CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 16 | T16T | syn | acG | acT | 6743 | 4669 | 0.692422 | 28319-28321 | |
N | 16 | T16T | syn | acG | acA | 6743 | 2063 | 0.305947 | 28319-28321 | |
N | 16 | T16T | syn | acG | acC | 6743 | 11 | 0.00163132 | 28319-28321 | |
N | 16 | T16M | nonsyn | aCg | aTg | 2406 | 2406 | 1 | 28319-28321 | |
N | 16 | T16A | nonsyn | Acg | Gcg | 969 | 968 | 0.998968 | 28319-28321 | |
N | 16 | T16A | nonsyn | AcG | GcT | 969 | 1 | 0.00103199 | 28319-28321 | |
N | 16 | T16del | del | ACG | --- | 48 | 48 | 1 | 28319-28321 | |
N | 16 | T16K | nonsyn | aCg | aAg | 31 | 31 | 1 | 28319-28321 | |
N | 16 | T16S | nonsyn | Acg | Tcg | 30 | 30 | 1 | 28319-28321 | |
N | 16 | T16P | nonsyn | Acg | Ccg | 6 | 6 | 1 | 28319-28321 | |
N | 16 | T16L | nonsyn | ACg | CTg | 3 | 2 | 0.666667 | 28319-28321 | |
N | 16 | T16L | nonsyn | ACg | TTg | 3 | 1 | 0.333333 | 28319-28321 | |
N | 16 | T16I | nonsyn | aCG | aTA | 2 | 1 | 0.5 | 28319-28321 | |
N | 16 | T16I | nonsyn | aCG | aTT | 2 | 1 | 0.5 | 28319-28321 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 16 | T16T | acG | acT | 4669 | 6743 | All | 0.000893 |
N | 16 | T16T | acG | acA | 2063 | 6743 | All | 0.000395 |
N | 16 | T16T | acG | acC | 11 | 6743 | All | 0.000002 |
N | 16 | T16M | aCg | aTg | 2406 | 2406 | All | 0.00046 |
N | 16 | T16T | acG | acA | 1132 | 1132 | B.1.177.10 | 0.993854 |
N | 16 | T16T | acG | acT | 1063 | 1130 | B.1.1.7 | 0.000952 |
N | 16 | T16T | acG | acA | 63 | 1130 | B.1.1.7 | 0.000056 |
N | 16 | T16T | acG | acC | 4 | 1130 | B.1.1.7 | 0.000004 |
N | 16 | T16A | Acg | Gcg | 968 | 969 | All | 0.000185 |
N | 16 | T16A | AcG | GcT | 1 | 969 | All | 0 |
N | 16 | T16T | acG | acT | 863 | 893 | AY.4 | 0.001343 |
N | 16 | T16T | acG | acA | 29 | 893 | AY.4 | 0.000045 |
N | 16 | T16T | acG | acC | 1 | 893 | AY.4 | 0.000002 |
N | 16 | T16A | Acg | Gcg | 846 | 846 | AY.26 | 0.02395 |
N | 16 | T16M | aCg | aTg | 377 | 377 | B.1.1.7 | 0.000337 |
N | 16 | T16M | aCg | aTg | 347 | 347 | AY.44 | 0.002112 |
N | 16 | T16T | acG | acT | 306 | 306 | B.1.234 | 0.040375 |
N | 16 | T16M | aCg | aTg | 240 | 240 | B.1.2 | 0.002113 |
N | 16 | T16T | acG | acT | 103 | 176 | B.1.2 | 0.000907 |
N | 16 | T16T | acG | acA | 72 | 176 | B.1.2 | 0.000634 |
N | 16 | T16T | acG | acC | 1 | 176 | B.1.2 | 0.000009 |
N | 16 | T16T | acG | acT | 121 | 175 | B.1 | 0.001108 |
N | 16 | T16T | acG | acA | 54 | 175 | B.1 | 0.000495 |
N | 16 | T16T | acG | acT | 138 | 146 | B.1.617.2 | 0.00052 |
N | 16 | T16T | acG | acA | 8 | 146 | B.1.617.2 | 0.00003 |
N | 16 | T16T | acG | acT | 141 | 141 | B.1.177.12 | 0.02139 |
N | 16 | T16M | aCg | aTg | 121 | 121 | AY.4 | 0.000188 |
N | 16 | T16T | acG | acT | 82 | 119 | B.1.177 | 0.00108 |
N | 16 | T16T | acG | acA | 37 | 119 | B.1.177 | 0.000487 |
N | 16 | T16T | acG | acA | 71 | 115 | B.1.1 | 0.001288 |
N | 16 | T16T | acG | acT | 44 | 115 | B.1.1 | 0.000798 |
N | 16 | T16M | aCg | aTg | 115 | 115 | B.1.362 | 0.177196 |
N | 16 | T16T | acG | acT | 113 | 114 | AY.74 | 0.013068 |
N | 16 | T16T | acG | acA | 1 | 114 | AY.74 | 0.000116 |
N | 16 | T16T | acG | acA | 79 | 105 | B.1.429 | 0.001859 |
N | 16 | T16T | acG | acT | 25 | 105 | B.1.429 | 0.000588 |
N | 16 | T16T | acG | acC | 1 | 105 | B.1.429 | 0.000024 |
N | 16 | T16M | aCg | aTg | 101 | 101 | AY.43 | 0.000447 |
N | 16 | T16T | acG | acT | 94 | 95 | B.1.1.50 | 0.063815 |
N | 16 | T16T | acG | acA | 1 | 95 | B.1.1.50 | 0.000679 |
N | 16 | T16T | acG | acT | 94 | 94 | AY.42 | 0.003782 |
N | 16 | T16M | aCg | aTg | 94 | 94 | B.1.617.2 | 0.000354 |
N | 16 | T16T | acG | acT | 77 | 87 | AY.103 | 0.000478 |
N | 16 | T16T | acG | acA | 10 | 87 | AY.103 | 0.000062 |
N | 16 | T16T | acG | acT | 82 | 82 | B.1.1.266 | 1 |
N | 16 | T16T | acG | acT | 67 | 77 | AY.43 | 0.000297 |
N | 16 | T16T | acG | acA | 8 | 77 | AY.43 | 0.000035 |
N | 16 | T16T | acG | acC | 2 | 77 | AY.43 | 0.000009 |
N | 16 | T16M | aCg | aTg | 72 | 72 | B.1 | 0.000659 |
N | 16 | T16M | aCg | aTg | 69 | 69 | AY.103 | 0.000428 |
N | 16 | T16T | acG | acT | 58 | 67 | AY.3 | 0.000577 |
N | 16 | T16T | acG | acA | 9 | 67 | AY.3 | 0.00009 |
N | 16 | T16T | acG | acT | 65 | 65 | U.2 | 0.570175 |
N | 16 | T16T | acG | acT | 53 | 64 | P.1 | 0.000835 |
N | 16 | T16T | acG | acA | 10 | 64 | P.1 | 0.000158 |
N | 16 | T16T | acG | acC | 1 | 64 | P.1 | 0.000016 |
N | 16 | T16T | acG | acT | 60 | 60 | AY.4.5 | 0.00645 |
N | 16 | T16T | acG | acT | 51 | 60 | B.1.160 | 0.001591 |
N | 16 | T16T | acG | acA | 9 | 60 | B.1.160 | 0.000281 |
N | 16 | T16T | acG | acT | 59 | 59 | AY.54 | 0.005625 |
N | 16 | T16A | Acg | Gcg | 58 | 58 | B.1.1.7 | 0.000052 |
N | 16 | T16T | acG | acT | 40 | 52 | AY.25 | 0.000241 |
N | 16 | T16T | acG | acA | 12 | 52 | AY.25 | 0.000072 |
N | 16 | T16T | acG | acA | 40 | 52 | B.1.1.519 | 0.001588 |
N | 16 | T16T | acG | acT | 12 | 52 | B.1.1.519 | 0.000477 |
N | 16 | T16T | acG | acT | 46 | 51 | AY.44 | 0.00028 |
N | 16 | T16T | acG | acA | 5 | 51 | AY.44 | 0.00003 |
N | 16 | T16M | aCg | aTg | 51 | 51 | B.1.1 | 0.000925 |
