162X	CCT	TAA	1	2	B.1.576	0.000907
N	162	P162S	Cct	Tct	1	2	B.1.576	0.000907
N	162	P162R	cCT	cGA	1	2	B.1.576	0.000907
N	162	P162R	cCt	cGt	1	2	B.1.576	0.000907
N	162	P162X	CCT	TGA	1	2	B.1.576	0.000907
N	162	P162S	CcT	TcA	1	2	B.1.576	0.000907
N	162	P162S	Cct	Tct	2	2	B.1.582	0.000981
N	162	P162F	CCt	TTt	2	2	B.1.609	0.000959
N	162	P162I	CCT	ATA	1	2	B.1.609	0.000479
N	162	P162I	CCt	ATt	1	2	B.1.609	0.000479
N	162	P162P	ccT	ccA	1	2	B.1.609	0.000479
N	162	P162P	ccT	ccG	1	2	B.1.609	0.000479
N	162	P162L	cCt	cTt	2	2	B.1.621	0.000177
N	162	P162H	cCt	cAt	2	2	B.1.621	0.000177
N	162	P162H	cCt	cAt	1	2	B.1.78	0.008547
N	162	P162P	ccT	ccC	1	2	B.1.78	0.008547
N	162	P162P	ccT	ccA	1	2	B.1.78	0.008547
N	162	P162F	CCt	TTt	1	2	B.1.78	0.008547
N	162	P162F	CCT	TTC	1	2	B.1.78	0.008547
N	162	P162Y	CCt	TAt	1	2	B.1.78	0.008547
N	162	P162Y	CCT	TAC	1	2	B.1.78	0.008547
N	162	P162N	CCT	AAC	1	2	B.1.78	0.008547
N	162	P162H	cCT	cAC	1	2	B.1.78	0.008547
N	162	P162N	CCt	AAt	1	2	B.1.78	0.008547
N	162	P162Y	CCt	TAt	1	2	C.30	0.001727
N	162	P162S	CcT	TcC	1	2	C.30	0.001727
N	162	P162Y	CCT	TAC	1	2	C.30	0.001727
N	162	P162H	cCT	cAC	1	2	C.30	0.001727
N	162	P162S	Cct	Tct	1	2	C.30	0.001727
N	162	P162H	cCt	cAt	1	2	C.30	0.001727
N	162	P162P	ccT	ccC	2	2	C.35	0.001548
N	162	P162S	Cct	Tct	2	2	C.37	0.000232
N	162	P162del	CCT	---	2	2	P.1	0.000032
N	162	P162P	ccT	ccA	1	2	P.2	0.000187
N	162	P162P	ccT	ccC	1	2	P.2	0.000187
N	162	P162S	Cct	Tct	2	2	Q.1	0.000253
N	162	P162L	cCt	cTt	2	2	Q.8	0.00033
N	162	P162T	Cct	Act	1	1		0.055556
N	162	P162S	Cct	Tct	1	1		0.055556
N	162	P162Q	cCT	cAA	1	1		0.055556
N	162	P162P	ccT	ccC	1	1	A	0.000387
N	162	P162P	ccT	ccC	1	1	A.2	0.000662
N	162	P162S	Cct	Tct	1	1	A.21	0.00277
N	162	P162del1	Cct	-ct	1	1	AD.2	0.000219
N	162	P162H	cCt	cAt	1	1	AE.8	0.000489
N	162	P162W	CCT	TGG	1	1	All	0
N	162	P162P	ccT	ccC	1	1	AY.1	0.000396
N	162	P162S	Cct	Tct	1	1	AY.100	0.000046
N	162	P162S	Cct	Tct	1	1	AY.102	0.000027
N	162	P162H	cCt	cAt	1	1	AY.102	0.000027
N	162	P162P	ccT	ccC	1	1	AY.110	0.000113
N	162	P162P	ccT	ccC	1	1	AY.111	0.000183
N	162	P162H	cCt	cAt	1	1	AY.113	0.000142
N	162	P162S	Cct	Tct	1	1	AY.116	0.000287
N	162	P162H	cCt	cAt	1	1	AY.118	0.000063
N	162	P162del	CCT	---	1	1	AY.12	0.000316
N	162	P162P	ccT	ccC	1	1	AY.120.1	0.000321
N	162	P162P	ccT	ccC	1	1	AY.14	0.000088
N	162	P162L	cCt	cTt	1	1	AY.16.1	0.00047
