CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 161

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N161L161FnonsynCttTtt22802280128754-28756
N161L161LsynctTctC6996100.87267528754-28756
N161L161LsynctTctG699630.090128828754-28756
N161L161LsynctTctA699260.03719628754-28756
N161L161InonsynCttAtt144144128754-28756
N161L161deldelCTT---3232128754-28756
N161L161VnonsynCttGtt3131128754-28756
N161L161HnonsyncTtcAt15120.828754-28756
N161L161HnonsyncTTcAC1530.228754-28756
N161L161PnonsyncTtcCt77128754-28756
N161L161del2delcTTc--77128754-28756
N161L161del1delctTct-11128754-28756
N161L161TnonsynCTTACA11128754-28756

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N161L161FCttTtt22802280All0.000436
N161L161LctTctC610699All0.000117
N161L161LctTctG63699All0.000012
N161L161LctTctA26699All0.000005
N161L161FCttTtt384384B.1.1.70.000344
N161L161FCttTtt227227AY.40.000353
N161L161FCttTtt206206AY.39.10.00816
N161L161LctTctC202202S.11
N161L161ICttAtt144144All0.000028
N161L161FCttTtt135135AY.430.000598
N161L161FCttTtt124124B.1.617.20.000467
N161L161FCttTtt118118AY.1030.000733
N161L161FCttTtt103103AY.30.001024
N161L161FCttTtt101101AY.50.002086
N161L161FCttTtt7777AY.1020.002042
N161L161FCttTtt6464AY.440.00039
N161L161LctTctC6161B.1.1.2170.221818
N161L161FCttTtt5252AY.250.000313
N161L161FCttTtt5050B.1.1770.000658
N161L161LctTctC4248B.1.1.70.000038
N161L161LctTctG548B.1.1.70.000004
N161L161LctTctA148B.1.1.70.000001
N161L161ICttAtt4646B.1.1.70.000041
N161L161LctTctC4446B.1.617.20.000166
N161L161LctTctG246B.1.617.20.000008
N161L161LctTctC4343AY.660.045989
N161L161LctTctC3742AY.40.000058
N161L161LctTctA442AY.40.000006
N161L161LctTctG142AY.40.000002
N161L161FCttTtt4141B.1.20.000361
N161L161ICttAtt3737AY.1190.001306
N161L161FCttTtt3535B.1.10.000635
N161L161delCTT---3232All0.000006
N161L161LctTctG3232B.1.1.2840.003437
N161L161VCttGtt3131All0.000006
N161L161FCttTtt3131AY.4.20.000672
N161L161LctTctC2323AY.360.003409
N161L161FCttTtt2323B.1.1.370.004436
N161L161LctTctC2323B.1.20.000203
N161L161FCttTtt1919AY.390.00047
N161L161FCttTtt1919AY.60.000781
N161L161LctTctC1919B.1.2430.001322
N161L161FCttTtt1818B.1.1.2980.015517
N161L161LctTctC1316AY.440.000079
N161L161LctTctG316AY.440.000018
N161L161FCttTtt1616C.370.001857
N161L161HcTtcAt1215All0.000002
N161L161HcTTcAC315All0.000001
N161L161LctTctC1215B.1.10.000218
N161L161LctTctG315B.1.10.000054
N161L161VCttGtt1515B.1.1.70.000013
N161L161LctTctC914AY.260.000255
N161L161LctTctG514AY.260.000142
N161L161FCttTtt1313AY.470.000404
N161L161FCttTtt1313AY.99.20.001198
N161L161FCttTtt1212B.10.00011
N161L161LctTctA1212B.1.1.3110.004298
N161L161LctTctC1111AY.290.000174
N161L161FCttTtt1111B.1.1.5190.000437
N161L161FCttTtt1111B.1.5960.000959
N161L161FCttTtt1010AY.230.000697
N161L161ICttAtt1010AY.40.000016
N161L161FCttTtt1010B.1.4290.000235
N161L161FCttTtt1010B.1.5260.000235