N | 16 | T16T | acG | acT | 49 | 49 | B.1.177.81 | 0.009277 |
N | 16 | T16del | ACG | --- | 48 | 48 | All | 0.000009 |
N | 16 | T16T | acG | acA | 34 | 39 | B.1.1.1 | 0.011107 |
N | 16 | T16T | acG | acT | 5 | 39 | B.1.1.1 | 0.001633 |
N | 16 | T16M | aCg | aTg | 39 | 39 | B.1.177 | 0.000514 |
N | 16 | T16M | aCg | aTg | 38 | 38 | B.1.429 | 0.000894 |
N | 16 | T16M | aCg | aTg | 36 | 36 | AY.7.1 | 0.004057 |
N | 16 | T16T | acG | acT | 30 | 32 | AY.46.6 | 0.002166 |
N | 16 | T16T | acG | acA | 2 | 32 | AY.46.6 | 0.000144 |
N | 16 | T16K | aCg | aAg | 31 | 31 | All | 0.000006 |
N | 16 | T16T | acG | acT | 31 | 31 | AY.102 | 0.000822 |
N | 16 | T16T | acG | acA | 27 | 31 | B.1.1.63 | 0.010417 |
N | 16 | T16T | acG | acT | 4 | 31 | B.1.1.63 | 0.001543 |
N | 16 | T16S | Acg | Tcg | 30 | 30 | All | 0.000006 |
N | 16 | T16M | aCg | aTg | 29 | 29 | AY.47 | 0.000902 |
N | 16 | T16T | acG | acA | 29 | 29 | B.1.1.434 | 0.010108 |
N | 16 | T16T | acG | acA | 28 | 29 | B.1.466.2 | 0.010955 |
N | 16 | T16T | acG | acT | 1 | 29 | B.1.466.2 | 0.000391 |
N | 16 | T16T | acG | acT | 28 | 28 | AY.45 | 0.003407 |
N | 16 | T16T | acG | acT | 22 | 27 | B.1.351 | 0.000654 |
N | 16 | T16T | acG | acA | 5 | 27 | B.1.351 | 0.000149 |
N | 16 | T16M | aCg | aTg | 25 | 25 | AY.25 | 0.00015 |
N | 16 | T16T | acG | acT | 25 | 25 | B.1.1.47 | 0.13369 |
N | 16 | T16T | acG | acT | 25 | 25 | B.1.177.60 | 0.005461 |
N | 16 | T16M | aCg | aTg | 24 | 24 | AY.3 | 0.000239 |
N | 16 | T16T | acG | acA | 24 | 24 | B.1.1.70 | 0.008186 |
N | 16 | T16T | acG | acT | 23 | 24 | B.1.243 | 0.0016 |
N | 16 | T16T | acG | acA | 1 | 24 | B.1.243 | 0.00007 |
N | 16 | T16M | aCg | aTg | 24 | 24 | B.1.351 | 0.000713 |
N | 16 | T16M | aCg | aTg | 23 | 23 | AY.4.2 | 0.000499 |
N | 16 | T16T | acG | acT | 20 | 21 | AY.39 | 0.000494 |
N | 16 | T16T | acG | acC | 1 | 21 | AY.39 | 0.000025 |
N | 16 | T16T | acG | acT | 21 | 21 | AY.98.1 | 0.001017 |
N | 16 | T16T | acG | acA | 14 | 21 | B.1.1.216 | 0.012467 |
N | 16 | T16T | acG | acT | 7 | 21 | B.1.1.216 | 0.006233 |
N | 16 | T16M | aCg | aTg | 21 | 21 | B.1.1.284 | 0.002255 |
N | 16 | T16M | aCg | aTg | 21 | 21 | B.1.596 | 0.00183 |
N | 16 | T16T | acG | acA | 13 | 20 | B.1.258 | 0.000865 |
N | 16 | T16T | acG | acT | 7 | 20 | B.1.258 | 0.000466 |
N | 16 | T16M | aCg | aTg | 20 | 20 | B.1.311 | 0.005491 |
N | 16 | T16T | acG | acT | 19 | 20 | B.1.526 | 0.000447 |
N | 16 | T16T | acG | acA | 1 | 20 | B.1.526 | 0.000024 |
N | 16 | T16T | acG | acA | 17 | 19 | B.1.1.305 | 0.065637 |
N | 16 | T16T | acG | acT | 2 | 19 | B.1.1.305 | 0.007722 |
N | 16 | T16M | aCg | aTg | 19 | 19 | B.1.177.36 | 0.306452 |
N | 16 | T16T | acG | acT | 18 | 18 | AY.119 | 0.000636 |
N | 16 | T16M | aCg | aTg | 18 | 18 | B.1.160 | 0.000561 |
N | 16 | T16M | aCg | aTg | 17 | 17 | B.1.177.86 | 0.003119 |
N | 16 | T16M | aCg | aTg | 17 | 17 | P.1 | 0.000268 |
N | 16 | T16T | acG | acT | 13 | 16 | AY.121 | 0.001759 |
N | 16 | T16T | acG | acA | 3 | 16 | AY.121 | 0.000406 |
N | 16 | T16M | aCg | aTg | 16 | 16 | B.1.36.29 | 0.008277 |
N | 16 | T16T | acG | acT | 15 | 15 | B.1.499 | 0.015756 |
N | 16 | T16M | aCg | aTg | 14 | 14 | AY.111 | 0.002564 |
N | 16 | T16T | acG | acT | 10 | 14 | AY.4.2 | 0.000217 |
N | 16 | T16T | acG | acA | 4 | 14 | AY.4.2 | 0.000087 |
N | 16 | T16T | acG | acA | 11 | 14 | AY.98 | 0.000869 |
N | 16 | T16T | acG | acT | 3 | 14 | AY.98 | 0.000237 |
N | 16 | T16T | acG | acT | 13 | 13 | AY.3.1 | 0.001108 |
N | 16 | T16M | aCg | aTg | 13 | 13 | AY.35 | 0.00303 |
N | 16 | T16S | Acg | Tcg | 13 | 13 | B.1.1.7 | 0.000012 |
N | 16 | T16M | aCg | aTg | 13 | 13 | B.1.177.20 | 0.019727 |
N | 16 | T16T | acG | acT | 13 | 13 | B.1.36.17 | 0.006423 |
N | 16 | T16M | aCg | aTg | 13 | 13 | B.1.427 | 0.000656 |
N | 16 | T16T | acG | acA | 10 | 13 | P.1.14 | 0.000478 |
N | 16 | T16T | acG | acT | 3 | 13 | P.1.14 | 0.000143 |
N | 16 | T16T | acG | acT | 12 | 12 | AY.120 | 0.000446 |
N | 16 | T16M | aCg | aTg | 12 | 12 | AY.38 | 0.005991 |
N | 16 | T16T | acG | acT | 9 | 11 | AY.6 | 0.00037 |
N | 16 | T16T | acG | acA | 2 | 11 | AY.6 | 0.000082 |
N | 16 | T16M | aCg | aTg | 11 | 11 | B.1.177.43 | 0.016248 |
N | 16 | T16M | aCg | aTg | 11 | 11 | B.1.525 | 0.001245 |
N | 16 | T16T | acG | acA | 11 | 11 | B.1.527 | 0.040741 |
N | 16 | T16T | acG | acT | 11 | 11 | B.1.617.1 | 0.001419 |
N | 16 | T16M | aCg | aTg | 10 | 10 | AY.6 | 0.000411 |
N | 16 | T16M | aCg | aTg | 10 | 10 | B.1.1.214 | 0.000555 |
N | 16 | T16T | acG | acT | 10 | 10 | B.1.517 | 0.00427 |
N | 16 | T16T | acG | acT | 10 | 10 | B.1.523 | 0.02451 |
N | 16 | T16M | aCg | aTg | 9 | 9 | AY.118 | 0.000564 |
N | 16 | T16T | acG | acT | 8 | 9 | AY.118 | 0.000501 |
N | 16 | T16T | acG | acA | 1 | 9 | AY.118 | 0.000063 |
N | 16 | T16T | acG | acT | 8 | 9 | AY.29 | 0.000126 |
N | 16 | T16T | acG | acA | 1 | 9 | AY.29 | 0.000016 |
N | 16 | T16M | aCg | aTg | 9 | 9 | AY.39 | 0.000222 |
N | 16 | T16T | acG | acT | 8 | 9 | AY.75 | 0.000448 |
N | 16 | T16T | acG | acA | 1 | 9 | AY.75 | 0.000056 |
N | 16 | T16del | ACG | --- | 9 | 9 | AY.99.2 | 0.000829 |
