CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 152 | A152S | nonsyn | Gct | Tct | 11698 | 11696 | 0.999829 | 28727-28729 | |
N | 152 | A152S | nonsyn | GCT | AGC | 11698 | 1 | 0.0000854847 | 28727-28729 | |
N | 152 | A152S | nonsyn | GCt | AGt | 11698 | 1 | 0.0000854847 | 28727-28729 | |
N | 152 | A152V | nonsyn | gCt | gTt | 2108 | 2108 | 1 | 28727-28729 | |
N | 152 | A152A | syn | gcT | gcG | 1522 | 1051 | 0.690539 | 28727-28729 | |
N | 152 | A152A | syn | gcT | gcC | 1522 | 449 | 0.295007 | 28727-28729 | |
N | 152 | A152A | syn | gcT | gcA | 1522 | 22 | 0.0144547 | 28727-28729 | |
N | 152 | A152T | nonsyn | Gct | Act | 281 | 277 | 0.985765 | 28727-28729 | |
N | 152 | A152T | nonsyn | GcT | AcA | 281 | 2 | 0.00711744 | 28727-28729 | |
N | 152 | A152T | nonsyn | GcT | AcG | 281 | 1 | 0.00355872 | 28727-28729 | |
N | 152 | A152T | nonsyn | GcT | AcC | 281 | 1 | 0.00355872 | 28727-28729 | |
N | 152 | A152D | nonsyn | gCt | gAt | 119 | 119 | 1 | 28727-28729 | |
N | 152 | A152P | nonsyn | Gct | Cct | 35 | 35 | 1 | 28727-28729 | |
N | 152 | A152G | nonsyn | gCt | gGt | 21 | 19 | 0.904762 | 28727-28729 | |
N | 152 | A152G | nonsyn | gCT | gGC | 21 | 1 | 0.047619 | 28727-28729 | |
N | 152 | A152G | nonsyn | gCT | gGA | 21 | 1 | 0.047619 | 28727-28729 | |
N | 152 | A152F | nonsyn | GCt | TTt | 8 | 8 | 1 | 28727-28729 | |
N | 152 | A152del | del | GCT | --- | 7 | 7 | 1 | 28727-28729 | |
N | 152 | A152del1 | del | Gct | -ct | 5 | 4 | 0.8 | 28727-28729 | |
N | 152 | A152del1 | del | gcT | gc- | 5 | 1 | 0.2 | 28727-28729 | |
N | 152 | A152E | nonsyn | gCT | gAA | 2 | 1 | 0.5 | 28727-28729 | |
N | 152 | A152K | nonsyn | GCT | AAA | 2 | 1 | 0.5 | 28727-28729 | |
N | 152 | A152E | nonsyn | gCT | gAG | 2 | 1 | 0.5 | 28727-28729 | |
N | 152 | A152K | nonsyn | GCT | AAG | 2 | 1 | 0.5 | 28727-28729 | |
N | 152 | A152del2 | del | GCT | A-- | 1 | 1 | 1 | 28727-28729 | |
N | 152 | A152R | nonsyn | GCT | AGA | 1 | 1 | 1 | 28727-28729 | |
N | 152 | A152L | nonsyn | GCt | CTt | 1 | 1 | 1 | 28727-28729 | |
N | 152 | A152N | nonsyn | GCt | AAt | 1 | 1 | 1 | 28727-28729 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 152 | A152S | Gct | Tct | 11696 | 11698 | All | 0.002237 |
N | 152 | A152S | GCT | AGC | 1 | 11698 | All | 0 |
N | 152 | A152S | GCt | AGt | 1 | 11698 | All | 0 |
N | 152 | A152V | gCt | gTt | 2108 | 2108 | All | 0.000403 |
N | 152 | A152S | Gct | Tct | 1960 | 1960 | B.1.1.7 | 0.001755 |
N | 152 | A152S | Gct | Tct | 1605 | 1605 | B.1.617.2 | 0.006043 |
N | 152 | A152A | gcT | gcG | 1051 | 1522 | All | 0.000201 |
N | 152 | A152A | gcT | gcC | 449 | 1522 | All | 0.000086 |
N | 152 | A152A | gcT | gcA | 22 | 1522 | All | 0.000004 |
N | 152 | A152S | Gct | Tct | 1364 | 1364 | AY.43 | 0.006043 |
N | 152 | A152S | Gct | Tct | 1061 | 1061 | AY.44 | 0.006458 |
N | 152 | A152V | gCt | gTt | 888 | 888 | B.1.1.7 | 0.000795 |
N | 152 | A152S | Gct | Tct | 766 | 766 | AY.103 | 0.004756 |
N | 152 | A152S | Gct | Tct | 687 | 687 | AY.4 | 0.001069 |
N | 152 | A152A | gcT | gcG | 646 | 646 | AY.75 | 0.03619 |
N | 152 | A152S | Gct | Tct | 639 | 639 | AY.25 | 0.003843 |
N | 152 | A152A | gcT | gcG | 313 | 324 | B.1.617.2 | 0.001179 |
N | 152 | A152A | gcT | gcC | 11 | 324 | B.1.617.2 | 0.000041 |
N | 152 | A152T | Gct | Act | 277 | 281 | All | 0.000053 |
N | 152 | A152T | GcT | AcA | 2 | 281 | All | 0 |
N | 152 | A152T | GcT | AcG | 1 | 281 | All | 0 |
N | 152 | A152T | GcT | AcC | 1 | 281 | All | 0 |
N | 152 | A152A | gcT | gcC | 257 | 258 | AY.26 | 0.007276 |
N | 152 | A152A | gcT | gcG | 1 | 258 | AY.26 | 0.000028 |
N | 152 | A152V | gCt | gTt | 216 | 216 | AY.4 | 0.000336 |
N | 152 | A152S | Gct | Tct | 185 | 185 | B.1.564 | 0.07879 |
N | 152 | A152S | Gct | Tct | 177 | 177 | AY.107 | 0.082479 |
N | 152 | A152S | Gct | Tct | 173 | 173 | AY.5.4 | 0.047869 |
N | 152 | A152S | Gct | Tct | 140 | 140 | B.1.492 | 0.985915 |
N | 152 | A152S | Gct | Tct | 130 | 130 | AY.5 | 0.002684 |
N | 152 | A152S | Gct | Tct | 129 | 129 | AY.79 | 0.156174 |
N | 152 | A152S | Gct | Tct | 121 | 121 | B.1.1.528 | 0.581731 |
N | 152 | A152D | gCt | gAt | 119 | 119 | All | 0.000023 |
N | 152 | A152D | gCt | gAt | 105 | 105 | B.1.1.7 | 0.000094 |
N | 152 | A152S | Gct | Tct | 104 | 104 | B.1.2 | 0.000916 |
N | 152 | A152T | Gct | Act | 103 | 103 | AY.43 | 0.000456 |
N | 152 | A152V | gCt | gTt | 97 | 97 | AY.103 | 0.000602 |
N | 152 | A152V | gCt | gTt | 95 | 95 | AY.43 | 0.000421 |
N | 152 | A152S | Gct | Tct | 93 | 93 | B.1 | 0.000852 |
N | 152 | A152S | Gct | Tct | 90 | 90 | AY.102 | 0.002386 |
N | 152 | A152V | gCt | gTt | 87 | 87 | AY.36 | 0.012895 |
N | 152 | A152A | gcT | gcC | 62 | 86 | B.1.1.7 | 0.000056 |
N | 152 | A152A | gcT | gcA | 17 | 86 | B.1.1.7 | 0.000015 |
N | 152 | A152A | gcT | gcG | 7 | 86 | B.1.1.7 | 0.000006 |
N | 152 | A152S | Gct | Tct | 85 | 85 | B.1.429 | 0.002 |
N | 152 | A152S | Gct | Tct | 81 | 81 | AY.42 | 0.003259 |
N | 152 | A152S | Gct | Tct | 79 | 79 | AY.33 | 0.005275 |
N | 152 | A152S | Gct | Tct | 77 | 77 | AY.46 | 0.008014 |