N161L161FCttTtt99AY.1000.000414
N161L161FCttTtt99AY.260.000255
N161L161FCttTtt99B.1.617.10.001161
N161L161FCttTtt88AY.1070.003728
N161L161FCttTtt88AY.290.000126
N161L161FCttTtt88AY.750.000448
N161L161FCttTtt88AY.90.000541
N161L161delCTT---88B.1.1.70.000007
N161L161FCttTtt88P.10.000126
N161L161FCttTtt88P.1.60.015564
N161L161del2cTTc--77All0.000001
N161L161PcTtcCt77All0.000001
N161L161ICttAtt77AY.1030.000043
N161L161FCttTtt77AY.75.10.001262
N161L161FCttTtt77AY.9.20.000257
N161L161FCttTtt77AY.910.005113
N161L161LctTctA67B0.000767
N161L161LctTctG17B0.000128
N161L161FCttTtt66AY.200.000233
N161L161ICttAtt66AY.250.000036
N161L161FCttTtt66AY.330.000401
N161L161LctTctC66AY.39.10.000238
N161L161FCttTtt66AY.460.000624
N161L161FCttTtt66B.1.177.540.003639
N161L161ICttAtt66B.1.2430.000418
N161L161FCttTtt66B.1.5250.000679
N161L161FCttTtt55AY.120.10.001605
N161L161FCttTtt55AY.450.000608
N161L161LctTctC55B.1.1.4200.00503
N161L161FCttTtt55B.1.1600.000156
N161L161FCttTtt55B.1.2210.000355
N161L161ICttAtt55B.1.617.20.000019
N161L161delCTT---44AY.250.000024
N161L161LctTctG44AY.30.00004
N161L161FCttTtt44AY.340.000388
N161L161FCttTtt44AY.370.001264
N161L161delCTT---44AY.430.000018
N161L161FCttTtt44AY.590.002119
N161L161FCttTtt44AY.870.003331
N161L161FCttTtt44AY.98.10.000194
N161L161LctTctC44B.10.000037
N161L161FCttTtt44B.1.1.1890.006051
N161L161FCttTtt44B.1.1.4340.001394
N161L161LctTctC44B.1.2210.000284
N161L161FCttTtt44B.1.2400.000862
N161L161LctTctC44B.1.5960.000349
N161L161FCttTtt44B.1.6210.000354
N161L161FCttTtt33A.2.5.10.014423
N161L161FCttTtt33A.2.5.20.004717
N161L161LctTctC33AY.1020.00008
N161L161LctTctC33AY.1050.001929
N161L161FCttTtt33AY.1170.000254
N161L161FCttTtt33AY.1200.000112
N161L161FCttTtt33AY.300.001187
N161L161VCttGtt33AY.40.000005
N161L161LctTctG33AY.570.001969
N161L161FCttTtt33AY.920.000862
N161L161LctTctC33AY.98.10.000145
N161L161delCTT---33B.1.1.4200.003018
N161L161LctTctC33B.1.1770.00004
N161L161FCttTtt33B.1.177.120.000455
N161L161FCttTtt33B.1.177.90.003995
N161L161FCttTtt33B.1.3460.003932
N161L161FCttTtt33B.1.3510.000089
N161L161LctTctC23B.1.3510.000059
N161L161LctTctA13B.1.3510.00003
N161L161FCttTtt33B.1.360.000438
N161L161LctTctC33B.1.4270.000151
N161L161FCttTtt33B.1.4360.003086
N161L161FCttTtt33B.1.5170.001281
N161L161ICttAtt33B.1.617.10.000387
N161L161FCttTtt33D.20.000225
N161L161FCttTtt22AY.1010.000981
N161L161FCttTtt22AY.1100.000225
N161L161FCttTtt22AY.116.10.000623
N161L161VCttGtt22AY.1170.000169
N161L161FCttTtt22AY.1180.000125
N161L161FCttTtt22AY.1190.000071
N161L161LctTctC22AY.1200.000074
N161L161FCttTtt22AY.210.003795
N161L161FCttTtt22AY.34.10.00102
N161L161ICttAtt22AY.390.000049
N161L161LctTctC22AY.390.000049
N161L161FCttTtt22AY.420.00008
N161L161LctTctC22AY.430.000009
N161L161ICttAtt22AY.440.000012
N161L161FCttTtt22AY.46.60.000144
N161L161FCttTtt22AY.540.000191
N161L161FCttTtt22AY.680.000547