N | 16 | T16T | acG | acA | 9 | 9 | B.1.177.72 | 0.030508 |
N | 16 | T16T | acG | acT | 8 | 9 | B.1.396 | 0.005646 |
N | 16 | T16T | acG | acA | 1 | 9 | B.1.396 | 0.000706 |
N | 16 | T16A | Acg | Gcg | 8 | 8 | AY.3 | 0.00008 |
N | 16 | T16T | acG | acT | 5 | 8 | AY.9.2 | 0.000184 |
N | 16 | T16T | acG | acA | 3 | 8 | AY.9.2 | 0.00011 |
N | 16 | T16S | Acg | Tcg | 8 | 8 | B.1.1.214 | 0.000444 |
N | 16 | T16T | acG | acA | 8 | 8 | B.1.1.354 | 0.035088 |
N | 16 | T16M | aCg | aTg | 8 | 8 | B.1.36 | 0.001167 |
N | 16 | T16T | acG | acT | 5 | 8 | B.1.36 | 0.00073 |
N | 16 | T16T | acG | acA | 3 | 8 | B.1.36 | 0.000438 |
N | 16 | T16M | aCg | aTg | 7 | 7 | AY.100 | 0.000322 |
N | 16 | T16M | aCg | aTg | 7 | 7 | AY.102 | 0.000186 |
N | 16 | T16T | acG | acT | 7 | 7 | AY.26 | 0.000198 |
N | 16 | T16T | acG | acT | 7 | 7 | AY.36 | 0.001037 |
N | 16 | T16T | acG | acT | 7 | 7 | AY.41 | 0.002058 |
N | 16 | T16T | acG | acT | 6 | 7 | AY.48 | 0.002791 |
N | 16 | T16T | acG | acA | 1 | 7 | AY.48 | 0.000465 |
N | 16 | T16T | acG | acT | 6 | 7 | AY.61 | 0.000629 |
N | 16 | T16T | acG | acA | 1 | 7 | AY.61 | 0.000105 |
N | 16 | T16K | aCg | aAg | 7 | 7 | B.1.2 | 0.000062 |
N | 16 | T16P | Acg | Ccg | 6 | 6 | All | 0.000001 |
N | 16 | T16T | acG | acT | 5 | 6 | AY.20 | 0.000194 |
N | 16 | T16T | acG | acA | 1 | 6 | AY.20 | 0.000039 |
N | 16 | T16M | aCg | aTg | 6 | 6 | AY.26 | 0.00017 |
N | 16 | T16M | aCg | aTg | 6 | 6 | AY.3.1 | 0.000512 |
N | 16 | T16A | Acg | Gcg | 6 | 6 | AY.46.6 | 0.000433 |
N | 16 | T16T | acG | acT | 6 | 6 | AY.5 | 0.000124 |
N | 16 | T16T | acG | acA | 6 | 6 | B.1.1.265 | 0.018927 |
N | 16 | T16T | acG | acA | 6 | 6 | B.1.1.291 | 0.004454 |
N | 16 | T16M | aCg | aTg | 6 | 6 | B.1.177.7 | 0.000989 |
N | 16 | T16T | acG | acA | 6 | 6 | B.1.36.26 | 0.017143 |
N | 16 | T16M | aCg | aTg | 6 | 6 | B.1.369 | 0.001711 |
N | 16 | T16T | acG | acT | 6 | 6 | B.1.499.1 | 0.666667 |
N | 16 | T16M | aCg | aTg | 6 | 6 | B.1.526 | 0.000141 |
N | 16 | T16M | aCg | aTg | 6 | 6 | B.1.595 | 0.001566 |
N | 16 | T16T | acG | acT | 4 | 6 | P.1.15 | 0.000929 |
N | 16 | T16T | acG | acA | 2 | 6 | P.1.15 | 0.000465 |
N | 16 | T16T | acG | acT | 5 | 5 | AY.100 | 0.00023 |
N | 16 | T16M | aCg | aTg | 5 | 5 | AY.119 | 0.000177 |
N | 16 | T16M | aCg | aTg | 5 | 5 | AY.121 | 0.000677 |
N | 16 | T16K | aCg | aAg | 5 | 5 | AY.4 | 0.000008 |
N | 16 | T16T | acG | acT | 5 | 5 | AY.4.2.1 | 0.000745 |
N | 16 | T16A | Acg | Gcg | 5 | 5 | AY.43 | 0.000022 |
N | 16 | T16del | ACG | --- | 5 | 5 | AY.43 | 0.000022 |
N | 16 | T16M | aCg | aTg | 5 | 5 | AY.46 | 0.00052 |
N | 16 | T16M | aCg | aTg | 5 | 5 | AY.5 | 0.000103 |
N | 16 | T16T | acG | acA | 4 | 5 | B.1.1.25 | 0.002274 |
N | 16 | T16T | acG | acT | 1 | 5 | B.1.1.25 | 0.000569 |
N | 16 | T16A | Acg | Gcg | 5 | 5 | B.1.2 | 0.000044 |
N | 16 | T16A | Acg | Gcg | 5 | 5 | B.1.243 | 0.000348 |
N | 16 | T16M | aCg | aTg | 5 | 5 | B.1.258 | 0.000333 |
N | 16 | T16T | acG | acT | 5 | 5 | B.1.258.14 | 0.004902 |
N | 16 | T16T | acG | acT | 3 | 5 | B.1.525 | 0.000339 |
N | 16 | T16T | acG | acA | 2 | 5 | B.1.525 | 0.000226 |
N | 16 | T16T | acG | acT | 5 | 5 | B.1.619.1 | 0.003207 |
N | 16 | T16T | acG | acT | 3 | 5 | B.1.621 | 0.000266 |
N | 16 | T16T | acG | acA | 2 | 5 | B.1.621 | 0.000177 |
N | 16 | T16M | aCg | aTg | 5 | 5 | P.1.7 | 0.001596 |
N | 16 | T16T | acG | acT | 5 | 5 | P.2 | 0.000933 |
N | 16 | T16T | acG | acT | 4 | 4 | A.2 | 0.002647 |
N | 16 | T16T | acG | acA | 4 | 4 | AY.114 | 0.000924 |
N | 16 | T16T | acG | acT | 4 | 4 | AY.120.1 | 0.001284 |
N | 16 | T16T | acG | acT | 4 | 4 | AY.2 | 0.001425 |
N | 16 | T16M | aCg | aTg | 4 | 4 | AY.20 | 0.000155 |
N | 16 | T16T | acG | acT | 3 | 4 | AY.46 | 0.000312 |
N | 16 | T16T | acG | acA | 1 | 4 | AY.46 | 0.000104 |
N | 16 | T16T | acG | acT | 3 | 4 | AY.47 | 0.000093 |
N | 16 | T16T | acG | acA | 1 | 4 | AY.47 | 0.000031 |
N | 16 | T16T | acG | acA | 3 | 4 | AY.77 | 0.003382 |
N | 16 | T16T | acG | acT | 1 | 4 | AY.77 | 0.001127 |
N | 16 | T16A | Acg | Gcg | 4 | 4 | AY.98.1 | 0.000194 |
N | 16 | T16M | aCg | aTg | 4 | 4 | B.1.1.28 | 0.001245 |
N | 16 | T16T | acG | acA | 4 | 4 | B.1.1.28 | 0.001245 |
N | 16 | T16M | aCg | aTg | 4 | 4 | B.1.1.317 | 0.001647 |
N | 16 | T16T | acG | acT | 3 | 4 | B.1.1.448 | 0.006098 |
N | 16 | T16T | acG | acA | 1 | 4 | B.1.1.448 | 0.002033 |
N | 16 | T16T | acG | acA | 4 | 4 | B.1.1.526 | 0.014184 |
N | 16 | T16del | ACG | --- | 4 | 4 | B.1.1.7 | 0.000004 |
N | 16 | T16T | acG | acA | 4 | 4 | B.1.111 | 0.0047 |
N | 16 | T16M | aCg | aTg | 4 | 4 | B.1.177.44 | 0.002076 |
N | 16 | T16M | aCg | aTg | 4 | 4 | B.1.177.56 | 0.00267 |
N | 16 | T16T | acG | acT | 4 | 4 | B.1.177.75 | 0.004162 |
N | 16 | T16T | acG | acT | 3 | 4 | B.1.36.29 | 0.001552 |
N | 16 | T16T | acG | acA | 1 | 4 | B.1.36.29 | 0.000517 |
N | 16 | T16T | acG | acA | 4 | 4 | B.1.36.9 | 0.012862 |
N | 16 | T16M | aCg | aTg | 4 | 4 | B.1.400 | 0.001716 |
N | 16 | T16T | acG | acA | 2 | 4 | B.1.582 | 0.000981 |
N | 16 | T16T | acG | acT | 2 | 4 | B.1.582 | 0.000981 |
