CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 158

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N158V158VsyngtGgtT293023240.79317428745-28747
N158V158VsyngtGgtA29304760.16245728745-28747
N158V158VsyngtGgtC29301300.044368628745-28747
N158V158LnonsynGtgTtg1781560.87640528745-28747
N158V158LnonsynGtgCtg178220.12359628745-28747
N158V158AnonsyngTggCg29280.96551728745-28747
N158V158AnonsyngTGgCA2910.034482828745-28747
N158V158MnonsynGtgAtg2525128745-28747
N158V158deldelGTG---1414128745-28747
N158V158GnonsyngTggGg22128745-28747
N158V158del2delgTGg--11128745-28747
N158V158NnonsynGTGAAT11128745-28747
N158V158PnonsynGTgCCg11128745-28747
N158V158InonsynGtGAtT11128745-28747

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N158V158VgtGgtT23242930All0.000444
N158V158VgtGgtA4762930All0.000091
N158V158VgtGgtC1302930All0.000025
N158V158VgtGgtT571727B.1.1.70.000511
N158V158VgtGgtA150727B.1.1.70.000134
N158V158VgtGgtC6727B.1.1.70.000005
N158V158VgtGgtT232232B.1.1460.983051
N158V158VgtGgtT192192AY.7.20.107383
N158V158VgtGgtT178183AY.440.001083
N158V158VgtGgtA5183AY.440.00003
N158V158LGtgTtg156178All0.00003
N158V158LGtgCtg22178All0.000004
N158V158VgtGgtT155178AY.40.000241
N158V158VgtGgtC15178AY.40.000023
N158V158VgtGgtA8178AY.40.000012
N158V158VgtGgtA144144AY.90.009734
N158V158VgtGgtT138143B.1.2210.009803
N158V158VgtGgtA5143B.1.2210.000355
N158V158VgtGgtT97100B.1.10.00176
N158V158VgtGgtA2100B.1.10.000036
N158V158VgtGgtC1100B.1.10.000018
N158V158VgtGgtT5798B.1.617.20.000215
N158V158VgtGgtA2398B.1.617.20.000087
N158V158VgtGgtC1898B.1.617.20.000068
N158V158VgtGgtT7777AY.330.005142
N158V158VgtGgtT6365B.1.1.5190.002502
N158V158VgtGgtA265B.1.1.5190.000079
N158V158VgtGgtC4364AY.250.000259
N158V158VgtGgtT2064AY.250.00012
N158V158VgtGgtA164AY.250.000006
N158V158VgtGgtT4064AY.430.000177
N158V158VgtGgtA2464AY.430.000106
N158V158VgtGgtT5263B.10.000476
N158V158VgtGgtA963B.10.000082
N158V158VgtGgtC263B.10.000018
N158V158VgtGgtT3235AY.30.000318
N158V158VgtGgtA335AY.30.00003
N158V158VgtGgtT3235AY.4.20.000694
N158V158VgtGgtA335AY.4.20.000065
N158V158AgTggCg2829All0.000005
N158V158AgTGgCA129All0
N158V158VgtGgtT2327AY.1030.000143
N158V158VgtGgtA327AY.1030.000019
N158V158VgtGgtC127AY.1030.000006
N158V158MGtgAtg2525All0.000005
N158V158LGtgTtg2125AY.40.000033
N158V158LGtgCtg425AY.40.000006
N158V158VgtGgtT2222AY.260.000623
N158V158VgtGgtT2222B.1.1.2310.068111
N158V158VgtGgtT1521AY.1020.000398
N158V158VgtGgtA621AY.1020.000159
N158V158VgtGgtT2121AY.5.30.007085
N158V158LGtgTtg1720B.1.617.20.000064
N158V158LGtgCtg320B.1.617.20.000011
N158V158LGtgTtg1919B.1.1.70.000017
N158V158VgtGgtT1019B.1.20.000088
N158V158VgtGgtA919B.1.20.000079
N158V158VgtGgtA1019B.1.5260.000235
N158V158VgtGgtT919B.1.5260.000212
N158V158VgtGgtC1616A.2.5.10.076923
N158V158VgtGgtT1515B.1.258.170.00156