N161L161FCttTtt22AY.850.000854
N161L161ICttAtt22AY.90.000135
N161L161ICttAtt22AY.910.001461
N161L161LctTctC22AY.980.000158
N161L161FCttTtt22AY.980.000158
N161L161FCttTtt22AY.990.002099
N161L161del2cTTc--22B.1.10.000036
N161L161FCttTtt22B.1.1.280.000622
N161L161del2cTTc--22B.1.1.280.000622
N161L161FCttTtt22B.1.1.3040.005618
N161L161FCttTtt22B.1.1.3260.003521
N161L161FCttTtt22B.1.1.3290.007692
N161L161ICttAtt22B.1.1.5190.000079
N161L161FCttTtt22B.1.1.5230.003125
N161L161FCttTtt22B.1.1.700.000682
N161L161LctTctG22B.1.1600.000062
N161L161HcTtcAt12B.1.1770.000013
N161L161HcTTcAC12B.1.1770.000013
N161L161FCttTtt22B.1.177.70.00033
N161L161delCTT---22B.1.177.750.002081
N161L161delCTT---22B.1.177.830.002963
N161L161FCttTtt22B.1.2580.000133
N161L161FCttTtt22B.1.3110.000549
N161L161PcTtcCt22B.1.4270.000101
N161L161FCttTtt22B.1.4270.000101
N161L161ICttAtt22B.1.4290.000047
N161L161HcTtcAt22B.1.4290.000047
N161L161FCttTtt22B.1.466.20.000782
N161L161FCttTtt22B.1.4700.002809
N161L161FCttTtt22B.1.5610.000794
N161L161FCttTtt22B.1.6280.000705
N161L161LctTctC22B.1.6370.000146
N161L161FCttTtt22B.1.930.001867
N161L161LctTctC22P.10.000032
N161L161FCttTtt22P.20.000373
N161L161FCttTtt22Q.20.001227
N161L161ICttAtt22Q.80.00033
N161L161FCttTtt11A.2.50.000499
N161L161FCttTtt11A.270.001656
N161L161del1ctTct-11All0
N161L161TCTTACA11All0
N161L161FCttTtt11AY.10.000396
N161L161VCttGtt11AY.1000.000046
N161L161ICttAtt11AY.1020.000027
N161L161VCttGtt11AY.1030.000006
N161L161LctTctC11AY.1030.000006
N161L161HcTtcAt11AY.1030.000006
N161L161PcTtcCt11AY.1030.000006
N161L161PcTtcCt11AY.1110.000183
N161L161ICttAtt11AY.1110.000183
N161L161LctTctC11AY.1130.000142
N161L161FCttTtt11AY.1130.000142
N161L161FCttTtt11AY.1140.000231
N161L161LctTctC11AY.1180.000063
N161L161VCttGtt11AY.1200.000037
N161L161FCttTtt11AY.1210.000135
N161L161LctTctC11AY.140.000088
N161L161FCttTtt11AY.160.00038
N161L161LctTctC11AY.200.000039
N161L161LctTctC11AY.250.000006
N161L161FCttTtt11AY.29.10.000221
N161L161delCTT---11AY.30.00001
N161L161FCttTtt11AY.3.10.000085
N161L161FCttTtt11AY.320.000532
N161L161VCttGtt11AY.330.000067
N161L161FCttTtt11AY.350.000233
N161L161FCttTtt11AY.360.000148
N161L161ICttAtt11AY.39.10.00004
N161L161delCTT---11AY.40.000002
N161L161HcTTcAC11AY.40.000002
N161L161FCttTtt11AY.4.10.000737
N161L161ICttAtt11AY.4.20.000022
N161L161VCttGtt11AY.4.2.10.000149
N161L161PcTtcCt11AY.4.40.000409
N161L161FCttTtt11AY.4.50.000107
N161L161LctTctC11AY.420.00004
N161L161del2cTTc--11AY.420.00004
N161L161VCttGtt11AY.430.000004
N161L161LctTctC11AY.460.000104
N161L161FCttTtt11AY.46.20.000635
N161L161FCttTtt11AY.46.40.000165
N161L161FCttTtt11AY.46.50.000198
N161L161HcTtcAt11AY.470.000031
N161L161LctTctC11AY.50.000021
N161L161ICttAtt11AY.50.000021
N161L161FCttTtt11AY.5.30.000337
N161L161FCttTtt11AY.5.40.000277
N161L161FCttTtt11AY.510.000909
