CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 16 & Codon = aTg

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N16T16MnonsynaCgaTg24062406128319-28321

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N16T16MaCgaTg24062406All0.00046
N16T16MaCgaTg377377B.1.1.70.000337
N16T16MaCgaTg347347AY.440.002112
N16T16MaCgaTg240240B.1.20.002113
N16T16MaCgaTg121121AY.40.000188
N16T16MaCgaTg115115B.1.3620.177196
N16T16MaCgaTg101101AY.430.000447
N16T16MaCgaTg9494B.1.617.20.000354
N16T16MaCgaTg7272B.10.000659
N16T16MaCgaTg6969AY.1030.000428
N16T16MaCgaTg5151B.1.10.000925
N16T16MaCgaTg3939B.1.1770.000514
N16T16MaCgaTg3838B.1.4290.000894
N16T16MaCgaTg3636AY.7.10.004057
N16T16MaCgaTg2929AY.470.000902
N16T16MaCgaTg2525AY.250.00015
N16T16MaCgaTg2424AY.30.000239
N16T16MaCgaTg2424B.1.3510.000713
N16T16MaCgaTg2323AY.4.20.000499
N16T16MaCgaTg2121B.1.1.2840.002255
N16T16MaCgaTg2121B.1.5960.00183
N16T16MaCgaTg2020B.1.3110.005491
N16T16MaCgaTg1919B.1.177.360.306452
N16T16MaCgaTg1818B.1.1600.000561
N16T16MaCgaTg1717B.1.177.860.003119
N16T16MaCgaTg1717P.10.000268
N16T16MaCgaTg1616B.1.36.290.008277
N16T16MaCgaTg1414AY.1110.002564
N16T16MaCgaTg1313AY.350.00303
N16T16MaCgaTg1313B.1.177.200.019727
N16T16MaCgaTg1313B.1.4270.000656
N16T16MaCgaTg1212AY.380.005991
N16T16MaCgaTg1111B.1.177.430.016248
N16T16MaCgaTg1111B.1.5250.001245
N16T16MaCgaTg1010AY.60.000411
N16T16MaCgaTg1010B.1.1.2140.000555
N16T16MaCgaTg99AY.1180.000564
N16T16MaCgaTg99AY.390.000222
N16T16MaCgaTg88B.1.360.001167
N16T16MaCgaTg77AY.1000.000322
N16T16MaCgaTg77AY.1020.000186
N16T16MaCgaTg66AY.260.00017
N16T16MaCgaTg66AY.3.10.000512
N16T16MaCgaTg66B.1.177.70.000989
N16T16MaCgaTg66B.1.3690.001711
N16T16MaCgaTg66B.1.5260.000141
N16T16MaCgaTg66B.1.5950.001566
N16T16MaCgaTg55AY.1190.000177
N16T16MaCgaTg55AY.1210.000677
N16T16MaCgaTg55AY.460.00052
N16T16MaCgaTg55AY.50.000103
N16T16MaCgaTg55B.1.2580.000333
N16T16MaCgaTg55P.1.70.001596
N16T16MaCgaTg44AY.200.000155
N16T16MaCgaTg44B.1.1.280.001245
N16T16MaCgaTg44B.1.1.3170.001647
N16T16MaCgaTg44B.1.177.440.002076
N16T16MaCgaTg44B.1.177.560.00267
N16T16MaCgaTg44B.1.4000.001716
N16T16MaCgaTg44B.1.5990.014599
N16T16MaCgaTg44B.1.6000.023392
N16T16MaCgaTg33AY.290.000047
N16T16MaCgaTg33AY.540.000286
N16T16MaCgaTg33AY.980.000237
N16T16MaCgaTg33B.1.1.2280.009146
N16T16MaCgaTg33B.1.1.4290.013825
N16T16MaCgaTg33B.1.1.5190.000119
N16T16MaCgaTg33B.1.160.200.026786
N16T16MaCgaTg33B.1.160.260.007264
N16T16MaCgaTg33B.1.177.600.000655
N16T16MaCgaTg33B.1.177.750.003122
N16T16MaCgaTg33B.1.2210.000213
N16T16MaCgaTg33B.1.5970.013889
N16T16MaCgaTg33B.1.6210.000266
N16T16MaCgaTg33B.1.621.10.001517
N16T16MaCgaTg33P.20.00056
N16T16MaCgaTg22A0.000774
N16T16MaCgaTg22A.23.10.001408
N16T16MaCgaTg22AU.20.004843
N16T16MaCgaTg22AY.10.000791
N16T16MaCgaTg22AY.340.000194
N16T16MaCgaTg22AY.39.10.000079
N16T16MaCgaTg22AY.620.000871
N16T16MaCgaTg22AY.670.000929
N16T16MaCgaTg22AY.740.000231
N16T16MaCgaTg22AY.99.20.000184
N16T16MaCgaTg22B.1.1.1610.007067
N16T16MaCgaTg22B.1.1.1890.003026
N16T16MaCgaTg22B.1.1.270.011299
N16T16MaCgaTg22B.1.1.2940.002532
N16T16MaCgaTg22B.1.1.390.001019