N158V158delGTG---1414All0.000003
N158V158LGtgTtg1414AY.250.000084
N158V158VgtGgtC1014AY.420.000402
N158V158VgtGgtT414AY.420.000161
N158V158LGtgTtg1112AY.1030.000068
N158V158LGtgCtg112AY.1030.000006
N158V158VgtGgtT1212AY.340.001164
N158V158VgtGgtT1112B.1.1770.000145
N158V158VgtGgtA112B.1.1770.000013
N158V158VgtGgtT1111AY.230.000767
N158V158VgtGgtT1011P.10.000158
N158V158VgtGgtC111P.10.000016
N158V158VgtGgtA911P.1.150.002091
N158V158VgtGgtT211P.1.150.000465
N158V158VgtGgtA1010AY.46.40.001645
N158V158VgtGgtC610AY.46.50.00119
N158V158VgtGgtT410AY.46.50.000794
N158V158VgtGgtT79AY.750.000392
N158V158VgtGgtA29AY.750.000112
N158V158VgtGgtT48AY.1180.000251
N158V158VgtGgtC38AY.1180.000188
N158V158VgtGgtA18AY.1180.000063
N158V158VgtGgtT48AY.390.000099
N158V158VgtGgtA48AY.390.000099
N158V158LGtgTtg78AY.430.000031
N158V158LGtgCtg18AY.430.000004
N158V158VgtGgtT88B.1.1.1930.888889
N158V158VgtGgtT88B.1.1.330.003367
N158V158VgtGgtA58B.1.3510.000149
N158V158VgtGgtT38B.1.3510.000089
N158V158VgtGgtT67B.1.360.000875
N158V158VgtGgtA17B.1.360.000146
N158V158LGtgCtg66AY.16.10.00282
N158V158LGtgTtg66AY.30.00006
N158V158MGtgAtg66AY.40.000009
N158V158VgtGgtT66AY.4.2.10.000894
N158V158VgtGgtT56AY.460.00052
N158V158VgtGgtA16AY.460.000104
N158V158VgtGgtC56AY.700.001043
N158V158VgtGgtA16AY.700.000209
N158V158VgtGgtT66B.1.1.700.002046
N158V158VgtGgtA36B.1.2580.0002
N158V158VgtGgtT36B.1.2580.0002
N158V158VgtGgtT55AY.1000.00023
N158V158VgtGgtT45AY.1190.000141
N158V158VgtGgtA15AY.1190.000035
N158V158AgTggCg55AY.250.00003
N158V158VgtGgtT35AY.9.10.000251
N158V158VgtGgtA25AY.9.10.000167
N158V158LGtgTtg34AY.4.20.000065
N158V158LGtgCtg14AY.4.20.000022
N158V158VgtGgtT44AY.4.40.001637
N158V158VgtGgtT44B.1.1.2160.003562
N158V158LGtgTtg44B.1.1.2320.00726
N158V158VgtGgtT44B.1.1.4190.02963
N158V158delGTG---44B.1.1.70.000004
N158V158VgtGgtT44B.1.1600.000125
N158V158LGtgTtg44B.1.177.170.003284
N158V158VgtGgtT34B.1.2430.000209
N158V158VgtGgtA14B.1.2430.00007
N158V158VgtGgtT44B.1.438.10.000429
N158V158VgtGgtT44B.1.5250.000453
N158V158LGtgTtg44D.20.0003
N158V158VgtGgtA33AY.300.001187
N158V158VgtGgtT33AY.320.001597
N158V158LGtgCtg23AY.440.000012
N158V158LGtgTtg13AY.440.000006
N158V158VgtGgtA23AY.470.000062
N158V158VgtGgtT13AY.470.000031
N158V158VgtGgtT23AY.50.000041
N158V158VgtGgtA13AY.50.000021
N158V158VgtGgtT33AY.790.003632
N158V158VgtGgtT33B0.000383
N158V158VgtGgtT33B.1.1.3330.003229
N158V158MGtgAtg33B.1.1.70.000003
N158V158AgTggCg33B.1.1.70.000003
N158V158LGtgTtg33B.1.1770.00004
N158V158VgtGgtT33B.1.4700.004213
N158V158VgtGgtT22A0.000774
N158V158GgTggGg22All0
N158V158VgtGgtT22AU.20.004843
N158V158VgtGgtT12AY.1010.00049
N158V158VgtGgtA12AY.1010.00049
N158V158AgTggCg22AY.1030.000012
N158V158VgtGgtA12AY.130.000161
N158V158VgtGgtT12AY.130.000161
N158V158VgtGgtA22AY.140.000176