N	162	P162P	ccT	ccA	1	1	AY.19	0.00114
N	162	P162del1	CCt	-Nt	1	1	AY.23	0.00007
N	162	P162P	ccT	ccC	1	1	AY.23	0.00007
N	162	P162A	Cct	Gct	1	1	AY.23	0.00007
N	162	P162S	Cct	Tct	1	1	AY.27	0.000065
N	162	P162H	cCt	cAt	1	1	AY.29	0.000016
N	162	P162del	CCT	---	1	1	AY.3	0.00001
N	162	P162P	ccT	ccC	1	1	AY.33	0.000067
N	162	P162S	Cct	Tct	1	1	AY.33	0.000067
N	162	P162S	Cct	Tct	1	1	AY.37	0.000316
N	162	P162S	Cct	Tct	1	1	AY.38	0.000499
N	162	P162R	cCT	cGA	1	1	AY.4	0.000002
N	162	P162del	CCT	---	1	1	AY.4	0.000002
N	162	P162S	Cct	Tct	1	1	AY.4.2	0.000022
N	162	P162P	ccT	ccC	1	1	AY.4.4	0.000409
N	162	P162H	cCt	cAt	1	1	AY.40	0.000964
N	162	P162del	CCT	---	1	1	AY.42	0.00004
N	162	P162H	cCt	cAt	1	1	AY.42	0.00004
N	162	P162T	Cct	Act	1	1	AY.43	0.000004
N	162	P162T	Cct	Act	1	1	AY.44	0.000006
N	162	P162A	Cct	Gct	1	1	AY.44	0.000006
N	162	P162S	Cct	Tct	1	1	AY.45	0.000122
N	162	P162H	cCt	cAt	1	1	AY.45	0.000122
N	162	P162L	cCt	cTt	1	1	AY.45	0.000122
N	162	P162S	Cct	Tct	1	1	AY.46	0.000104
N	162	P162P	ccT	ccC	1	1	AY.46	0.000104
N	162	P162R	cCt	cGt	1	1	AY.47	0.000031
N	162	P162H	cCt	cAt	1	1	AY.47	0.000031
N	162	P162S	Cct	Tct	1	1	AY.48	0.000465
N	162	P162P	ccT	ccG	1	1	AY.5	0.000021
N	162	P162S	Cct	Tct	1	1	AY.5	0.000021
N	162	P162P	ccT	ccC	1	1	AY.52	0.000814
N	162	P162T	Cct	Act	1	1	AY.55	0.000917
N	162	P162S	Cct	Tct	1	1	AY.7	0.000196
N	162	P162P	ccT	ccA	1	1	AY.71	0.000475
N	162	P162del	CCT	---	1	1	AY.75	0.000056
N	162	P162P	ccT	ccC	1	1	AY.75.1	0.00018
N	162	P162H	cCt	cAt	1	1	AY.79	0.001211
N	162	P162P	ccT	ccC	1	1	AY.8	0.000606
N	162	P162S	Cct	Tct	1	1	AY.85	0.000427
N	162	P162S	Cct	Tct	1	1	AY.9	0.000068
N	162	P162L	cCt	cTt	1	1	AY.9	0.000068
N	162	P162del	CCT	---	1	1	AY.9.2	0.000037
N	162	P162S	Cct	Tct	1	1	AY.90	0.000684
N	162	P162L	cCt	cTt	1	1	AY.91	0.00073
N	162	P162P	ccT	ccC	1	1	AY.98	0.000079
N	162	P162T	Cct	Act	1	1	AY.98	0.000079
N	162	P162L	cCt	cTt	1	1	AY.98.1	0.000048
N	162	P162P	ccT	ccC	1	1	AY.99	0.001049
N	162	P162D	CCt	GAt	1	1	B.1	0.000009
N	162	P162E	CCT	GAG	1	1	B.1	0.000009
N	162	P162M	CCT	ATG	1	1	B.1.1	0.000018
N	162	P162S	Cct	Tct	1	1	B.1.1.129	0.009174
N	162	P162P	ccT	ccG	1	1	B.1.1.148	0.008772
N	162	P162S	Cct	Tct	1	1	B.1.1.157	0.000913
N	162	P162P	ccT	ccG	1	1	B.1.1.157	0.000913
N	162	P162Q	cCT	cAA	1	1	B.1.1.170	0.001247
N	162	P162X	CCT	TAA	1	1	B.1.1.170	0.001247