N | 152 | A152S | Gct | Tct | 74 | 74 | AY.4.2 | 0.001605 |
N | 152 | A152S | Gct | Tct | 73 | 73 | AY.85 | 0.031183 |
N | 152 | A152S | Gct | Tct | 72 | 72 | AY.39 | 0.001779 |
N | 152 | A152S | Gct | Tct | 66 | 66 | AY.119 | 0.00233 |
N | 152 | A152S | Gct | Tct | 66 | 66 | B.1.160 | 0.002058 |
N | 152 | A152V | gCt | gTt | 63 | 63 | AY.44 | 0.000383 |
N | 152 | A152S | Gct | Tct | 63 | 63 | AY.98.1 | 0.003051 |
N | 152 | A152S | Gct | Tct | 63 | 63 | P.1 | 0.000993 |
N | 152 | A152S | Gct | Tct | 60 | 60 | B.1.1 | 0.001088 |
N | 152 | A152S | Gct | Tct | 59 | 59 | B.1.177 | 0.000777 |
N | 152 | A152T | Gct | Act | 57 | 57 | B.1.1.7 | 0.000051 |
N | 152 | A152S | Gct | Tct | 51 | 51 | B.1.526 | 0.001199 |
N | 152 | A152V | gCt | gTt | 47 | 47 | B.1.177 | 0.000619 |
N | 152 | A152V | gCt | gTt | 46 | 46 | B.1.617.2 | 0.000173 |
N | 152 | A152S | Gct | Tct | 44 | 44 | AY.3 | 0.000438 |
N | 152 | A152T | Gct | Act | 42 | 42 | AY.4 | 0.000065 |
N | 152 | A152S | Gct | Tct | 42 | 42 | B.1.1.524 | 0.875 |
N | 152 | A152S | Gct | Tct | 38 | 38 | B.1.619.1 | 0.024375 |
N | 152 | A152S | Gct | Tct | 37 | 37 | B.1.369.1 | 1 |
N | 152 | A152S | Gct | Tct | 36 | 36 | AY.9 | 0.002433 |
N | 152 | A152P | Gct | Cct | 35 | 35 | All | 0.000007 |
N | 152 | A152S | Gct | Tct | 35 | 35 | B.1.221 | 0.002486 |
N | 152 | A152A | gcT | gcG | 34 | 35 | B.1.429 | 0.0008 |
N | 152 | A152A | gcT | gcC | 1 | 35 | B.1.429 | 0.000024 |
N | 152 | A152V | gCt | gTt | 33 | 33 | AY.4.2 | 0.000716 |
N | 152 | A152S | Gct | Tct | 33 | 33 | B.1.1.519 | 0.00131 |
N | 152 | A152S | Gct | Tct | 32 | 32 | AY.46.6 | 0.002311 |
N | 152 | A152V | gCt | gTt | 32 | 32 | AY.98.1 | 0.00155 |
N | 152 | A152S | Gct | Tct | 31 | 31 | AY.9.1 | 0.002595 |
N | 152 | A152S | Gct | Tct | 31 | 31 | B.1.1.263 | 0.048287 |
N | 152 | A152S | Gct | Tct | 29 | 29 | AY.36 | 0.004298 |
N | 152 | A152A | gcT | gcC | 28 | 29 | AY.4 | 0.000044 |
N | 152 | A152A | gcT | gcG | 1 | 29 | AY.4 | 0.000002 |
N | 152 | A152S | Gct | Tct | 29 | 29 | B.1.438.1 | 0.003111 |
N | 152 | A152S | Gct | Tct | 27 | 27 | AY.20 | 0.001049 |
N | 152 | A152S | Gct | Tct | 25 | 25 | B.1.351 | 0.000743 |
N | 152 | A152V | gCt | gTt | 24 | 24 | B.1.2 | 0.000211 |
N | 152 | A152S | Gct | Tct | 23 | 23 | AY.63 | 0.008897 |
N | 152 | A152S | Gct | Tct | 23 | 23 | P.1.17 | 0.00372 |
N | 152 | A152G | gCt | gGt | 19 | 21 | All | 0.000004 |
N | 152 | A152G | gCT | gGC | 1 | 21 | All | 0 |
N | 152 | A152G | gCT | gGA | 1 | 21 | All | 0 |
N | 152 | A152V | gCt | gTt | 21 | 21 | AY.3 | 0.000209 |
N | 152 | A152V | gCt | gTt | 20 | 20 | AY.25 | 0.00012 |
N | 152 | A152S | Gct | Tct | 20 | 20 | B.1.1.420 | 0.020121 |
N | 152 | A152S | Gct | Tct | 20 | 20 | B.1.177.4 | 0.004221 |
N | 152 | A152S | Gct | Tct | 19 | 19 | AY.29 | 0.0003 |
N | 152 | A152S | Gct | Tct | 19 | 19 | B.1.568 | 0.021111 |
N | 152 | A152V | gCt | gTt | 18 | 18 | AY.20 | 0.0007 |
N | 152 | A152S | Gct | Tct | 17 | 17 | B.1.427 | 0.000858 |
N | 152 | A152V | gCt | gTt | 17 | 17 | B.1.429 | 0.0004 |
N | 152 | A152S | Gct | Tct | 17 | 17 | B.1.554 | 0.07489 |
N | 152 | A152S | Gct | Tct | 17 | 17 | P.2 | 0.003173 |
N | 152 | A152V | gCt | gTt | 16 | 16 | AY.121 | 0.002165 |
N | 152 | A152V | gCt | gTt | 16 | 16 | AY.27 | 0.001036 |
N | 152 | A152V | gCt | gTt | 16 | 16 | AY.39 | 0.000395 |
N | 152 | A152P | Gct | Cct | 16 | 16 | AY.4 | 0.000025 |
N | 152 | A152V | gCt | gTt | 15 | 15 | AY.120 | 0.000558 |
N | 152 | A152V | gCt | gTt | 15 | 15 | AY.9.2 | 0.000551 |
N | 152 | A152S | Gct | Tct | 15 | 15 | B.1.1.37 | 0.002893 |
N | 152 | A152V | gCt | gTt | 15 | 15 | B.1.351 | 0.000446 |
N | 152 | A152S | Gct | Tct | 15 | 15 | Q.3 | 0.002175 |
N | 152 | A152S | Gct | Tct | 14 | 14 | AY.100 | 0.000644 |
N | 152 | A152A | gcT | gcG | 9 | 14 | P.1 | 0.000142 |
N | 152 | A152A | gcT | gcC | 5 | 14 | P.1 | 0.000079 |
N | 152 | A152S | Gct | Tct | 13 | 13 | AY.45 | 0.001582 |
N | 152 | A152S | Gct | Tct | 12 | 12 | AY.6 | 0.000494 |
N | 152 | A152S | Gct | Tct | 12 | 12 | B.1.558 | 0.054795 |
N | 152 | A152S | Gct | Tct | 11 | 11 | AY.34 | 0.001067 |
N | 152 | A152V | gCt | gTt | 11 | 11 | B.1 | 0.000101 |
N | 152 | A152V | gCt | gTt | 11 | 11 | B.1.1 | 0.0002 |
N | 152 | A152S | Gct | Tct | 11 | 11 | B.1.1.214 | 0.00061 |
N | 152 | A152V | gCt | gTt | 11 | 11 | B.1.526 | 0.000259 |
N | 152 | A152T | Gct | Act | 11 | 11 | B.1.526 | 0.000259 |
N | 152 | A152S | Gct | Tct | 11 | 11 | R.1 | 0.00099 |
N | 152 | A152S | Gct | Tct | 10 | 10 | AY.19 | 0.011403 |
N | 152 | A152S | Gct | Tct | 10 | 10 | AY.26 | 0.000283 |
N | 152 | A152S | Gct | Tct | 10 | 10 | AY.3.1 | 0.000853 |
N | 152 | A152S | Gct | Tct | 10 | 10 | B.1.1.317 | 0.004117 |
N | 152 | A152V | gCt | gTt | 9 | 9 | AY.100 | 0.000414 |
N | 152 | A152S | Gct | Tct | 9 | 9 | AY.116 | 0.002581 |
N | 152 | A152S | Gct | Tct | 9 | 9 | AY.86 | 0.007469 |
N | 152 | A152S | Gct | Tct | 9 | 9 | AY.9.2 | 0.000331 |
N | 152 | A152V | gCt | gTt | 9 | 9 | C.37 | 0.001045 |
N | 152 | A152F | GCt | TTt | 8 | 8 | All | 0.000002 |
