CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 151 | P151L | nonsyn | cCt | cTt | 16417 | 16416 | 0.999939 | 28724-28726 | |
N | 151 | P151L | nonsyn | cCT | cTA | 16417 | 1 | 0.0000609125 | 28724-28726 | |
N | 151 | P151S | nonsyn | Cct | Tct | 5029 | 5028 | 0.999801 | 28724-28726 | |
N | 151 | P151S | nonsyn | CcT | TcG | 5029 | 1 | 0.000198847 | 28724-28726 | |
N | 151 | P151P | syn | ccT | ccA | 530 | 357 | 0.673585 | 28724-28726 | |
N | 151 | P151P | syn | ccT | ccC | 530 | 159 | 0.3 | 28724-28726 | |
N | 151 | P151P | syn | ccT | ccG | 530 | 14 | 0.0264151 | 28724-28726 | |
N | 151 | P151H | nonsyn | cCt | cAt | 104 | 104 | 1 | 28724-28726 | |
N | 151 | P151T | nonsyn | Cct | Act | 32 | 30 | 0.9375 | 28724-28726 | |
N | 151 | P151T | nonsyn | CcT | AcA | 32 | 1 | 0.03125 | 28724-28726 | |
N | 151 | P151T | nonsyn | CcT | AcC | 32 | 1 | 0.03125 | 28724-28726 | |
N | 151 | P151F | nonsyn | CCt | TTt | 24 | 24 | 1 | 28724-28726 | |
N | 151 | P151A | nonsyn | Cct | Gct | 24 | 23 | 0.958333 | 28724-28726 | |
N | 151 | P151A | nonsyn | CcT | GcG | 24 | 1 | 0.0416667 | 28724-28726 | |
N | 151 | P151R | nonsyn | cCt | cGt | 7 | 7 | 1 | 28724-28726 | |
N | 151 | P151del | del | CCT | --- | 7 | 7 | 1 | 28724-28726 | |
N | 151 | P151G | nonsyn | CCt | GGt | 2 | 1 | 0.5 | 28724-28726 | |
N | 151 | P151G | nonsyn | CCT | GGG | 2 | 1 | 0.5 | 28724-28726 | |
N | 151 | P151K | nonsyn | CCT | AAA | 1 | 1 | 1 | 28724-28726 | |
N | 151 | P151del1 | del | Cct | -ct | 1 | 1 | 1 | 28724-28726 | |
N | 151 | P151del2 | del | cCT | c-- | 1 | 1 | 1 | 28724-28726 | |
N | 151 | P151Q | nonsyn | cCT | cAA | 1 | 1 | 1 | 28724-28726 | |
N | 151 | P151N | nonsyn | CCt | AAt | 1 | 1 | 1 | 28724-28726 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 151 | P151L | cCt | cTt | 16416 | 16417 | All | 0.00314 |
N | 151 | P151L | cCT | cTA | 1 | 16417 | All | 0 |
N | 151 | P151L | cCt | cTt | 9285 | 9285 | B.1.1.284 | 0.997208 |
N | 151 | P151S | Cct | Tct | 5028 | 5029 | All | 0.000962 |
N | 151 | P151S | CcT | TcG | 1 | 5029 | All | 0 |
N | 151 | P151L | cCt | cTt | 3088 | 3088 | B.1.1.7 | 0.002764 |
N | 151 | P151S | Cct | Tct | 1453 | 1453 | B.1.1.7 | 0.001301 |
N | 151 | P151L | cCt | cTt | 1131 | 1131 | B.1.617.2 | 0.004259 |
N | 151 | P151S | Cct | Tct | 1070 | 1070 | AY.88 | 0.946065 |
N | 151 | P151P | ccT | ccA | 357 | 530 | All | 0.000068 |
N | 151 | P151P | ccT | ccC | 159 | 530 | All | 0.00003 |
N | 151 | P151P | ccT | ccG | 14 | 530 | All | 0.000003 |
N | 151 | P151L | cCt | cTt | 437 | 437 | AY.4 | 0.00068 |
N | 151 | P151S | Cct | Tct | 432 | 432 | AY.4 | 0.000672 |
N | 151 | P151L | cCt | cTt | 421 | 421 | AY.98 | 0.033257 |