N16T16MaCgaTg22B.1.1.4120.015267
N16T16MaCgaTg22B.1.1.500.001358
N16T16MaCgaTg22B.1.1.630.000772
N16T16MaCgaTg22B.1.177.60.001953
N16T16MaCgaTg22B.1.2430.000139
N16T16MaCgaTg22B.1.30.005236
N16T16MaCgaTg22B.1.4440.031746
N16T16MaCgaTg22B.1.466.20.000782
N16T16MaCgaTg22B.1.517.10.010526
N16T16MaCgaTg22B.1.5800.00813
N16T16MaCgaTg22B.1.619.10.001283
N16T16MaCgaTg22B.230.005848
N16T16MaCgaTg22C.310.035714
N16T16MaCgaTg22P.1.150.000465
N16T16MaCgaTg22Q.80.00033
N16T16MaCgaTg22R.10.00018
N16T16MaCgaTg11A.30.002096
N16T16MaCgaTg11AB.10.008197
N16T16MaCgaTg11AQ.20.111111
N16T16MaCgaTg11AY.1010.00049
N16T16MaCgaTg11AY.1200.000037
N16T16MaCgaTg11AY.16.10.00047
N16T16MaCgaTg11AY.230.00007
N16T16MaCgaTg11AY.270.000065
N16T16MaCgaTg11AY.330.000067
N16T16MaCgaTg11AY.420.00004
N16T16MaCgaTg11AY.450.000122
N16T16MaCgaTg11AY.480.000465
N16T16MaCgaTg11AY.660.00107
N16T16MaCgaTg11AY.70.000196
N16T16MaCgaTg11AY.850.000427
N16T16MaCgaTg11AY.9.10.000084
N16T16MaCgaTg11AY.9.20.000037
N16T16MaCgaTg11AY.930.000273
N16T16MaCgaTg11B.1.1.10.000327
N16T16MaCgaTg11B.1.1.1170.009709
N16T16MaCgaTg11B.1.1.2190.005
N16T16MaCgaTg11B.1.1.2820.011628
N16T16MaCgaTg11B.1.1.2980.000862
N16T16MaCgaTg11B.1.1.3040.002809
N16T16MaCgaTg11B.1.1.330.000421
N16T16MaCgaTg11B.1.1.370.000193
N16T16MaCgaTg11B.1.1.4350.034483
N16T16MaCgaTg11B.1.1.4610.012048
N16T16MaCgaTg11B.1.1.4640.001473
N16T16MaCgaTg11B.1.1.5230.001563
N16T16MaCgaTg11B.1.1.700.000341
N16T16MaCgaTg11B.1.1100.004525
N16T16MaCgaTg11B.1.1200.007692
N16T16MaCgaTg11B.1.1460.004237
N16T16MaCgaTg11B.1.177.110.001698
N16T16MaCgaTg11B.1.177.120.000152
N16T16MaCgaTg11B.1.177.160.000664
N16T16MaCgaTg11B.1.177.320.00135
N16T16MaCgaTg11B.1.177.350.000691
N16T16MaCgaTg11B.1.177.40.000211
N16T16MaCgaTg11B.1.177.450.000381
N16T16MaCgaTg11B.1.177.50.001242
N16T16MaCgaTg11B.1.177.570.000281
N16T16MaCgaTg11B.1.177.620.001192
N16T16MaCgaTg11B.1.177.760.002494
N16T16MaCgaTg11B.1.177.770.000726
N16T16MaCgaTg11B.1.177.810.000189
N16T16MaCgaTg11B.1.177.830.001481
N16T16MaCgaTg11B.1.177.870.000728
N16T16MaCgaTg11B.1.177.90.001332
N16T16MaCgaTg11B.1.1990.004132
N16T16MaCgaTg11B.1.2100.002132
N16T16MaCgaTg11B.1.214.20.0006
N16T16MaCgaTg11B.1.2340.000132
N16T16MaCgaTg11B.1.2400.000216
N16T16MaCgaTg11B.1.258.50.008772
N16T16MaCgaTg11B.1.2650.001271
N16T16MaCgaTg11B.1.36.70.004
N16T16MaCgaTg11B.1.3610.001289
N16T16MaCgaTg11B.1.4160.001269
N16T16MaCgaTg11B.1.4230.010204
N16T16MaCgaTg11B.1.438.10.000107
N16T16MaCgaTg11B.1.4430.004673
N16T16MaCgaTg11B.1.5030.002488
N16T16MaCgaTg11B.1.5040.03125
N16T16MaCgaTg11B.1.5610.000397
N16T16MaCgaTg11B.1.5640.000426
N16T16MaCgaTg11B.1.575.10.002439
N16T16MaCgaTg11B.1.6230.000536
N16T16MaCgaTg11B.1.6270.00202
N16T16MaCgaTg11B.1.88.10.004808
N16T16MaCgaTg11B.400.000364
N16T16MaCgaTg11B.6.60.000889
N16T16MaCgaTg11C.370.000116
N16T16MaCgaTg11D.20.000075
N16T16MaCgaTg11P.1.120.000484
N16T16MaCgaTg11P.1.140.000048
N16T16MaCgaTg11P.1.170.000162
N16T16MaCgaTg11Q.10.000126
N16T16MaCgaTg11Q.30.000145

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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