N | 152 | A152V | gCt | gTt | 8 | 8 | AY.102 | 0.000212 |
N | 152 | A152S | Gct | Tct | 8 | 8 | AY.111 | 0.001465 |
N | 152 | A152S | Gct | Tct | 8 | 8 | AY.117 | 0.000676 |
N | 152 | A152S | Gct | Tct | 8 | 8 | AY.27 | 0.000518 |
N | 152 | A152T | Gct | Act | 8 | 8 | AY.44 | 0.000049 |
N | 152 | A152A | gcT | gcC | 6 | 8 | AY.44 | 0.000037 |
N | 152 | A152A | gcT | gcG | 2 | 8 | AY.44 | 0.000012 |
N | 152 | A152S | Gct | Tct | 8 | 8 | AY.5.3 | 0.002699 |
N | 152 | A152S | Gct | Tct | 8 | 8 | AY.88 | 0.007073 |
N | 152 | A152A | gcT | gcC | 8 | 8 | AY.90 | 0.005476 |
N | 152 | A152S | Gct | Tct | 8 | 8 | AY.92 | 0.002298 |
N | 152 | A152S | Gct | Tct | 8 | 8 | B.1.1.306 | 0.003507 |
N | 152 | A152V | gCt | gTt | 8 | 8 | B.1.1.519 | 0.000318 |
N | 152 | A152S | Gct | Tct | 8 | 8 | B.1.177.81 | 0.001515 |
N | 152 | A152S | Gct | Tct | 8 | 8 | B.1.36 | 0.001167 |
N | 152 | A152S | Gct | Tct | 7 | 7 | A.2.5 | 0.003493 |
N | 152 | A152del | GCT | --- | 7 | 7 | All | 0.000001 |
N | 152 | A152S | Gct | Tct | 7 | 7 | AY.121 | 0.000947 |
N | 152 | A152A | gcT | gcC | 6 | 7 | AY.3 | 0.00006 |
N | 152 | A152A | gcT | gcG | 1 | 7 | AY.3 | 0.00001 |
N | 152 | A152S | Gct | Tct | 7 | 7 | AY.75 | 0.000392 |
N | 152 | A152S | Gct | Tct | 7 | 7 | B.1.177.82 | 0.003341 |
N | 152 | A152S | Gct | Tct | 7 | 7 | P.1.15 | 0.001626 |
N | 152 | A152V | gCt | gTt | 6 | 6 | AY.118 | 0.000376 |
N | 152 | A152S | Gct | Tct | 6 | 6 | AY.120 | 0.000223 |
N | 152 | A152V | gCt | gTt | 6 | 6 | AY.29 | 0.000095 |
N | 152 | A152V | gCt | gTt | 6 | 6 | AY.3.1 | 0.000512 |
N | 152 | A152S | Gct | Tct | 6 | 6 | AY.46.2 | 0.003812 |
N | 152 | A152S | Gct | Tct | 6 | 6 | AY.47 | 0.000187 |
N | 152 | A152A | gcT | gcG | 5 | 6 | AY.75.1 | 0.000902 |
N | 152 | A152A | gcT | gcC | 1 | 6 | AY.75.1 | 0.00018 |
N | 152 | A152S | Gct | Tct | 6 | 6 | AY.98 | 0.000474 |
N | 152 | A152V | gCt | gTt | 6 | 6 | AY.99.2 | 0.000553 |
N | 152 | A152S | Gct | Tct | 6 | 6 | B.1.1.216 | 0.005343 |
N | 152 | A152V | gCt | gTt | 6 | 6 | B.1.1.222 | 0.001224 |
N | 152 | A152V | gCt | gTt | 6 | 6 | B.1.221 | 0.000426 |
N | 152 | A152S | Gct | Tct | 6 | 6 | B.1.466.2 | 0.002347 |
N | 152 | A152S | Gct | Tct | 6 | 6 | B.1.525 | 0.000679 |
N | 152 | A152S | Gct | Tct | 6 | 6 | B.1.596 | 0.000523 |
N | 152 | A152T | Gct | Act | 5 | 6 | B.1.617.2 | 0.000019 |
N | 152 | A152T | GcT | AcG | 1 | 6 | B.1.617.2 | 0.000004 |
N | 152 | A152S | Gct | Tct | 6 | 6 | C.23 | 0.034884 |
N | 152 | A152T | GcT | AcA | 2 | 5 | 0.111111 | |
N | 152 | A152T | Gct | Act | 2 | 5 | 0.111111 | |
N | 152 | A152T | GcT | AcC | 1 | 5 | 0.055556 | |
N | 152 | A152del1 | Gct | -ct | 4 | 5 | All | 0.000001 |
N | 152 | A152del1 | gcT | gc- | 1 | 5 | All | 0 |
N | 152 | A152A | gcT | gcC | 3 | 5 | AY.103 | 0.000019 |
N | 152 | A152A | gcT | gcG | 2 | 5 | AY.103 | 0.000012 |
N | 152 | A152S | Gct | Tct | 5 | 5 | AY.113 | 0.000712 |
N | 152 | A152S | Gct | Tct | 5 | 5 | AY.118 | 0.000313 |
N | 152 | A152V | gCt | gTt | 5 | 5 | AY.119 | 0.000177 |
N | 152 | A152A | gcT | gcC | 5 | 5 | AY.48 | 0.002326 |
N | 152 | A152S | Gct | Tct | 5 | 5 | AY.61 | 0.000524 |
N | 152 | A152S | Gct | Tct | 5 | 5 | AY.74 | 0.000578 |
N | 152 | A152S | Gct | Tct | 5 | 5 | B.1.258 | 0.000333 |
N | 152 | A152A | gcT | gcC | 5 | 5 | B.1.36 | 0.00073 |
N | 152 | A152S | Gct | Tct | 5 | 5 | B.1.36.17 | 0.00247 |
N | 152 | A152S | Gct | Tct | 5 | 5 | B.1.550 | 0.068493 |
N | 152 | A152V | gCt | gTt | 5 | 5 | B.1.637 | 0.000365 |
N | 152 | A152S | Gct | Tct | 5 | 5 | C.37 | 0.00058 |
N | 152 | A152S | Gct | Tct | 5 | 5 | Q.1 | 0.000632 |
N | 152 | A152A | gcT | gcA | 2 | 4 | 0.111111 | |
N | 152 | A152A | gcT | gcC | 2 | 4 | 0.111111 | |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.101 | 0.001962 |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.104 | 0.007937 |
N | 152 | A152A | gcT | gcC | 4 | 4 | AY.110 | 0.000451 |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.120.1 | 0.001284 |
N | 152 | A152T | Gct | Act | 4 | 4 | AY.20 | 0.000155 |
N | 152 | A152A | gcT | gcC | 4 | 4 | AY.20 | 0.000155 |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.23 | 0.000279 |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.26 | 0.000113 |
N | 152 | A152G | gCt | gGt | 4 | 4 | AY.34 | 0.000388 |
N | 152 | A152G | gCt | gGt | 4 | 4 | AY.4.2 | 0.000087 |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.5 | 0.000083 |
N | 152 | A152F | GCt | TTt | 4 | 4 | AY.61 | 0.000419 |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.64 | 0.002381 |
N | 152 | A152S | Gct | Tct | 4 | 4 | AY.84 | 0.00175 |
N | 152 | A152S | Gct | Tct | 4 | 4 | AY.87 | 0.003331 |
N | 152 | A152V | gCt | gTt | 4 | 4 | AY.9 | 0.00027 |
N | 152 | A152S | Gct | Tct | 4 | 4 | B.1.1.174 | 0.013514 |
N | 152 | A152V | gCt | gTt | 4 | 4 | B.1.1.416 | 0.00362 |
N | 152 | A152V | gCt | gTt | 4 | 4 | B.1.1.486 | 0.006309 |
N | 152 | A152G | gCt | gGt | 4 | 4 | B.1.1.7 | 0.000004 |
N | 152 | A152P | Gct | Cct | 4 | 4 | B.1.1.7 | 0.000004 |
N | 152 | A152S | Gct | Tct | 4 | 4 | B.1.139 | 0.002933 |