N | 151 | P151P | ccT | ccA | 248 | 252 | AY.43 | 0.001099 |
N | 151 | P151P | ccT | ccC | 3 | 252 | AY.43 | 0.000013 |
N | 151 | P151P | ccT | ccG | 1 | 252 | AY.43 | 0.000004 |
N | 151 | P151L | cCt | cTt | 192 | 192 | AY.103 | 0.001192 |
N | 151 | P151S | Cct | Tct | 188 | 189 | B.1.617.2 | 0.000708 |
N | 151 | P151S | CcT | TcG | 1 | 189 | B.1.617.2 | 0.000004 |
N | 151 | P151S | Cct | Tct | 177 | 177 | P.2 | 0.033035 |
N | 151 | P151L | cCt | cTt | 171 | 171 | B.1.1 | 0.003102 |
N | 151 | P151L | cCt | cTt | 165 | 166 | AY.44 | 0.001004 |
N | 151 | P151L | cCT | cTA | 1 | 166 | AY.44 | 0.000006 |
N | 151 | P151S | Cct | Tct | 144 | 144 | B.1.177 | 0.001896 |
N | 151 | P151L | cCt | cTt | 140 | 140 | AY.39.1 | 0.005546 |
N | 151 | P151S | Cct | Tct | 132 | 132 | AY.29 | 0.002082 |
N | 151 | P151S | Cct | Tct | 114 | 114 | AY.25 | 0.000686 |
N | 151 | P151S | Cct | Tct | 108 | 108 | AY.103 | 0.000671 |
N | 151 | P151H | cCt | cAt | 104 | 104 | All | 0.00002 |
N | 151 | P151L | cCt | cTt | 82 | 82 | AY.120 | 0.003049 |
N | 151 | P151L | cCt | cTt | 80 | 80 | AY.20 | 0.003109 |
N | 151 | P151S | Cct | Tct | 80 | 80 | AY.43 | 0.000354 |
N | 151 | P151L | cCt | cTt | 77 | 77 | AY.43 | 0.000341 |
N | 151 | P151P | ccT | ccA | 70 | 72 | AY.8 | 0.042424 |
N | 151 | P151P | ccT | ccC | 2 | 72 | AY.8 | 0.001212 |
N | 151 | P151L | cCt | cTt | 71 | 71 | B.1.177 | 0.000935 |
N | 151 | P151L | cCt | cTt | 70 | 70 | AY.25 | 0.000421 |
N | 151 | P151S | Cct | Tct | 69 | 69 | AY.44 | 0.00042 |
N | 151 | P151P | ccT | ccC | 67 | 69 | B.1.1.7 | 0.00006 |
N | 151 | P151P | ccT | ccA | 2 | 69 | B.1.1.7 | 0.000002 |
N | 151 | P151S | Cct | Tct | 67 | 67 | AY.42 | 0.002695 |
N | 151 | P151L | cCt | cTt | 58 | 58 | D.2 | 0.004352 |
N | 151 | P151S | Cct | Tct | 55 | 55 | B.1.429 | 0.001294 |
N | 151 | P151L | cCt | cTt | 52 | 52 | AY.3 | 0.000517 |
N | 151 | P151S | Cct | Tct | 49 | 49 | AY.119 | 0.00173 |
N | 151 | P151S | Cct | Tct | 46 | 46 | AY.4.2 | 0.000998 |
N | 151 | P151L | cCt | cTt | 35 | 35 | B.1 | 0.000321 |
N | 151 | P151S | Cct | Tct | 35 | 35 | B.1 | 0.000321 |
N | 151 | P151S | Cct | Tct | 33 | 33 | AY.5 | 0.000681 |
N | 151 | P151T | Cct | Act | 30 | 32 | All | 0.000006 |
N | 151 | P151T | CcT | AcA | 1 | 32 | All | 0 |
N | 151 | P151T | CcT | AcC | 1 | 32 | All | 0 |
N | 151 | P151S | Cct | Tct | 31 | 31 | B.1.177.81 | 0.005869 |
N | 151 | P151S | Cct | Tct | 31 | 31 | B.1.258.17 | 0.003223 |
N | 151 | P151L | cCt | cTt | 30 | 30 | B.1.1.160 | 0.714286 |
N | 151 | P151S | Cct | Tct | 29 | 29 | AY.3 | 0.000288 |
N | 151 | P151L | cCt | cTt | 28 | 28 | AY.5 | 0.000578 |
N | 151 | P151S | Cct | Tct | 28 | 28 | AY.6 | 0.001152 |
N | 151 | P151L | cCt | cTt | 28 | 28 | B.1.351 | 0.000832 |