N	162	P162K	CCT	AAA	1	1	B.1.1.170	0.001247
N	162	P162P	ccT	ccC	1	1	B.1.1.171	0.003676
N	162	P162X	CCT	TAA	1	1	B.1.1.189	0.001513
N	162	P162Q	cCT	cAA	1	1	B.1.1.189	0.001513
N	162	P162Y	CCt	TAt	1	1	B.1.1.189	0.001513
N	162	P162H	cCt	cAt	1	1	B.1.1.189	0.001513
N	162	P162X	CCT	TAA	1	1	B.1.1.193	0.111111
N	162	P162F	CCt	TTt	1	1	B.1.1.193	0.111111
N	162	P162Q	cCT	cAA	1	1	B.1.1.193	0.111111
N	162	P162Y	CCt	TAt	1	1	B.1.1.193	0.111111
N	162	P162P	ccT	ccA	1	1	B.1.1.193	0.111111
N	162	P162H	cCt	cAt	1	1	B.1.1.193	0.111111
N	162	P162P	ccT	ccC	1	1	B.1.1.198	0.001468
N	162	P162S	Cct	Tct	1	1	B.1.1.200	0.007463
N	162	P162P	ccT	ccC	1	1	B.1.1.253	0.002506
N	162	P162Y	CCt	TAt	1	1	B.1.1.277	0.000759
N	162	P162Q	cCT	cAA	1	1	B.1.1.277	0.000759
N	162	P162X	CCT	TAA	1	1	B.1.1.277	0.000759
N	162	P162P	ccT	ccA	1	1	B.1.1.277	0.000759
N	162	P162H	cCt	cAt	1	1	B.1.1.277	0.000759
N	162	P162L	cCt	cTt	1	1	B.1.1.297	0.002237
N	162	P162X	CCT	TAA	1	1	B.1.1.301	0.001179
N	162	P162Q	cCT	cAA	1	1	B.1.1.301	0.001179
N	162	P162del1	ccT	cc-	1	1	B.1.1.306	0.000438
N	162	P162L	cCt	cTt	1	1	B.1.1.312	0.001912
N	162	P162L	cCt	cTt	1	1	B.1.1.317	0.000412
N	162	P162F	CCt	TTt	1	1	B.1.1.317	0.000412
N	162	P162S	Cct	Tct	1	1	B.1.1.318	0.000302
N	162	P162del	CCT	---	1	1	B.1.1.33	0.000421
N	162	P162S	Cct	Tct	1	1	B.1.1.33	0.000421
N	162	P162P	ccT	ccC	1	1	B.1.1.348	0.000796
N	162	P162L	cCt	cTt	1	1	B.1.1.374	0.002375
N	162	P162S	Cct	Tct	1	1	B.1.1.413	0.006897
N	162	P162R	cCT	cGA	1	1	B.1.1.420	0.001006
N	162	P162P	ccT	ccC	1	1	B.1.1.507	0.008696
N	162	P162Q	cCT	cAA	1	1	B.1.1.515	0.02
N	162	P162X	CCT	TAA	1	1	B.1.1.515	0.02
N	162	P162K	CCT	AAA	1	1	B.1.1.515	0.02
N	162	P162P	ccT	ccC	1	1	B.1.1.56	0.017857
N	162	P162Y	CCt	TAt	1	1	B.1.1.7	0.000001
N	162	P162N	CCt	AAt	1	1	B.1.1.7	0.000001
N	162	P162X	CCT	TAA	1	1	B.1.1.7	0.000001
N	162	P162A	Cct	Gct	1	1	B.1.1.7	0.000001
N	162	P162F	CCt	TTt	1	1	B.1.1.7	0.000001
N	162	P162K	CCT	AAG	1	1	B.1.1.7	0.000001
N	162	P162P	ccT	ccC	1	1	B.1.103	0.019231
N	162	P162L	cCt	cTt	1	1	B.1.127	0.002198
N	162	P162F	CCt	TTt	1	1	B.1.146	0.004237
N	162	P162L	cCt	cTt	1	1	B.1.146	0.004237
N	162	P162del	CCT	---	1	1	B.1.160	0.000031
N	162	P162P	ccT	ccC	1	1	B.1.177.12	0.000152
N	162	P162P	ccT	ccC	1	1	B.1.177.20	0.001517
N	162	P162P	ccT	ccA	1	1	B.1.177.33	0.001645