N | 16 | T16T | acG | acT | 4 | 4 | B.1.596 | 0.000349 |
N | 16 | T16M | aCg | aTg | 4 | 4 | B.1.599 | 0.014599 |
N | 16 | T16M | aCg | aTg | 4 | 4 | B.1.600 | 0.023392 |
N | 16 | T16A | Acg | Gcg | 4 | 4 | B.1.617.2 | 0.000015 |
N | 16 | T16T | acG | acT | 4 | 4 | C.37 | 0.000464 |
N | 16 | T16T | acG | acT | 4 | 4 | Q.8 | 0.00066 |
N | 16 | T16T | acG | acA | 2 | 3 | A.23.1 | 0.001408 |
N | 16 | T16T | acG | acT | 1 | 3 | A.23.1 | 0.000704 |
N | 16 | T16L | ACg | CTg | 2 | 3 | All | 0 |
N | 16 | T16L | ACg | TTg | 1 | 3 | All | 0 |
N | 16 | T16T | acG | acA | 2 | 3 | AY.111 | 0.000366 |
N | 16 | T16T | acG | acT | 1 | 3 | AY.111 | 0.000183 |
N | 16 | T16A | Acg | Gcg | 3 | 3 | AY.113 | 0.000427 |
N | 16 | T16T | acG | acT | 3 | 3 | AY.117 | 0.000254 |
N | 16 | T16M | aCg | aTg | 3 | 3 | AY.29 | 0.000047 |
N | 16 | T16T | acG | acA | 3 | 3 | AY.29.1 | 0.000662 |
N | 16 | T16T | acG | acT | 2 | 3 | AY.34 | 0.000194 |
N | 16 | T16T | acG | acA | 1 | 3 | AY.34 | 0.000097 |
N | 16 | T16A | Acg | Gcg | 2 | 3 | AY.4 | 0.000003 |
N | 16 | T16A | AcG | GcT | 1 | 3 | AY.4 | 0.000002 |
N | 16 | T16T | acG | acT | 3 | 3 | AY.46.3 | 0.002801 |
N | 16 | T16T | acG | acT | 3 | 3 | AY.46.4 | 0.000494 |
N | 16 | T16M | aCg | aTg | 3 | 3 | AY.54 | 0.000286 |
N | 16 | T16T | acG | acA | 3 | 3 | AY.7.2 | 0.001678 |
N | 16 | T16M | aCg | aTg | 3 | 3 | AY.98 | 0.000237 |
N | 16 | T16K | aCg | aAg | 3 | 3 | B.1 | 0.000027 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.1.228 | 0.009146 |
N | 16 | T16T | acG | acA | 2 | 3 | B.1.1.277 | 0.001517 |
N | 16 | T16T | acG | acT | 1 | 3 | B.1.1.277 | 0.000759 |
N | 16 | T16T | acG | acT | 2 | 3 | B.1.1.317 | 0.000823 |
N | 16 | T16T | acG | acA | 1 | 3 | B.1.1.317 | 0.000412 |
N | 16 | T16del | ACG | --- | 3 | 3 | B.1.1.368 | 0.009259 |
N | 16 | T16T | acG | acA | 3 | 3 | B.1.1.368 | 0.009259 |
N | 16 | T16T | acG | acT | 3 | 3 | B.1.1.397 | 0.006757 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.1.429 | 0.013825 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.1.519 | 0.000119 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.160.20 | 0.026786 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.160.26 | 0.007264 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.177.60 | 0.000655 |
N | 16 | T16T | acG | acA | 2 | 3 | B.1.177.73 | 0.001133 |
N | 16 | T16T | acG | acT | 1 | 3 | B.1.177.73 | 0.000566 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.177.75 | 0.003122 |
N | 16 | T16T | acG | acA | 2 | 3 | B.1.177.8 | 0.001505 |
N | 16 | T16T | acG | acT | 1 | 3 | B.1.177.8 | 0.000752 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.221 | 0.000213 |
N | 16 | T16T | acG | acT | 3 | 3 | B.1.239 | 0.003663 |
N | 16 | T16T | acG | acT | 2 | 3 | B.1.36.18 | 0.00084 |
N | 16 | T16T | acG | acA | 1 | 3 | B.1.36.18 | 0.00042 |
N | 16 | T16T | acG | acT | 3 | 3 | B.1.427 | 0.000151 |
N | 16 | T16T | acG | acT | 3 | 3 | B.1.470 | 0.004213 |
N | 16 | T16T | acG | acT | 3 | 3 | B.1.575 | 0.00091 |
N | 16 | T16T | acG | acT | 2 | 3 | B.1.595 | 0.000522 |
N | 16 | T16T | acG | acA | 1 | 3 | B.1.595 | 0.000261 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.597 | 0.013889 |
N | 16 | T16del | ACG | --- | 3 | 3 | B.1.617.2 | 0.000011 |
N | 16 | T16K | aCg | aAg | 3 | 3 | B.1.617.2 | 0.000011 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.621 | 0.000266 |
N | 16 | T16M | aCg | aTg | 3 | 3 | B.1.621.1 | 0.001517 |
N | 16 | T16T | acG | acA | 3 | 3 | B.40 | 0.001093 |
N | 16 | T16T | acG | acT | 3 | 3 | C.18 | 0.007772 |
N | 16 | T16T | acG | acT | 3 | 3 | C.31 | 0.053571 |
N | 16 | T16T | acG | acA | 2 | 3 | C.36 | 0.001821 |
N | 16 | T16T | acG | acT | 1 | 3 | C.36 | 0.000911 |
N | 16 | T16K | aCg | aAg | 3 | 3 | P.1.16 | 0.001122 |
N | 16 | T16M | aCg | aTg | 3 | 3 | P.2 | 0.00056 |
N | 16 | T16M | aCg | aTg | 2 | 2 | A | 0.000774 |
N | 16 | T16M | aCg | aTg | 2 | 2 | A.23.1 | 0.001408 |
N | 16 | T16A | Acg | Gcg | 2 | 2 | A.27 | 0.003311 |
N | 16 | T16I | aCG | aTT | 1 | 2 | All | 0 |
N | 16 | T16I | aCG | aTA | 1 | 2 | All | 0 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AU.2 | 0.004843 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AY.1 | 0.000791 |
N | 16 | T16K | aCg | aAg | 2 | 2 | AY.101 | 0.000981 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.110 | 0.000225 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.113 | 0.000285 |
N | 16 | T16del | ACG | --- | 2 | 2 | AY.121 | 0.000271 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.16.1 | 0.00094 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.23 | 0.000139 |
N | 16 | T16del | ACG | --- | 2 | 2 | AY.25 | 0.000012 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.27 | 0.000129 |
N | 16 | T16S | Acg | Tcg | 2 | 2 | AY.3 | 0.00002 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.33 | 0.000134 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AY.34 | 0.000194 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.35 | 0.000466 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.37 | 0.000632 |