N | 151 | P151L | cCt | cTt | 28 | 28 | B.1.427 | 0.001414 |
N | 151 | P151L | cCt | cTt | 28 | 28 | B.23 | 0.081871 |
N | 151 | P151L | cCt | cTt | 27 | 27 | B.1.2 | 0.000238 |
N | 151 | P151S | Cct | Tct | 26 | 26 | AY.10 | 0.013778 |
N | 151 | P151S | Cct | Tct | 26 | 26 | B.1.1 | 0.000472 |
N | 151 | P151L | cCt | cTt | 25 | 25 | AY.4.2 | 0.000542 |
N | 151 | P151S | Cct | Tct | 25 | 25 | AY.9.1 | 0.002093 |
N | 151 | P151F | CCt | TTt | 24 | 24 | All | 0.000005 |
N | 151 | P151A | Cct | Gct | 23 | 24 | All | 0.000004 |
N | 151 | P151A | CcT | GcG | 1 | 24 | All | 0 |
N | 151 | P151L | cCt | cTt | 24 | 24 | AY.46.6 | 0.001733 |
N | 151 | P151L | cCt | cTt | 24 | 24 | B.1.1.294 | 0.03038 |
N | 151 | P151L | cCt | cTt | 23 | 23 | AY.23 | 0.001604 |
N | 151 | P151F | CCt | TTt | 22 | 22 | B.1.1.284 | 0.002363 |
N | 151 | P151S | Cct | Tct | 22 | 22 | P.1 | 0.000347 |
N | 151 | P151L | cCt | cTt | 21 | 21 | B.1.429 | 0.000494 |
N | 151 | P151L | cCt | cTt | 20 | 20 | AY.102 | 0.00053 |
N | 151 | P151S | Cct | Tct | 20 | 20 | B.1.2 | 0.000176 |
N | 151 | P151S | Cct | Tct | 19 | 19 | AY.118 | 0.00119 |
N | 151 | P151S | Cct | Tct | 19 | 19 | AY.26 | 0.000538 |
N | 151 | P151L | cCt | cTt | 19 | 19 | B.1.1.519 | 0.000755 |
N | 151 | P151S | Cct | Tct | 18 | 18 | B.1.177.86 | 0.003302 |
N | 151 | P151L | cCt | cTt | 18 | 18 | P.1 | 0.000284 |
N | 151 | P151L | cCt | cTt | 17 | 17 | B.1.369 | 0.004849 |
N | 151 | P151L | cCt | cTt | 16 | 16 | AY.29 | 0.000252 |
N | 151 | P151L | cCt | cTt | 16 | 16 | AY.39 | 0.000395 |
N | 151 | P151S | Cct | Tct | 16 | 16 | AY.98.1 | 0.000775 |
N | 151 | P151S | Cct | Tct | 16 | 16 | Q.1 | 0.002021 |
N | 151 | P151S | Cct | Tct | 14 | 14 | AY.41 | 0.004115 |
N | 151 | P151S | Cct | Tct | 14 | 14 | B.1.160 | 0.000437 |
N | 151 | P151S | Cct | Tct | 14 | 14 | B.1.427 | 0.000707 |
N | 151 | P151L | cCt | cTt | 14 | 14 | B.1.597 | 0.064815 |
N | 151 | P151S | Cct | Tct | 14 | 14 | C.37 | 0.001625 |
N | 151 | P151S | Cct | Tct | 13 | 13 | B.1.526 | 0.000306 |
N | 151 | P151A | Cct | Gct | 12 | 12 | B.1.1.7 | 0.000011 |
N | 151 | P151L | cCt | cTt | 12 | 12 | B.1.526 | 0.000282 |
N | 151 | P151P | ccT | ccC | 10 | 12 | B.1.617.2 | 0.000038 |
N | 151 | P151P | ccT | ccA | 2 | 12 | B.1.617.2 | 0.000008 |
N | 151 | P151P | ccT | ccC | 9 | 11 | AY.4 | 0.000014 |
N | 151 | P151P | ccT | ccA | 2 | 11 | AY.4 | 0.000003 |
N | 151 | P151P | ccT | ccC | 9 | 11 | AY.44 | 0.000055 |
N | 151 | P151P | ccT | ccG | 1 | 11 | AY.44 | 0.000006 |
N | 151 | P151P | ccT | ccA | 1 | 11 | AY.44 | 0.000006 |
N | 151 | P151S | Cct | Tct | 11 | 11 | B.1.177.21 | 0.000841 |
N | 151 | P151S | Cct | Tct | 10 | 10 | AE.8 | 0.00489 |
