CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 157 & Codon = Ctc

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N157I157LnonsynAtcCtc56550.98214328742-28744

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N157I157LAtcCtc5556All0.000011
N157I157LAtcCtc2020B.1.617.20.000075
N157I157LAtcCtc77B.1.1.70.000006
N157I157LAtcCtc44AY.430.000018
N157I157LAtcCtc44B.1.1.330.001684
N157I157LAtcCtc33B.1.177.770.002179
N157I157LAtcCtc22AY.30.00002
N157I157LAtcCtc22AY.420.00008
N157I157LAtcCtc22AY.980.000158
N157I157LAtcCtc110.055556
N157I157LAtcCtc11AY.16.10.00047
N157I157LAtcCtc11AY.250.000006
N157I157LAtcCtc11AY.40.000002
N157I157LAtcCtc11AY.440.000006
N157I157LAtcCtc11AY.50.000021
N157I157LAtcCtc11AY.600.000938
N157I157LAtcCtc11AY.90.000068
N157I157LAtcCtc11B.1.3560.001727
N157I157LAtcCtc11B.1.5250.000113
N157I157LAtcCtc11B.1.617.10.000129

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.