N	162	P162F	CCt	TTt	1	1	B.1.177.33	0.001645
N	162	P162S	Cct	Tct	1	1	B.1.177.35	0.000691
N	162	P162F	CCt	TTt	1	1	B.1.177.35	0.000691
N	162	P162L	cCt	cTt	1	1	B.1.177.35	0.000691
N	162	P162Q	cCT	cAA	1	1	B.1.177.44	0.000519
N	162	P162X	CCT	TAA	1	1	B.1.177.44	0.000519
N	162	P162P	ccT	ccC	1	1	B.1.177.50	0.004695
N	162	P162P	ccT	ccC	1	1	B.1.177.57	0.000281
N	162	P162P	ccT	ccC	1	1	B.1.177.60	0.000218
N	162	P162del	CCT	---	1	1	B.1.177.62	0.001192
N	162	P162del	CCT	---	1	1	B.1.177.68	0.015152
N	162	P162F	CCt	TTt	1	1	B.1.177.81	0.000189
N	162	P162L	cCt	cTt	1	1	B.1.177.81	0.000189
N	162	P162del	CCT	---	1	1	B.1.177.83	0.001481
N	162	P162del1	Cct	-ct	1	1	B.1.177.83	0.001481
N	162	P162S	Cct	Tct	1	1	B.1.177.83	0.001481
N	162	P162del	CCT	---	1	1	B.1.2	0.000009
N	162	P162P	ccT	ccC	1	1	B.1.210	0.002132
N	162	P162Q	cCT	cAA	1	1	B.1.221	0.000071
N	162	P162K	CCT	AAA	1	1	B.1.221	0.000071
N	162	P162X	CCT	TAA	1	1	B.1.221	0.000071
N	162	P162S	Cct	Tct	1	1	B.1.222	0.001692
N	162	P162S	Cct	Tct	1	1	B.1.232	0.000537
N	162	P162P	ccT	ccC	1	1	B.1.234	0.000132
N	162	P162L	cCt	cTt	1	1	B.1.234	0.000132
N	162	P162L	cCt	cTt	1	1	B.1.243	0.00007
N	162	P162S	CCT	AGC	1	1	B.1.243	0.00007
N	162	P162Y	CCt	TAt	1	1	B.1.258.11	0.000396
N	162	P162F	CCt	TTt	1	1	B.1.284	0.013158
N	162	P162P	ccT	ccA	1	1	B.1.284	0.013158
N	162	P162E	CCT	GAA	1	1	B.1.293	0.0125
N	162	P162Q	cCT	cAA	1	1	B.1.293	0.0125
N	162	P162X	CCT	TAA	1	1	B.1.293	0.0125
N	162	P162P	ccT	ccC	1	1	B.1.301	0.005917
N	162	P162P	ccT	ccC	1	1	B.1.329	0.000608
N	162	P162S	Cct	Tct	1	1	B.1.349	0.000715
N	162	P162S	Cct	Tct	1	1	B.1.36	0.000146
N	162	P162L	cCt	cTt	1	1	B.1.36	0.000146
N	162	P162del1	ccT	cc-	1	1	B.1.36	0.000146
N	162	P162F	CCt	TTt	1	1	B.1.36	0.000146
N	162	P162S	Cct	Tct	1	1	B.1.36.1	0.00114
N	162	P162F	CCt	TTt	1	1	B.1.36.24	0.006173
N	162	P162S	Cct	Tct	1	1	B.1.36.24	0.006173
N	162	P162L	cCt	cTt	1	1	B.1.36.24	0.006173
N	162	P162P	ccT	ccC	1	1	B.1.36.27	0.000763
N	162	P162del1	ccT	cc-	1	1	B.1.36.29	0.000517
N	162	P162L	cCt	cTt	1	1	B.1.36.38	0.001642
N	162	P162P	ccT	ccC	1	1	B.1.369	0.000285
N	162	P162L	cCt	cTt	1	1	B.1.425	0.002994
N	162	P162del	CCT	---	1	1	B.1.427	0.00005
N	162	P162L	cCt	cTt	1	1	B.1.427	0.00005
N	162	P162H	cCt	cAt	1	1	B.1.429	0.000024
N	162	P162P	ccT	ccC	1	1	B.1.466.2	0.000391
N	162	P162P	ccT	ccC	1	1	B.1.525	0.000113