N | 151 | P151L | cCt | cTt | 10 | 10 | AY.118 | 0.000626 |
N | 151 | P151L | cCt | cTt | 10 | 10 | AY.26 | 0.000283 |
N | 151 | P151P | ccT | ccC | 10 | 10 | AY.26 | 0.000283 |
N | 151 | P151S | Cct | Tct | 10 | 10 | AY.39 | 0.000247 |
N | 151 | P151L | cCt | cTt | 10 | 10 | AY.46.4 | 0.001645 |
N | 151 | P151L | cCt | cTt | 10 | 10 | B.1.160 | 0.000312 |
N | 151 | P151S | Cct | Tct | 10 | 10 | B.1.351 | 0.000297 |
N | 151 | P151H | cCt | cAt | 10 | 10 | B.1.617.2 | 0.000038 |
N | 151 | P151S | Cct | Tct | 10 | 10 | Q.3 | 0.00145 |
N | 151 | P151S | Cct | Tct | 9 | 9 | AY.120 | 0.000335 |
N | 151 | P151S | Cct | Tct | 9 | 9 | AY.33 | 0.000601 |
N | 151 | P151H | cCt | cAt | 9 | 9 | AY.42 | 0.000362 |
N | 151 | P151H | cCt | cAt | 9 | 9 | AY.47 | 0.00028 |
N | 151 | P151L | cCt | cTt | 9 | 9 | B.1.1.291 | 0.006682 |
N | 151 | P151H | cCt | cAt | 9 | 9 | B.1.1.7 | 0.000008 |
N | 151 | P151H | cCt | cAt | 8 | 8 | AY.100 | 0.000368 |
N | 151 | P151L | cCt | cTt | 8 | 8 | AY.106 | 0.002679 |
N | 151 | P151L | cCt | cTt | 8 | 8 | AY.37 | 0.002528 |
N | 151 | P151S | Cct | Tct | 8 | 8 | AY.46.6 | 0.000578 |
N | 151 | P151S | Cct | Tct | 8 | 8 | AY.47 | 0.000249 |
N | 151 | P151L | cCt | cTt | 8 | 8 | B.1.1.135 | 0.037559 |
N | 151 | P151del | CCT | --- | 7 | 7 | All | 0.000001 |
N | 151 | P151R | cCt | cGt | 7 | 7 | All | 0.000001 |
N | 151 | P151S | Cct | Tct | 7 | 7 | AY.114 | 0.001618 |
N | 151 | P151L | cCt | cTt | 7 | 7 | AY.119 | 0.000247 |
N | 151 | P151H | cCt | cAt | 7 | 7 | AY.4 | 0.000011 |
N | 151 | P151L | cCt | cTt | 7 | 7 | B.1.177.12 | 0.001062 |
N | 151 | P151S | Cct | Tct | 6 | 6 | AY.102 | 0.000159 |
N | 151 | P151S | Cct | Tct | 6 | 6 | AY.20 | 0.000233 |
N | 151 | P151L | cCt | cTt | 6 | 6 | AY.29.1 | 0.001323 |
N | 151 | P151S | Cct | Tct | 6 | 6 | AY.45 | 0.00073 |
N | 151 | P151P | ccT | ccA | 6 | 6 | AY.46 | 0.000624 |
N | 151 | P151L | cCt | cTt | 6 | 6 | AY.46.1 | 0.00616 |
N | 151 | P151P | ccT | ccG | 6 | 6 | AY.54 | 0.000572 |
N | 151 | P151S | Cct | Tct | 6 | 6 | AY.98 | 0.000474 |
N | 151 | P151L | cCt | cTt | 6 | 6 | AY.99 | 0.006296 |
N | 151 | P151L | cCt | cTt | 6 | 6 | B.1.1.420 | 0.006036 |
N | 151 | P151S | Cct | Tct | 6 | 6 | B.1.111 | 0.007051 |
N | 151 | P151H | cCt | cAt | 6 | 6 | B.1.177.81 | 0.001136 |
N | 151 | P151L | cCt | cTt | 6 | 6 | B.1.221 | 0.000426 |
N | 151 | P151L | cCt | cTt | 6 | 6 | B.1.348 | 0.109091 |
N | 151 | P151L | cCt | cTt | 6 | 6 | B.1.36 | 0.000875 |
N | 151 | P151L | cCt | cTt | 6 | 6 | C.37 | 0.000696 |
N | 151 | P151S | Cct | Tct | 5 | 5 | AY.110 | 0.000563 |
N | 151 | P151S | Cct | Tct | 5 | 5 | AY.117 | 0.000423 |
N | 151 | P151S | Cct | Tct | 5 | 5 | AY.3.1 | 0.000426 |