N | 152 | A152S | Gct | Tct | 4 | 4 | B.1.195 | 0.020101 |
N | 152 | A152T | Gct | Act | 4 | 4 | B.1.2 | 0.000035 |
N | 152 | A152S | Gct | Tct | 4 | 4 | B.1.234 | 0.000528 |
N | 152 | A152S | Gct | Tct | 4 | 4 | B.1.36.19 | 0.037037 |
N | 152 | A152S | Gct | Tct | 4 | 4 | B.1.36.8 | 0.004 |
N | 152 | A152A | gcT | gcG | 4 | 4 | B.1.427 | 0.000202 |
N | 152 | A152V | gCt | gTt | 4 | 4 | B.1.427 | 0.000202 |
N | 152 | A152S | Gct | Tct | 4 | 4 | B.1.588 | 0.00364 |
N | 152 | A152V | gCt | gTt | 4 | 4 | B.1.617.1 | 0.000516 |
N | 152 | A152S | Gct | Tct | 4 | 4 | Q.8 | 0.00066 |
N | 152 | A152G | gCT | gGA | 1 | 3 | 0.055556 | |
N | 152 | A152G | gCT | gGC | 1 | 3 | 0.055556 | |
N | 152 | A152G | gCt | gGt | 1 | 3 | 0.055556 | |
N | 152 | A152S | Gct | Tct | 3 | 3 | A.1 | 0.000846 |
N | 152 | A152S | Gct | Tct | 3 | 3 | AY.110 | 0.000338 |
N | 152 | A152A | gcT | gcG | 3 | 3 | AY.118 | 0.000188 |
N | 152 | A152T | Gct | Act | 3 | 3 | AY.25 | 0.000018 |
N | 152 | A152A | gcT | gcG | 2 | 3 | AY.25 | 0.000012 |
N | 152 | A152A | gcT | gcC | 1 | 3 | AY.25 | 0.000006 |
N | 152 | A152V | gCt | gTt | 3 | 3 | AY.30 | 0.001187 |
N | 152 | A152S | Gct | Tct | 3 | 3 | AY.38 | 0.001498 |
N | 152 | A152T | Gct | Act | 3 | 3 | AY.39 | 0.000074 |
N | 152 | A152S | Gct | Tct | 3 | 3 | AY.40 | 0.002893 |
N | 152 | A152S | Gct | Tct | 3 | 3 | AY.41 | 0.000882 |
N | 152 | A152P | Gct | Cct | 3 | 3 | AY.43 | 0.000013 |
N | 152 | A152V | gCt | gTt | 3 | 3 | AY.46 | 0.000312 |
N | 152 | A152V | gCt | gTt | 3 | 3 | AY.6 | 0.000123 |
N | 152 | A152S | Gct | Tct | 3 | 3 | AY.60 | 0.002814 |
N | 152 | A152V | gCt | gTt | 3 | 3 | AY.68 | 0.000821 |
N | 152 | A152V | gCt | gTt | 3 | 3 | AY.75 | 0.000168 |
N | 152 | A152D | gCt | gAt | 3 | 3 | B.1 | 0.000027 |
N | 152 | A152A | gcT | gcC | 2 | 3 | B.1 | 0.000018 |
N | 152 | A152A | gcT | gcG | 1 | 3 | B.1 | 0.000009 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.1.1 | 0.00098 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.1.134 | 0.034091 |
N | 152 | A152A | gcT | gcC | 3 | 3 | B.1.1.216 | 0.002671 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.1.326 | 0.005282 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.1.50 | 0.002037 |
N | 152 | A152A | gcT | gcG | 3 | 3 | B.1.177.16 | 0.001993 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.177.21 | 0.000229 |
N | 152 | A152V | gCt | gTt | 3 | 3 | B.1.177.32 | 0.004049 |
N | 152 | A152V | gCt | gTt | 3 | 3 | B.1.177.4 | 0.000633 |
N | 152 | A152T | Gct | Act | 3 | 3 | B.1.177.72 | 0.010169 |
N | 152 | A152V | gCt | gTt | 3 | 3 | B.1.177.77 | 0.002179 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.177.79 | 0.007026 |
N | 152 | A152A | gcT | gcC | 2 | 3 | B.1.2 | 0.000018 |
N | 152 | A152A | gcT | gcG | 1 | 3 | B.1.2 | 0.000009 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.243 | 0.000209 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.258.21 | 0.023256 |
N | 152 | A152V | gCt | gTt | 3 | 3 | B.1.361 | 0.003866 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.369 | 0.000856 |
N | 152 | A152D | gCt | gAt | 3 | 3 | B.1.617.2 | 0.000011 |
N | 152 | A152S | Gct | Tct | 3 | 3 | B.1.621 | 0.000266 |
N | 152 | A152S | Gct | Tct | 3 | 3 | D.2 | 0.000225 |
N | 152 | A152V | gCt | gTt | 3 | 3 | P.1 | 0.000047 |
N | 152 | A152S | Gct | Tct | 3 | 3 | P.1.12 | 0.001452 |
N | 152 | A152V | gCt | gTt | 3 | 3 | P.1.14 | 0.000143 |
N | 152 | A152S | Gct | Tct | 3 | 3 | P.1.14 | 0.000143 |
N | 152 | A152V | gCt | gTt | 3 | 3 | P.2 | 0.00056 |
N | 152 | A152S | Gct | Tct | 3 | 3 | Q.2 | 0.00184 |
N | 152 | A152V | gCt | gTt | 3 | 3 | Q.4 | 0.001364 |
N | 152 | A152S | GCT | AGC | 1 | 2 | 0.055556 | |
N | 152 | A152S | GCt | AGt | 1 | 2 | 0.055556 | |
N | 152 | A152E | gCT | gAA | 1 | 2 | All | 0 |
N | 152 | A152E | gCT | gAG | 1 | 2 | All | 0 |
N | 152 | A152K | GCT | AAG | 1 | 2 | All | 0 |
N | 152 | A152K | GCT | AAA | 1 | 2 | All | 0 |
N | 152 | A152T | Gct | Act | 2 | 2 | AY.102 | 0.000053 |
N | 152 | A152T | Gct | Act | 2 | 2 | AY.103 | 0.000012 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.105 | 0.001286 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.106 | 0.00067 |
N | 152 | A152A | gcT | gcC | 2 | 2 | AY.117 | 0.000169 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.12 | 0.000632 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.120.1 | 0.000642 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.120.2 | 0.002571 |
N | 152 | A152T | Gct | Act | 2 | 2 | AY.121 | 0.000271 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.14 | 0.000176 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.23 | 0.000139 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.32 | 0.001065 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.34 | 0.000194 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.35 | 0.000466 |
N | 152 | A152A | gcT | gcC | 2 | 2 | AY.36 | 0.000296 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.37 | 0.000632 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.39.1 | 0.000079 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.39.1 | 0.000079 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.4.2.1 | 0.000298 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.4.5 | 0.000215 |