N | 16 | T16A | Acg | Gcg | 2 | 2 | AY.39 | 0.000049 |
N | 16 | T16K | aCg | aAg | 2 | 2 | AY.39 | 0.000049 |
N | 16 | T16T | acG | acA | 2 | 2 | AY.39.1 | 0.000079 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AY.39.1 | 0.000079 |
N | 16 | T16P | Acg | Ccg | 2 | 2 | AY.4 | 0.000003 |
N | 16 | T16del | ACG | --- | 2 | 2 | AY.46 | 0.000208 |
N | 16 | T16A | Acg | Gcg | 2 | 2 | AY.47 | 0.000062 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AY.62 | 0.000871 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AY.67 | 0.000929 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.68 | 0.000547 |
N | 16 | T16T | acG | acT | 1 | 2 | AY.69 | 0.000187 |
N | 16 | T16T | acG | acA | 1 | 2 | AY.69 | 0.000187 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AY.74 | 0.000231 |
N | 16 | T16T | acG | acT | 1 | 2 | AY.75.1 | 0.00018 |
N | 16 | T16T | acG | acA | 1 | 2 | AY.75.1 | 0.00018 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.84 | 0.000875 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.9.1 | 0.000167 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.93 | 0.000546 |
N | 16 | T16M | aCg | aTg | 2 | 2 | AY.99.2 | 0.000184 |
N | 16 | T16T | acG | acT | 2 | 2 | AY.99.2 | 0.000184 |
N | 16 | T16A | Acg | Gcg | 2 | 2 | B.1.1 | 0.000036 |
N | 16 | T16P | Acg | Ccg | 2 | 2 | B.1.1 | 0.000036 |
N | 16 | T16del | ACG | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.1.129 | 0.018349 |
N | 16 | T16T | acG | acA | 1 | 2 | B.1.1.141 | 0.002012 |
N | 16 | T16T | acG | acT | 1 | 2 | B.1.1.141 | 0.002012 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.1.159 | 0.009346 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.161 | 0.007067 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.189 | 0.003026 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.1.198 | 0.002937 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.1.207 | 0.002364 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.1.267 | 0.020202 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.27 | 0.011299 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.294 | 0.002532 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.1.297 | 0.004474 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.1.378 | 0.014599 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.39 | 0.001019 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.412 | 0.015267 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.1.432 | 0.002532 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.50 | 0.001358 |
N | 16 | T16A | Acg | Gcg | 2 | 2 | B.1.1.519 | 0.000079 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.1.63 | 0.000772 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.160.16 | 0.001859 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.177.4 | 0.000422 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.177.6 | 0.001953 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.177.7 | 0.00033 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.192 | 0.018519 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.201 | 0.011364 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.22 | 0.002635 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.243 | 0.000139 |
N | 16 | T16T | acG | acT | 1 | 2 | B.1.258.17 | 0.000104 |
N | 16 | T16T | acG | acA | 1 | 2 | B.1.258.17 | 0.000104 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.3 | 0.005236 |
N | 16 | T16K | aCg | aAg | 2 | 2 | B.1.351 | 0.000059 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.36.10 | 0.009569 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.36.22 | 0.002415 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.36.7 | 0.008 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.367 | 0.001585 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.369 | 0.00057 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.444 | 0.031746 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.466.1 | 0.014388 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.466.2 | 0.000782 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.517.1 | 0.010526 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.524 | 0.002813 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.561 | 0.000794 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.564 | 0.000852 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.580 | 0.00813 |
N | 16 | T16T | acG | acA | 2 | 2 | B.1.609 | 0.000959 |
N | 16 | T16S | Acg | Tcg | 2 | 2 | B.1.617.2 | 0.000008 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.1.619.1 | 0.001283 |
N | 16 | T16T | acG | acT | 2 | 2 | B.1.88.1 | 0.009615 |
N | 16 | T16M | aCg | aTg | 2 | 2 | B.23 | 0.005848 |
N | 16 | T16T | acG | acA | 2 | 2 | C.16 | 0.002121 |
N | 16 | T16T | acG | acA | 2 | 2 | C.23 | 0.011628 |
N | 16 | T16M | aCg | aTg | 2 | 2 | C.31 | 0.035714 |
N | 16 | T16T | acG | acT | 2 | 2 | K.2 | 0.08 |
N | 16 | T16M | aCg | aTg | 2 | 2 | P.1.15 | 0.000465 |
N | 16 | T16T | acG | acA | 1 | 2 | P.1.17 | 0.000162 |
N | 16 | T16T | acG | acT | 1 | 2 | P.1.17 | 0.000162 |