N	162	P162del1	ccT	cc-	1	1	B.1.525	0.000113
N	162	P162S	Cct	Tct	1	1	B.1.525	0.000113
N	162	P162S	Cct	Tct	1	1	B.1.526	0.000024
N	162	P162P	ccT	ccC	1	1	B.1.541	0.004425
N	162	P162S	Cct	Tct	1	1	B.1.565	0.00081
N	162	P162L	cCt	cTt	1	1	B.1.567	0.003333
N	162	P162Q	cCT	cAA	1	1	B.1.576	0.000907
N	162	P162H	cCt	cAt	1	1	B.1.576	0.000907
N	162	P162P	ccT	ccA	1	1	B.1.576	0.000907
N	162	P162C	CCt	TGt	1	1	B.1.576	0.000907
N	162	P162Y	CCt	TAt	1	1	B.1.576	0.000907
N	162	P162P	ccT	ccC	1	1	B.1.577	0.000687
N	162	P162H	cCt	cAt	1	1	B.1.588	0.00091
N	162	P162T	Cct	Act	1	1	B.1.596	0.000087
N	162	P162del	CCT	---	1	1	B.1.596	0.000087
N	162	P162A	Cct	Gct	1	1	B.1.596	0.000087
N	162	P162C	CCt	TGt	1	1	B.1.609	0.000479
N	162	P162H	cCt	cAt	1	1	B.1.609	0.000479
N	162	P162X	CCT	TGA	1	1	B.1.609	0.000479
N	162	P162M	CCT	ATG	1	1	B.1.609	0.000479
N	162	P162Y	CCt	TAt	1	1	B.1.609	0.000479
N	162	P162W	CCT	TGG	1	1	B.1.609	0.000479
N	162	P162S	Cct	Tct	1	1	B.1.617.1	0.000129
N	162	P162del	CCT	---	1	1	B.1.617.2	0.000004
N	162	P162del1	ccT	cc-	1	1	B.1.617.3	0.002985
N	162	P162P	ccT	ccA	1	1	B.1.618	0.004032
N	162	P162P	ccT	ccC	1	1	B.1.621	0.000089
N	162	P162P	ccT	ccC	1	1	B.1.623	0.000536
N	162	P162P	ccT	ccC	1	1	B.1.627	0.00202
N	162	P162X	CCT	TAA	1	1	B.1.78	0.008547
N	162	P162K	CCT	AAA	1	1	B.1.78	0.008547
N	162	P162Q	cCT	cAA	1	1	B.1.78	0.008547
N	162	P162P	ccT	ccA	1	1	B.1.83	0.015385
N	162	P162F	CCt	TTt	1	1	B.1.9.4	0.006135
N	162	P162L	cCt	cTt	1	1	B.1.9.4	0.006135
N	162	P162S	Cct	Tct	1	1	B.1.9.5	0.005682
N	162	P162P	ccT	ccC	1	1	B.29	0.003509
N	162	P162S	Cct	Tct	1	1	B.3	0.000831
N	162	P162P	ccT	ccC	1	1	C.30	0.001727
N	162	P162H	cCt	cAt	1	1	C.37	0.000116
N	162	P162P	ccT	ccC	1	1	C.37	0.000116
N	162	P162L	cCt	cTt	1	1	C.37	0.000116
N	162	P162F	CCt	TTt	1	1	K.1	0.02381
N	162	P162P	ccT	ccC	1	1	K.1	0.02381
N	162	P162L	cCt	cTt	1	1	K.1	0.02381
N	162	P162H	cCt	cAt	1	1	P.1	0.000016
N	162	P162del	CCT	---	1	1	P.1.1	0.000318
N	162	P162P	ccT	ccC	1	1	P.1.1	0.000318
N	162	P162P	ccT	ccC	1	1	P.1.12	0.000484
N	162	P162S	Cct	Tct	1	1	P.1.14	0.000048
N	162	P162P	ccT	ccC	1	1	P.1.15	0.000232
N	162	P162P	ccT	ccG	1	1	P.1.16	0.000374
N	162	P162L	cCt	cTt	1	1	P.1.16	0.000374
N	162	P162H	cCt	cAt	1	1	Q.1	0.000126
N	162	P162P	ccT	ccC	1	1	Q.8	0.000165
N	162	P162P	ccT	ccC	1	1	W.4	0.001351

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.