N | 152 | A152G | gCt | gGt | 2 | 2 | AY.43 | 0.000009 |
N | 152 | A152A | gcT | gcC | 2 | 2 | AY.43 | 0.000009 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.46.1 | 0.002053 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.47 | 0.000062 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.51 | 0.001818 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.53 | 0.000575 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.59 | 0.001059 |
N | 152 | A152A | gcT | gcG | 2 | 2 | AY.61 | 0.00021 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.62 | 0.000871 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.68 | 0.000547 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.70 | 0.000417 |
N | 152 | A152V | gCt | gTt | 2 | 2 | AY.74 | 0.000231 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.75.1 | 0.000361 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.77 | 0.002255 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.91 | 0.001461 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.95 | 0.001522 |
N | 152 | A152A | gcT | gcC | 2 | 2 | AY.98.1 | 0.000097 |
N | 152 | A152S | Gct | Tct | 2 | 2 | AY.99.2 | 0.000184 |
N | 152 | A152P | Gct | Cct | 2 | 2 | B.1 | 0.000018 |
N | 152 | A152A | gcT | gcG | 1 | 2 | B.1.1 | 0.000018 |
N | 152 | A152A | gcT | gcA | 1 | 2 | B.1.1 | 0.000018 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.1.28 | 0.000622 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.1.294 | 0.002532 |
N | 152 | A152T | Gct | Act | 2 | 2 | B.1.1.306 | 0.000877 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.1.318 | 0.000604 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.1.37 | 0.000386 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.1.41 | 0.012658 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.1.420 | 0.002012 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.1.70 | 0.000682 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.128 | 0.001271 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.146 | 0.008475 |
N | 152 | A152A | gcT | gcG | 2 | 2 | B.1.177.17 | 0.001642 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.177.44 | 0.001038 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.177.57 | 0.000562 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.177.6 | 0.001953 |
N | 152 | A152T | Gct | Act | 2 | 2 | B.1.177.62 | 0.002384 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.177.7 | 0.00033 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.177.73 | 0.001133 |
N | 152 | A152A | gcT | gcG | 1 | 2 | B.1.221 | 0.000071 |
N | 152 | A152A | gcT | gcC | 1 | 2 | B.1.221 | 0.000071 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.243 | 0.000139 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.3 | 0.005236 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.349 | 0.00143 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.351.2 | 0.000605 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.351.3 | 0.001753 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.36.16 | 0.002849 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.36.31 | 0.003503 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.366 | 0.009756 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.367 | 0.001585 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.400 | 0.000858 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.404 | 0.002604 |
N | 152 | A152A | gcT | gcC | 2 | 2 | B.1.466 | 0.046512 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.525 | 0.000226 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.575 | 0.000607 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.575 | 0.000607 |
N | 152 | A152D | gCt | gAt | 2 | 2 | B.1.596 | 0.000174 |
N | 152 | A152V | gCt | gTt | 2 | 2 | B.1.599 | 0.007299 |
N | 152 | A152S | Gct | Tct | 2 | 2 | B.1.617.1 | 0.000258 |
N | 152 | A152S | Gct | Tct | 2 | 2 | C.16 | 0.002121 |
N | 152 | A152S | Gct | Tct | 2 | 2 | C.36.3 | 0.001134 |
N | 152 | A152A | gcT | gcA | 1 | 2 | C.37 | 0.000116 |
N | 152 | A152A | gcT | gcC | 1 | 2 | C.37 | 0.000116 |
N | 152 | A152S | Gct | Tct | 2 | 2 | C.9 | 0.060606 |
N | 152 | A152P | Gct | Cct | 2 | 2 | D.2 | 0.00015 |
N | 152 | A152V | gCt | gTt | 2 | 2 | D.2 | 0.00015 |
N | 152 | A152T | Gct | Act | 2 | 2 | P.1 | 0.000032 |
N | 152 | A152V | gCt | gTt | 2 | 2 | P.1.4 | 0.001953 |
N | 152 | A152V | gCt | gTt | 2 | 2 | P.1.7 | 0.000639 |
N | 152 | A152V | gCt | gTt | 2 | 2 | Q.1 | 0.000253 |
N | 152 | A152S | Gct | Tct | 2 | 2 | Q.7 | 0.002222 |
N | 152 | A152V | gCt | gTt | 2 | 2 | Q.8 | 0.00033 |
N | 152 | A152K | GCT | AAA | 1 | 1 | 0.055556 | |
N | 152 | A152E | gCT | gAA | 1 | 1 | 0.055556 | |
N | 152 | A152N | GCt | AAt | 1 | 1 | 0.055556 | |
N | 152 | A152R | GCT | AGA | 1 | 1 | 0.055556 | |
N | 152 | A152D | gCt | gAt | 1 | 1 | 0.055556 | |
N | 152 | A152S | Gct | Tct | 1 | 1 | A.2 | 0.000662 |