N | 16 | T16T | acG | acT | 2 | 2 | P.1.2 | 0.002312 |
N | 16 | T16T | acG | acT | 1 | 2 | Q.3 | 0.000145 |
N | 16 | T16T | acG | acA | 1 | 2 | Q.3 | 0.000145 |
N | 16 | T16M | aCg | aTg | 2 | 2 | Q.8 | 0.00033 |
N | 16 | T16M | aCg | aTg | 2 | 2 | R.1 | 0.00018 |
N | 16 | T16T | acG | acA | 1 | 1 | A.19 | 0.009434 |
N | 16 | T16T | acG | acT | 1 | 1 | A.2.5 | 0.000499 |
N | 16 | T16T | acG | acT | 1 | 1 | A.27 | 0.001656 |
N | 16 | T16M | aCg | aTg | 1 | 1 | A.3 | 0.002096 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AB.1 | 0.008197 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AQ.2 | 0.111111 |
N | 16 | T16T | acG | acT | 1 | 1 | AU.2 | 0.002421 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.10 | 0.00053 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.100 | 0.000046 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.101 | 0.00049 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.101 | 0.00049 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.101 | 0.00049 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.102 | 0.000027 |
N | 16 | T16K | aCg | aAg | 1 | 1 | AY.102 | 0.000027 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.106 | 0.000335 |
N | 16 | T16T | acG | acA | 1 | 1 | AY.108 | 0.001103 |
N | 16 | T16S | Acg | Tcg | 1 | 1 | AY.113 | 0.000142 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.116 | 0.000287 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.116.1 | 0.000311 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.118 | 0.000063 |
N | 16 | T16K | aCg | aAg | 1 | 1 | AY.120 | 0.000037 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.120 | 0.000037 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.120 | 0.000037 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.120.1 | 0.000321 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.16.1 | 0.00047 |
N | 16 | T16L | ACg | CTg | 1 | 1 | AY.18 | 0.010101 |
N | 16 | T16K | aCg | aAg | 1 | 1 | AY.23 | 0.00007 |
N | 16 | T16L | ACg | CTg | 1 | 1 | AY.23 | 0.00007 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.23 | 0.00007 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.23 | 0.00007 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.23 | 0.00007 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.25 | 0.000006 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.27 | 0.000065 |
N | 16 | T16S | Acg | Tcg | 1 | 1 | AY.27 | 0.000065 |
N | 16 | T16S | Acg | Tcg | 1 | 1 | AY.30 | 0.000396 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.31 | 0.018519 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.33 | 0.000067 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.33 | 0.000067 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.38 | 0.000499 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.39.1 | 0.00004 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.4 | 0.000002 |
N | 16 | T16T | acG | acA | 1 | 1 | AY.4.1 | 0.000737 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.4.4 | 0.000409 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.4.4 | 0.000409 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.40 | 0.000964 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.42 | 0.00004 |
N | 16 | T16S | Acg | Tcg | 1 | 1 | AY.43 | 0.000004 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.44 | 0.000006 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.44 | 0.000006 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.45 | 0.000122 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.46.1 | 0.001027 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.46.3 | 0.000934 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.46.6 | 0.000072 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.48 | 0.000465 |
N | 16 | T16K | aCg | aAg | 1 | 1 | AY.5 | 0.000021 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.5 | 0.000021 |
N | 16 | T16del | ACG | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 16 | T16T | acG | acA | 1 | 1 | AY.5.4 | 0.000277 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.51 | 0.000909 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.52 | 0.000814 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.56 | 0.001605 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.62 | 0.000436 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.64 | 0.000595 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.66 | 0.00107 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.7 | 0.000196 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.7 | 0.000196 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.7.1 | 0.000113 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.72 | 0.001361 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.73 | 0.000665 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.75.1 | 0.00018 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.78 | 0.001541 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | AY.81 | 0.001992 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.85 | 0.000427 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.86 | 0.00083 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.9 | 0.000068 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.9.1 | 0.000084 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.9.2 | 0.000037 |