N161L161LctTctC11AY.530.000288
N161L161FCttTtt11AY.620.000436
N161L161FCttTtt11AY.660.00107
N161L161FCttTtt11AY.690.000187
N161L161FCttTtt11AY.7.10.000113
N161L161FCttTtt11AY.7.20.000559
N161L161FCttTtt11AY.790.001211
N161L161FCttTtt11AY.840.000437
N161L161FCttTtt11AY.890.004902
N161L161delCTT---11AY.9.20.000037
N161L161FCttTtt11AY.930.000273
N161L161HcTtcAt11AY.980.000079
N161L161delCTT---11B.10.000009
N161L161ICttAtt11B.1.10.000018
N161L161HcTtcAt11B.1.10.000018
N161L161PcTtcCt11B.1.10.000018
N161L161FCttTtt11B.1.1.2890.002083
N161L161FCttTtt11B.1.1.2910.000742
N161L161HcTtcAt11B.1.1.3010.001179
N161L161FCttTtt11B.1.1.3020.002075
N161L161FCttTtt11B.1.1.3180.000302
N161L161del2cTTc--11B.1.1.330.000421
N161L161FCttTtt11B.1.1.3480.000796
N161L161LctTctG11B.1.1.3740.002375
N161L161FCttTtt11B.1.1.390.00051
N161L161HcTTcAC11B.1.1.4200.001006
N161L161PcTtcCt11B.1.1.430.014925
N161L161ICttAtt11B.1.1.4340.000349
N161L161FCttTtt11B.1.1.4370.010417
N161L161FCttTtt11B.1.1.440.00241
N161L161LctTctC11B.1.1.4660.008696
N161L161LctTctC11B.1.1.540.003021
N161L161del2cTTc--11B.1.1.70.000001
N161L161HcTtcAt11B.1.1.70.000001
N161L161HcTtcAt11B.1.1.700.000341
N161L161FCttTtt11B.1.1.740.00431
N161L161delCTT---11B.1.1600.000031
N161L161LctTctG11B.1.160.80.001289
N161L161delCTT---11B.1.1770.000013
N161L161ICttAtt11B.1.1770.000013
N161L161FCttTtt11B.1.177.100.000878
N161L161LctTctA11B.1.177.150.000631
N161L161FCttTtt11B.1.177.180.00116
N161L161FCttTtt11B.1.177.190.001431
N161L161FCttTtt11B.1.177.40.000211
N161L161ICttAtt11B.1.177.480.003125
N161L161VCttGtt11B.1.177.630.002703
N161L161VCttGtt11B.1.177.830.001481
N161L161FCttTtt11B.1.177.830.001481
N161L161FCttTtt11B.1.177.850.005435
N161L161FCttTtt11B.1.2320.000537
N161L161FCttTtt11B.1.2340.000132
N161L161FCttTtt11B.1.2430.00007
N161L161LctTctC11B.1.2790.000514
N161L161FCttTtt11B.1.2930.0125
N161L161FCttTtt11B.1.3200.001245
N161L161LctTctC11B.1.3380.008621
N161L161HcTtcAt11B.1.3510.00003
N161L161FCttTtt11B.1.3600.012658
N161L161ICttAtt11B.1.3610.001289
N161L161FCttTtt11B.1.4040.001302
N161L161LctTctA11B.1.4220.000812
N161L161delCTT---11B.1.4270.00005
N161L161VCttGtt11B.1.4280.00102
N161L161LctTctC11B.1.4530.003236
N161L161TCTTACA11B.1.5250.000113
N161L161LctTctC11B.1.5260.000024
N161L161FCttTtt11B.1.5640.000426
N161L161VCttGtt11B.1.5750.000303
N161L161VCttGtt11B.1.6090.000479
N161L161HcTtcAt11B.1.617.20.000004
N161L161delCTT---11B.1.617.20.000004
N161L161FCttTtt11B.1.6230.000536
N161L161FCttTtt11B.1.6370.000073
N161L161FCttTtt11B.40.002208
N161L161FCttTtt11C.180.002591
N161L161LctTctC11C.350.000774
N161L161delCTT---11P.10.000016
N161L161del1ctTct-11P.1.10.000318
N161L161FCttTtt11P.1.140.000048
N161L161LctTctC11P.1.140.000048
N161L161FCttTtt11P.1.150.000232
N161L161FCttTtt11P.1.170.000162
N161L161FCttTtt11Q.10.000126
N161L161LctTctC11Q.20.000613
N161L161FCttTtt11Q.80.000165