N | 152 | A152S | Gct | Tct | 1 | 1 | A.2.4 | 0.003367 |
N | 152 | A152S | Gct | Tct | 1 | 1 | A.30 | 0.142857 |
N | 152 | A152N | GCt | AAt | 1 | 1 | All | 0 |
N | 152 | A152L | GCt | CTt | 1 | 1 | All | 0 |
N | 152 | A152R | GCT | AGA | 1 | 1 | All | 0 |
N | 152 | A152del2 | GCT | A-- | 1 | 1 | All | 0 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AU.2 | 0.002421 |
N | 152 | A152D | gCt | gAt | 1 | 1 | AY.100 | 0.000046 |
N | 152 | A152F | GCt | TTt | 1 | 1 | AY.102 | 0.000027 |
N | 152 | A152P | Gct | Cct | 1 | 1 | AY.102 | 0.000027 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.102 | 0.000027 |
N | 152 | A152P | Gct | Cct | 1 | 1 | AY.103 | 0.000006 |
N | 152 | A152D | gCt | gAt | 1 | 1 | AY.103 | 0.000006 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.104 | 0.001984 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.105 | 0.000643 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.107 | 0.000466 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.108 | 0.001103 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.109 | 0.00074 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.11 | 0.001339 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.110 | 0.000113 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.110 | 0.000113 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.111 | 0.000183 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.113 | 0.000142 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.114 | 0.000231 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.114 | 0.000231 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.117 | 0.000085 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.117 | 0.000085 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.118 | 0.000063 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.120 | 0.000037 |
N | 152 | A152D | gCt | gAt | 1 | 1 | AY.120 | 0.000037 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
N | 152 | A152P | Gct | Cct | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.13 | 0.000161 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.16 | 0.00038 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.16.1 | 0.00047 |
N | 152 | A152A | gcT | gcG | 1 | 1 | AY.16.1 | 0.00047 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.17 | 0.008197 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.2 | 0.000356 |
N | 152 | A152P | Gct | Cct | 1 | 1 | AY.25 | 0.000006 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.3 | 0.00001 |
N | 152 | A152A | gcT | gcG | 1 | 1 | AY.3.1 | 0.000085 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.32 | 0.000532 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.33 | 0.000067 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.35 | 0.000233 |
N | 152 | A152A | gcT | gcG | 1 | 1 | AY.37 | 0.000316 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.39 | 0.000025 |
N | 152 | A152F | GCt | TTt | 1 | 1 | AY.39 | 0.000025 |
N | 152 | A152G | gCt | gGt | 1 | 1 | AY.39 | 0.000025 |
N | 152 | A152A | gcT | gcG | 1 | 1 | AY.39.1 | 0.00004 |
N | 152 | A152del | GCT | --- | 1 | 1 | AY.4 | 0.000002 |
N | 152 | A152G | gCt | gGt | 1 | 1 | AY.4 | 0.000002 |
N | 152 | A152D | gCt | gAt | 1 | 1 | AY.4 | 0.000002 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.4.1 | 0.000737 |
N | 152 | A152F | GCt | TTt | 1 | 1 | AY.4.2 | 0.000022 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.4.4 | 0.000409 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.4.5 | 0.000107 |
N | 152 | A152A | gcT | gcG | 1 | 1 | AY.4.5 | 0.000107 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.41 | 0.000294 |
N | 152 | A152del1 | Gct | -ct | 1 | 1 | AY.44 | 0.000006 |
N | 152 | A152G | gCt | gGt | 1 | 1 | AY.44 | 0.000006 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.45 | 0.000122 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.46 | 0.000104 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.46.3 | 0.000934 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.46.4 | 0.000165 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.46.5 | 0.000198 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
N | 152 | A152P | Gct | Cct | 1 | 1 | AY.46.6 | 0.000072 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.48 | 0.000465 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.5.2 | 0.002463 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.5.3 | 0.000337 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.53 | 0.000288 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.53 | 0.000288 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.54 | 0.000095 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.55 | 0.000917 |
N | 152 | A152A | gcT | gcC | 1 | 1 | AY.56 | 0.001605 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.56 | 0.001605 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.57 | 0.000656 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.58 | 0.000907 |