N | 16 | T16T | acG | acT | 1 | 1 | AY.91 | 0.00073 |
N | 16 | T16M | aCg | aTg | 1 | 1 | AY.93 | 0.000273 |
N | 16 | T16T | acG | acA | 1 | 1 | B | 0.000128 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | B.1 | 0.000009 |
N | 16 | T16P | Acg | Ccg | 1 | 1 | B.1 | 0.000009 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.1 | 0.000327 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.117 | 0.009709 |
N | 16 | T16del | ACG | --- | 1 | 1 | B.1.1.216 | 0.00089 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.219 | 0.005 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.220 | 0.001859 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.222 | 0.000204 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.1.231 | 0.003096 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.273 | 0.006757 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.282 | 0.011628 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.1.285 | 0.006536 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.298 | 0.000862 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.304 | 0.002809 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.306 | 0.000438 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.33 | 0.000421 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.369 | 0.000446 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.37 | 0.000193 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.37 | 0.000193 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.372 | 0.000689 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.1.409 | 0.002833 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.420 | 0.001006 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.435 | 0.034483 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.46 | 0.004367 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.461 | 0.012048 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.464 | 0.001473 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.1.483 | 0.038462 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.1.5 | 0.008333 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.1.518 | 0.006329 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.521 | 0.005348 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.523 | 0.001563 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.1.58 | 0.005376 |
N | 16 | T16P | Acg | Ccg | 1 | 1 | B.1.1.7 | 0.000001 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.1.70 | 0.000341 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.1.90 | 0.1 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.110 | 0.004525 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.120 | 0.007692 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.146 | 0.004237 |
N | 16 | T16I | aCG | aTT | 1 | 1 | B.1.160 | 0.000031 |
N | 16 | T16I | aCG | aTA | 1 | 1 | B.1.177.10 | 0.000878 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.11 | 0.001698 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.12 | 0.000152 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.16 | 0.000664 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.177.20 | 0.001517 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.177.23 | 0.003236 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.32 | 0.00135 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.177.33 | 0.001645 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.35 | 0.000691 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.4 | 0.000211 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.177.42 | 0.000894 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.177.44 | 0.000519 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.45 | 0.000381 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.177.45 | 0.000381 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.177.46 | 0.000918 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.5 | 0.001242 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.57 | 0.000281 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.62 | 0.001192 |
N | 16 | T16L | ACg | TTg | 1 | 1 | B.1.177.63 | 0.002703 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.76 | 0.002494 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.77 | 0.000726 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.81 | 0.000189 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.177.82 | 0.000477 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.83 | 0.001481 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.87 | 0.000728 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.177.9 | 0.001332 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.199 | 0.004132 |