N158V158VgtGgtT22AY.200.000078
N158V158AgTggCg22AY.330.000134
N158V158LGtgCtg12AY.390.000025
N158V158LGtgTtg12AY.390.000025
N158V158delGTG---22AY.40.000003
N158V158AgTggCg22AY.40.000003
N158V158LGtgTtg22AY.420.00008
N158V158VgtGgtT22AY.450.000243
N158V158VgtGgtT22AY.46.60.000144
N158V158LGtgTtg22AY.50.000041
N158V158VgtGgtT22AY.610.00021
N158V158VgtGgtT22AY.670.000929
N158V158LGtgTtg22AY.7.10.000225
N158V158VgtGgtA12B.1.1.2140.000055
N158V158VgtGgtT12B.1.1.2140.000055
N158V158VgtGgtT22B.1.1.4160.00181
N158V158AgTggCg22B.1.1600.000062
N158V158MGtgAtg22B.1.177.450.000762
N158V158VgtGgtT22B.1.177.70.00033
N158V158LGtgTtg22B.1.20.000018
N158V158LGtgTtg22B.1.4290.000047
N158V158LGtgTtg22B.1.5760.001813
N158V158VgtGgtA22B.1.5960.000174
N158V158VgtGgtT22B.1.617.10.000258
N158V158AgTggCg22B.1.617.20.000008
N158V158VgtGgtT22R.10.00018
N158V158LGtgTtg11A.2.40.003367
N158V158NGTGAAT11All0
N158V158IGtGAtT11All0
N158V158del2gTGg--11All0
N158V158PGTgCCg11All0
N158V158VgtGgtA11AY.100.00053
N158V158MGtgAtg11AY.1000.000046
N158V158AgTggCg11AY.1000.000046
N158V158MGtgAtg11AY.1030.000006
N158V158GgTggGg11AY.1030.000006
N158V158VgtGgtT11AY.1060.000335
N158V158MGtgAtg11AY.116.10.000311
N158V158VgtGgtT11AY.1170.000085
N158V158AgTggCg11AY.1180.000063
N158V158MGtgAtg11AY.1190.000035
N158V158VgtGgtT11AY.1200.000037
N158V158LGtgCtg11AY.1200.000037
N158V158MGtgAtg11AY.1200.000037
N158V158VgtGgtT11AY.120.10.000321
N158V158VgtGgtT11AY.1210.000135
N158V158LGtgTtg11AY.140.000088
N158V158VgtGgtT11AY.160.00038
N158V158VgtGgtT11AY.16.10.00047
N158V158VgtGgtT11AY.190.00114
N158V158VgtGgtC11AY.220.002092
N158V158LGtgTtg11AY.290.000016
N158V158VgtGgtT11AY.290.000016
N158V158MGtgAtg11AY.30.00001
N158V158AgTggCg11AY.3.10.000085
N158V158LGtgTtg11AY.3.10.000085
N158V158LGtgTtg11AY.330.000067
N158V158VgtGgtT11AY.34.10.00051
N158V158VgtGgtT11AY.380.000499
N158V158MGtgAtg11AY.390.000025
N158V158LGtgTtg11AY.39.10.00004
N158V158VgtGgtT11AY.39.10.00004
N158V158IGtGAtT11AY.40.000002
N158V158VgtGgtA11AY.4.10.000737
N158V158LGtgTtg11AY.4.50.000107
N158V158MGtgAtg11AY.4.50.000107
N158V158VgtGgtA11AY.4.50.000107
N158V158AgTggCg11AY.430.000004
N158V158GgTggGg11AY.430.000004
N158V158delGTG---11AY.430.000004
N158V158VgtGgtT11AY.46.20.000635
N158V158MGtgAtg11AY.50.000021
N158V158VgtGgtA11AY.5.40.000277
N158V158LGtgTtg11AY.520.000814
N158V158LGtgTtg11AY.60.000041
N158V158LGtgTtg11AY.630.000387
N158V158LGtgTtg11AY.700.000209
N158V158VgtGgtA11AY.740.000116
N158V158VgtGgtA11AY.75.10.00018
N158V158VgtGgtA11AY.80.000606
N158V158VgtGgtT11AY.800.001129
N158V158VgtGgtT11AY.840.000437
N158V158VgtGgtT11AY.850.000427
N158V158AgTggCg11AY.9.20.000037
N158V158VgtGgtT11AY.9.20.000037
N158V158LGtgTtg11AY.920.000287
N158V158VgtGgtA11AY.960.002075
N158V158MGtgAtg11AY.960.002075
N158V158VgtGgtT11AY.970.001701