N | 152 | A152T | Gct | Act | 1 | 1 | AY.6 | 0.000041 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.65 | 0.000533 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.7 | 0.000196 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.71 | 0.000475 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.73 | 0.000665 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.73 | 0.000665 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.76 | 0.004831 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.78 | 0.001541 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.82 | 0.001357 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.83 | 0.001724 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.83 | 0.001724 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.84 | 0.000437 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.89 | 0.004902 |
N | 152 | A152P | Gct | Cct | 1 | 1 | AY.9 | 0.000068 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.93 | 0.000273 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.97 | 0.001701 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.98 | 0.000079 |
N | 152 | A152S | Gct | Tct | 1 | 1 | AY.99 | 0.001049 |
N | 152 | A152V | gCt | gTt | 1 | 1 | AY.99 | 0.001049 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B | 0.000128 |
N | 152 | A152A | gcT | gcG | 1 | 1 | B | 0.000128 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B | 0.000128 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
N | 152 | A152del2 | GCT | A-- | 1 | 1 | B.1 | 0.000009 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.1.164 | 0.005155 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.222 | 0.000204 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.1.25 | 0.000569 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.253 | 0.002506 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.1.288 | 0.001916 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.1.289 | 0.002083 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.297 | 0.002237 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.298 | 0.000862 |
N | 152 | A152del1 | Gct | -ct | 1 | 1 | B.1.1.306 | 0.000438 |
N | 152 | A152del1 | gcT | gc- | 1 | 1 | B.1.1.315 | 0.008475 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.1.316 | 0.000925 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.1.33 | 0.000421 |
N | 152 | A152A | gcT | gcG | 1 | 1 | B.1.1.33 | 0.000421 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.374 | 0.002375 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.1.389 | 0.006061 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.397 | 0.002252 |
N | 152 | A152del | GCT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.432 | 0.001266 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.448 | 0.002033 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.1.464 | 0.001473 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.525 | 0.005464 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.1.526 | 0.003546 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.63 | 0.000386 |
N | 152 | A152del | GCT | --- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.1.70 | 0.000341 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.71 | 0.006061 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.1.90 | 0.1 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.111 | 0.001175 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.149 | 0.003425 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.157 | 0.002985 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.160 | 0.000031 |
N | 152 | A152D | gCt | gAt | 1 | 1 | B.1.160.29 | 0.004219 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.177 | 0.000013 |
N | 152 | A152del | GCT | --- | 1 | 1 | B.1.177 | 0.000013 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.177.12 | 0.000152 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.177.15 | 0.000631 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.177.16 | 0.000664 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.177.21 | 0.000076 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.177.28 | 0.007407 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.177.32 | 0.00135 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.177.33 | 0.001645 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.177.41 | 0.0025 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.177.45 | 0.000381 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.177.52 | 0.001757 |
N | 152 | A152F | GCt | TTt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.177.63 | 0.002703 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.177.76 | 0.002494 |
N | 152 | A152A | gcT | gcG | 1 | 1 | B.1.177.81 | 0.000189 |