N | 16 | T16del | ACG | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.206 | 0.000816 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.210 | 0.002132 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.214.2 | 0.0006 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.221 | 0.000071 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | B.1.221 | 0.000071 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.232 | 0.000537 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.234 | 0.000132 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.237 | 0.004975 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.240 | 0.000216 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.258.5 | 0.008772 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.265 | 0.001271 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.314 | 0.007519 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.320 | 0.001245 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.332 | 0.003497 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.349 | 0.000715 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.351.2 | 0.000303 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.351.3 | 0.000876 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.36.16 | 0.001425 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.36.24 | 0.006173 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.36.35 | 0.002604 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.36.7 | 0.004 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.36.8 | 0.001 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.361 | 0.001289 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.381 | 0.007812 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.395 | 0.007042 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.400 | 0.000429 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.402 | 0.009804 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.416 | 0.001269 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.423 | 0.010204 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.425 | 0.002994 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.426 | 0.001009 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.438.1 | 0.000107 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.443 | 0.004673 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.443 | 0.004673 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.452 | 0.013699 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.467 | 0.04 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.497 | 0.000315 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.503 | 0.002488 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.504 | 0.03125 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.560 | 0.00463 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.561 | 0.000397 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.564 | 0.000426 |
N | 16 | T16S | Acg | Tcg | 1 | 1 | B.1.564 | 0.000426 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.570 | 0.002941 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.571 | 0.009709 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.575.1 | 0.002439 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.576 | 0.000907 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.577 | 0.000687 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | B.1.595 | 0.000261 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.623 | 0.000536 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.627 | 0.00202 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.628 | 0.000352 |
N | 16 | T16T | acG | acT | 1 | 1 | B.1.637 | 0.000073 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.1.88.1 | 0.004808 |
N | 16 | T16T | acG | acA | 1 | 1 | B.1.9.4 | 0.006135 |
N | 16 | T16T | acG | acT | 1 | 1 | B.39 | 0.002331 |
N | 16 | T16T | acG | acT | 1 | 1 | B.4.5 | 0.011905 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.40 | 0.000364 |
N | 16 | T16M | aCg | aTg | 1 | 1 | B.6.6 | 0.000889 |
N | 16 | T16T | acG | acA | 1 | 1 | C.33 | 0.058824 |
N | 16 | T16T | acG | acT | 1 | 1 | C.36.3 | 0.000567 |
N | 16 | T16M | aCg | aTg | 1 | 1 | C.37 | 0.000116 |
N | 16 | T16T | acG | acA | 1 | 1 | C.9 | 0.030303 |
N | 16 | T16M | aCg | aTg | 1 | 1 | D.2 | 0.000075 |
N | 16 | T16T | acG | acA | 1 | 1 | N.6 | 0.007092 |
N | 16 | T16T | acG | acT | 1 | 1 | P.1.1 | 0.000318 |
N | 16 | T16T | acG | acA | 1 | 1 | P.1.12 | 0.000484 |
N | 16 | T16M | aCg | aTg | 1 | 1 | P.1.12 | 0.000484 |
N | 16 | T16M | aCg | aTg | 1 | 1 | P.1.14 | 0.000048 |
N | 16 | T16T | acG | acT | 1 | 1 | P.1.16 | 0.000374 |
N | 16 | T16M | aCg | aTg | 1 | 1 | P.1.17 | 0.000162 |
N | 16 | T16T | acG | acT | 1 | 1 | P.1.7 | 0.000319 |
N | 16 | T16del | ACG | --- | 1 | 1 | P.1.7 | 0.000319 |
N | 16 | T16M | aCg | aTg | 1 | 1 | Q.1 | 0.000126 |
N | 16 | T16T | acG | acT | 1 | 1 | Q.1 | 0.000126 |
N | 16 | T16A | Acg | Gcg | 1 | 1 | Q.2 | 0.000613 |
N | 16 | T16M | aCg | aTg | 1 | 1 | Q.3 | 0.000145 |
N | 16 | T16T | acG | acT | 1 | 1 | R.1 | 0.00009 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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