N158V158LGtgTtg11AY.98.10.000048
N158V158VgtGgtT11AY.98.10.000048
N158V158LGtgTtg11B0.000128
N158V158del2gTGg--11B.10.000009
N158V158LGtgTtg11B.10.000009
N158V158MGtgAtg11B.1.10.000018
N158V158VgtGgtT11B.1.1.2360.006897
N158V158VgtGgtT11B.1.1.2370.005405
N158V158LGtgTtg11B.1.1.2980.000862
N158V158VgtGgtT11B.1.1.3160.000925
N158V158VgtGgtT11B.1.1.3170.000412
N158V158VgtGgtT11B.1.1.390.00051
N158V158LGtgTtg11B.1.1.390.00051
N158V158VgtGgtT11B.1.1.4110.014706
N158V158delGTG---11B.1.1.4200.001006
N158V158VgtGgtT11B.1.1.570.011494
N158V158AgTggCg11B.1.1.700.000341
N158V158VgtGgtT11B.1.1110.001175
N158V158LGtgTtg11B.1.1600.000031
N158V158VgtGgtT11B.1.160.90.007194
N158V158VgtGgtT11B.1.1690.014925
N158V158delGTG---11B.1.1770.000013
N158V158AgTggCg11B.1.1770.000013
N158V158VgtGgtT11B.1.177.40.000211
N158V158LGtgTtg11B.1.177.440.000519
N158V158LGtgTtg11B.1.177.570.000281
N158V158delGTG---11B.1.177.630.002703
N158V158VgtGgtT11B.1.177.650.000665
N158V158LGtgCtg11B.1.177.730.000566
N158V158delGTG---11B.1.177.830.001481
N158V158MGtgAtg11B.1.20.000009
N158V158AgTggCg11B.1.20.000009
N158V158VgtGgtT11B.1.2360.002053
N158V158VgtGgtC11B.1.3050.002151
N158V158VgtGgtT11B.1.3110.000275
N158V158VgtGgtA11B.1.3210.034483
N158V158VgtGgtT11B.1.3500.002933
N158V158LGtgTtg11B.1.3510.00003
N158V158VgtGgtT11B.1.351.20.000303
N158V158VgtGgtA11B.1.36.290.000517
N158V158VgtGgtT11B.1.36.80.001
N158V158VgtGgtT11B.1.3620.001541
N158V158LGtgTtg11B.1.3670.000792
N158V158AgTggCg11B.1.3750.00082
N158V158VgtGgtT11B.1.3750.00082
N158V158VgtGgtT11B.1.3980.002976
N158V158LGtgTtg11B.1.4000.000429
N158V158VgtGgtT11B.1.4270.00005
N158V158delGTG---11B.1.4270.00005
N158V158VgtGgtT11B.1.4290.000024
N158V158LGtgTtg11B.1.4620.007246
N158V158VgtGgtA11B.1.4680.005714
N158V158VgtGgtT11B.1.4970.000315
N158V158VgtGgtT11B.1.5090.000866
N158V158AgTGgCA11B.1.5250.000113
N158V158NGTGAAT11B.1.5250.000113
N158V158LGtgTtg11B.1.5260.000024
N158V158VgtGgtA11B.1.5670.003333
N158V158LGtgTtg11B.1.5900.004545
N158V158VgtGgtT11B.1.5950.000261
N158V158LGtgCtg11B.1.5960.000087
N158V158VgtGgtT11B.1.6000.005848
N158V158delGTG---11B.1.617.20.000004
N158V158PGTgCCg11B.1.617.20.000004
N158V158MGtgAtg11B.1.617.20.000004
N158V158VgtGgtT11B.1.6200.000946
N158V158VgtGgtC11B.1.6360.006711
N158V158LGtgTtg11B.1.6370.000073
N158V158VgtGgtT11B.1.6370.000073
N158V158VgtGgtT11B.1.9.10.032258
N158V158VgtGgtT11B.4.80.071429
N158V158VgtGgtA11C.1.20.004255
N158V158VgtGgtT11C.230.005814
N158V158MGtgAtg11C.370.000116
N158V158VgtGgtT11C.370.000116
N158V158VgtGgtT11C.80.004464
N158V158AgTggCg11D.20.000075
N158V158VgtGgtT11N.90.005952
N158V158delGTG---11P.10.000016
N158V158LGtgTtg11P.10.000016
N158V158VgtGgtT11P.1.140.000048
N158V158VgtGgtT11P.1.70.000319
N158V158LGtgTtg11Q.10.000126
N158V158VgtGgtA11Q.30.000145