CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 16 & Codon = acA

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
N	16	T16T		syn	acG	acA	6743	2063	0.305947	28319-28321

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
N	16	T16T	acG	acA	2063	6743	All	0.000395
N	16	T16T	acG	acA	1132	1132	B.1.177.10	0.993854
N	16	T16T	acG	acA	63	1130	B.1.1.7	0.000056
N	16	T16T	acG	acA	29	893	AY.4	0.000045
N	16	T16T	acG	acA	72	176	B.1.2	0.000634
N	16	T16T	acG	acA	54	175	B.1	0.000495
N	16	T16T	acG	acA	8	146	B.1.617.2	0.00003
N	16	T16T	acG	acA	37	119	B.1.177	0.000487
N	16	T16T	acG	acA	71	115	B.1.1	0.001288
N	16	T16T	acG	acA	1	114	AY.74	0.000116
N	16	T16T	acG	acA	79	105	B.1.429	0.001859
N	16	T16T	acG	acA	1	95	B.1.1.50	0.000679
N	16	T16T	acG	acA	10	87	AY.103	0.000062
N	16	T16T	acG	acA	8	77	AY.43	0.000035
N	16	T16T	acG	acA	9	67	AY.3	0.00009
N	16	T16T	acG	acA	10	64	P.1	0.000158
N	16	T16T	acG	acA	9	60	B.1.160	0.000281
N	16	T16T	acG	acA	12	52	AY.25	0.000072
N	16	T16T	acG	acA	40	52	B.1.1.519	0.001588
N	16	T16T	acG	acA	5	51	AY.44	0.00003
N	16	T16T	acG	acA	34	39	B.1.1.1	0.011107
N	16	T16T	acG	acA	2	32	AY.46.6	0.000144
N	16	T16T	acG	acA	27	31	B.1.1.63	0.010417
N	16	T16T	acG	acA	29	29	B.1.1.434	0.010108
N	16	T16T	acG	acA	28	29	B.1.466.2	0.010955
N	16	T16T	acG	acA	5	27	B.1.351	0.000149
N	16	T16T	acG	acA	24	24	B.1.1.70	0.008186
N	16	T16T	acG	acA	1	24	B.1.243	0.00007
N	16	T16T	acG	acA	14	21	B.1.1.216	0.012467
N	16	T16T	acG	acA	13	20	B.1.258	0.000865
N	16	T16T	acG	acA	1	20	B.1.526	0.000024
N	16	T16T	acG	acA	17	19	B.1.1.305	0.065637
N	16	T16T	acG	acA	3	16	AY.121	0.000406
N	16	T16T	acG	acA	4	14	AY.4.2	0.000087
N	16	T16T	acG	acA	11	14	AY.98	0.000869
N	16	T16T	acG	acA	10	13	P.1.14	0.000478
N	16	T16T	acG	acA	2	11	AY.6	0.000082
N	16	T16T	acG	acA	11	11	B.1.527	0.040741
N	16	T16T	acG	acA	1	9	AY.118	0.000063
N	16	T16T	acG	acA	1	9	AY.29	0.000016
N	16	T16T	acG	acA	1	9	AY.75	0.000056
N	16	T16T	acG	acA	9	9	B.1.177.72	0.030508
N	16	T16T	acG	acA	1	9	B.1.396	0.000706
N	16	T16T	acG	acA	3	8	AY.9.2	0.00011
N	16	T16T	acG	acA	8	8	B.1.1.354	0.035088
N	16	T16T	acG	acA	3	8	B.1.36	0.000438
N	16	T16T	acG	acA	1	7	AY.48	0.000465
N	16	T16T	acG	acA	1	7	AY.61	0.000105
N	16	T16T	acG	acA	1	6	AY.20	0.000039
N	16	T16T	acG	acA	6	6	B.1.1.265	0.018927
N	16	T16T	acG	acA	6	6	B.1.1.291	0.004454
N	16	T16T	acG	acA	6	6	B.1.36.26	0.017143
N	16	T16T	acG	acA	2	6	P.1.15	0.000465
N	16	T16T	acG	acA	4	5	B.1.1.25	0.002274
N	16	T16T	acG	acA	2	5	B.1.525	0.000226
N	16	T16T	acG	acA	2	5	B.1.621	0.000177
N	16	T16T	acG	acA	4	4	AY.114	0.000924
N	16	T16T	acG	acA	1	4	AY.46	0.000104
N	16	T16T	acG	acA	1	4	AY.47	0.000031
N	16	T16T	acG	acA	3	4	AY.77	0.003382
N	16	T16T	acG	acA	4	4	B.1.1.28	0.001245
N	16	T16T	acG	acA	1	4	B.1.1.448	0.002033