N | 152 | A152del | GCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.206 | 0.000816 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.212 | 0.016667 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.232 | 0.000537 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.234 | 0.000132 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.258 | 0.000067 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.258.17 | 0.000104 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.260 | 0.003344 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.260 | 0.003344 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.306 | 0.005714 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.311 | 0.000275 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.318 | 0.038462 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.324 | 0.001605 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.329 | 0.000608 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.330 | 0.028571 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.344 | 0.008197 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.351 | 0.00003 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.351.2 | 0.000303 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.351.2 | 0.000303 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.36 | 0.000146 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.36.1 | 0.00114 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.36.16 | 0.001425 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.36.17 | 0.000494 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.36.18 | 0.00042 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.36.8 | 0.001 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.36.9 | 0.003215 |
N | 152 | A152A | gcT | gcG | 1 | 1 | B.1.404 | 0.001302 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.416 | 0.001269 |
N | 152 | A152del | GCT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.429 | 0.000024 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.436 | 0.001029 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.453 | 0.003236 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.466.2 | 0.000391 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.470 | 0.001404 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.495 | 0.009091 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.497 | 0.000315 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.499 | 0.00105 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.517 | 0.000427 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.540 | 0.009709 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.551 | 0.00129 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.556 | 0.007519 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.561 | 0.000397 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.561 | 0.000397 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.577 | 0.000687 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.582 | 0.000491 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.582 | 0.000491 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.588 | 0.00091 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.595 | 0.000261 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.596 | 0.000087 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.1.596 | 0.000087 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.597 | 0.00463 |
N | 152 | A152V | gCt | gTt | 1 | 1 | B.1.612 | 0.002653 |
N | 152 | A152G | gCt | gGt | 1 | 1 | B.1.617.2 | 0.000004 |
N | 152 | A152del1 | Gct | -ct | 1 | 1 | B.1.617.2 | 0.000004 |
N | 152 | A152P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
N | 152 | A152K | GCT | AAG | 1 | 1 | B.1.617.2 | 0.000004 |
N | 152 | A152E | gCT | gAG | 1 | 1 | B.1.617.2 | 0.000004 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.618 | 0.004032 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.620 | 0.000946 |
N | 152 | A152T | Gct | Act | 1 | 1 | B.1.621 | 0.000089 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.628 | 0.000352 |
N | 152 | A152P | Gct | Cct | 1 | 1 | B.1.637 | 0.000073 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.1.637 | 0.000073 |
N | 152 | A152S | Gct | Tct | 1 | 1 | B.6.6 | 0.000889 |
N | 152 | A152A | gcT | gcC | 1 | 1 | B.6.6 | 0.000889 |
N | 152 | A152V | gCt | gTt | 1 | 1 | C.16 | 0.00106 |
N | 152 | A152S | Gct | Tct | 1 | 1 | C.30 | 0.001727 |
N | 152 | A152V | gCt | gTt | 1 | 1 | C.35 | 0.000774 |
N | 152 | A152S | Gct | Tct | 1 | 1 | C.35 | 0.000774 |
N | 152 | A152S | Gct | Tct | 1 | 1 | C.36 | 0.000911 |
N | 152 | A152A | gcT | gcA | 1 | 1 | C.37.1 | 0.002618 |
N | 152 | A152del1 | Gct | -ct | 1 | 1 | D.2 | 0.000075 |
N | 152 | A152del | GCT | --- | 1 | 1 | P.1 | 0.000016 |
N | 152 | A152V | gCt | gTt | 1 | 1 | P.1.15 | 0.000232 |
N | 152 | A152L | GCt | CTt | 1 | 1 | P.1.16 | 0.000374 |
N | 152 | A152V | gCt | gTt | 1 | 1 | P.1.17 | 0.000162 |
N | 152 | A152S | Gct | Tct | 1 | 1 | P.1.7 | 0.000319 |
N | 152 | A152A | gcT | gcG | 1 | 1 | P.3 | 0.001595 |
N | 152 | A152A | gcT | gcC | 1 | 1 | P.6 | 0.003145 |
N | 152 | A152T | Gct | Act | 1 | 1 | Q.1 | 0.000126 |
N | 152 | A152T | Gct | Act | 1 | 1 | Q.8 | 0.000165 |
N | 152 | A152V | gCt | gTt | 1 | 1 | R.1 | 0.00009 |
N | 152 | A152S | Gct | Tct | 1 | 1 | W.4 | 0.001351 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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