N	16	T16T	acG	acA	4	4	B.1.1.526	0.014184
N	16	T16T	acG	acA	4	4	B.1.111	0.0047
N	16	T16T	acG	acA	1	4	B.1.36.29	0.000517
N	16	T16T	acG	acA	4	4	B.1.36.9	0.012862
N	16	T16T	acG	acA	2	4	B.1.582	0.000981
N	16	T16T	acG	acA	2	3	A.23.1	0.001408
N	16	T16T	acG	acA	2	3	AY.111	0.000366
N	16	T16T	acG	acA	3	3	AY.29.1	0.000662
N	16	T16T	acG	acA	1	3	AY.34	0.000097
N	16	T16T	acG	acA	3	3	AY.7.2	0.001678
N	16	T16T	acG	acA	2	3	B.1.1.277	0.001517
N	16	T16T	acG	acA	1	3	B.1.1.317	0.000412
N	16	T16T	acG	acA	3	3	B.1.1.368	0.009259
N	16	T16T	acG	acA	2	3	B.1.177.73	0.001133
N	16	T16T	acG	acA	2	3	B.1.177.8	0.001505
N	16	T16T	acG	acA	1	3	B.1.36.18	0.00042
N	16	T16T	acG	acA	1	3	B.1.595	0.000261
N	16	T16T	acG	acA	3	3	B.40	0.001093
N	16	T16T	acG	acA	2	3	C.36	0.001821
N	16	T16T	acG	acA	2	2	AY.39.1	0.000079
N	16	T16T	acG	acA	1	2	AY.69	0.000187
N	16	T16T	acG	acA	1	2	AY.75.1	0.00018
N	16	T16T	acG	acA	1	2	B.1.1.141	0.002012
N	16	T16T	acG	acA	2	2	B.1.1.159	0.009346
N	16	T16T	acG	acA	2	2	B.1.1.198	0.002937
N	16	T16T	acG	acA	2	2	B.1.1.378	0.014599
N	16	T16T	acG	acA	2	2	B.1.1.432	0.002532
N	16	T16T	acG	acA	2	2	B.1.192	0.018519
N	16	T16T	acG	acA	2	2	B.1.201	0.011364
N	16	T16T	acG	acA	1	2	B.1.258.17	0.000104
N	16	T16T	acG	acA	2	2	B.1.36.10	0.009569
N	16	T16T	acG	acA	2	2	B.1.466.1	0.014388
N	16	T16T	acG	acA	2	2	B.1.524	0.002813
N	16	T16T	acG	acA	2	2	B.1.609	0.000959
N	16	T16T	acG	acA	2	2	C.16	0.002121
N	16	T16T	acG	acA	2	2	C.23	0.011628
N	16	T16T	acG	acA	1	2	P.1.17	0.000162
N	16	T16T	acG	acA	1	2	Q.3	0.000145
N	16	T16T	acG	acA	1	1	A.19	0.009434
N	16	T16T	acG	acA	1	1	AY.108	0.001103
N	16	T16T	acG	acA	1	1	AY.4.1	0.000737
N	16	T16T	acG	acA	1	1	AY.5.4	0.000277
N	16	T16T	acG	acA	1	1	B	0.000128
N	16	T16T	acG	acA	1	1	B.1.1.220	0.001859
N	16	T16T	acG	acA	1	1	B.1.1.222	0.000204
N	16	T16T	acG	acA	1	1	B.1.1.273	0.006757
N	16	T16T	acG	acA	1	1	B.1.1.306	0.000438
N	16	T16T	acG	acA	1	1	B.1.1.369	0.000446
N	16	T16T	acG	acA	1	1	B.1.1.37	0.000193
N	16	T16T	acG	acA	1	1	B.1.1.372	0.000689
N	16	T16T	acG	acA	1	1	B.1.1.420	0.001006
N	16	T16T	acG	acA	1	1	B.1.1.46	0.004367
N	16	T16T	acG	acA	1	1	B.1.1.521	0.005348
N	16	T16T	acG	acA	1	1	B.1.1.58	0.005376
N	16	T16T	acG	acA	1	1	B.1.177.23	0.003236
N	16	T16T	acG	acA	1	1	B.1.177.42	0.000894
N	16	T16T	acG	acA	1	1	B.1.314	0.007519
N	16	T16T	acG	acA	1	1	B.1.320	0.001245
N	16	T16T	acG	acA	1	1	B.1.351.3	0.000876
N	16	T16T	acG	acA	1	1	B.1.36.8	0.001
N	16	T16T	acG	acA	1	1	B.1.381	0.007812
N	16	T16T	acG	acA	1	1	B.1.425	0.002994
N	16	T16T	acG	acA	1	1	B.1.497	0.000315
N	16	T16T	acG	acA	1	1	B.1.9.4	0.006135
N	16	T16T	acG	acA	1	1	C.33	0.058824
N	16	T16T	acG	acA	1	1	C.9	0.030303
N	16	T16T	acG	acA	1	1	N.6	0.007092
N	16	T16T	acG	acA	1	1	P.1.12	0.000484

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.