N | 151 | P151S | Cct | Tct | 5 | 5 | AY.39.1 | 0.000198 |
N | 151 | P151T | Cct | Act | 5 | 5 | AY.4 | 0.000008 |
N | 151 | P151L | cCt | cTt | 5 | 5 | AY.42 | 0.000201 |
N | 151 | P151L | cCt | cTt | 5 | 5 | AY.6 | 0.000206 |
N | 151 | P151S | Cct | Tct | 5 | 5 | AY.75 | 0.00028 |
N | 151 | P151L | cCt | cTt | 5 | 5 | AY.9.2 | 0.000184 |
N | 151 | P151S | Cct | Tct | 5 | 5 | AY.92 | 0.001436 |
N | 151 | P151L | cCt | cTt | 5 | 5 | AY.95 | 0.003805 |
N | 151 | P151H | cCt | cAt | 5 | 5 | AY.98.1 | 0.000242 |
N | 151 | P151S | Cct | Tct | 5 | 5 | AY.99.2 | 0.000461 |
N | 151 | P151P | ccT | ccC | 3 | 5 | B.1 | 0.000027 |
N | 151 | P151P | ccT | ccA | 2 | 5 | B.1 | 0.000018 |
N | 151 | P151S | Cct | Tct | 5 | 5 | B.1.1.519 | 0.000199 |
N | 151 | P151L | cCt | cTt | 5 | 5 | B.1.221.1 | 0.014535 |
N | 151 | P151S | Cct | Tct | 5 | 5 | B.1.280 | 0.035714 |
N | 151 | P151S | Cct | Tct | 5 | 5 | B.1.36.29 | 0.002587 |
N | 151 | P151L | cCt | cTt | 5 | 5 | B.1.568 | 0.005556 |
N | 151 | P151S | Cct | Tct | 5 | 5 | P.1.14 | 0.000239 |
N | 151 | P151L | cCt | cTt | 5 | 5 | Q.8 | 0.000825 |
N | 151 | P151P | ccT | ccC | 3 | 4 | AY.103 | 0.000019 |
N | 151 | P151P | ccT | ccG | 1 | 4 | AY.103 | 0.000006 |
N | 151 | P151S | Cct | Tct | 4 | 4 | AY.105 | 0.002572 |
N | 151 | P151L | cCt | cTt | 4 | 4 | AY.121 | 0.000541 |
N | 151 | P151P | ccT | ccC | 4 | 4 | AY.24 | 0.001724 |
N | 151 | P151L | cCt | cTt | 4 | 4 | AY.3.1 | 0.000341 |
N | 151 | P151L | cCt | cTt | 4 | 4 | AY.33 | 0.000267 |
N | 151 | P151L | cCt | cTt | 4 | 4 | AY.45 | 0.000487 |
N | 151 | P151L | cCt | cTt | 4 | 4 | AY.46 | 0.000416 |
N | 151 | P151T | Cct | Act | 4 | 4 | AY.47 | 0.000124 |
N | 151 | P151L | cCt | cTt | 4 | 4 | AY.5.4 | 0.001107 |
N | 151 | P151S | Cct | Tct | 4 | 4 | AY.55 | 0.00367 |
N | 151 | P151L | cCt | cTt | 4 | 4 | AY.68 | 0.001095 |
N | 151 | P151S | Cct | Tct | 4 | 4 | AY.7.1 | 0.000451 |
N | 151 | P151S | Cct | Tct | 4 | 4 | B.1.1.176 | 0.001757 |
N | 151 | P151H | cCt | cAt | 4 | 4 | B.1.1.214 | 0.000222 |
N | 151 | P151P | ccT | ccA | 4 | 4 | B.1.1.222 | 0.000816 |
N | 151 | P151P | ccT | ccC | 4 | 4 | B.1.177 | 0.000053 |
N | 151 | P151L | cCt | cTt | 4 | 4 | B.1.177.39 | 0.061538 |
N | 151 | P151S | Cct | Tct | 4 | 4 | B.1.177.73 | 0.002265 |
N | 151 | P151L | cCt | cTt | 4 | 4 | B.1.214.4 | 0.036364 |
N | 151 | P151P | ccT | ccA | 4 | 4 | B.1.221 | 0.000284 |
N | 151 | P151L | cCt | cTt | 4 | 4 | B.1.243 | 0.000278 |
N | 151 | P151S | Cct | Tct | 4 | 4 | B.1.36 | 0.000584 |
N | 151 | P151L | cCt | cTt | 4 | 4 | B.1.36.18 | 0.001681 |
N | 151 | P151S | Cct | Tct | 4 | 4 | B.1.36.19 | 0.037037 |
N | 151 | P151L | cCt | cTt | 4 | 4 | B.1.525 | 0.000453 |
N | 151 | P151S | Cct | Tct | 4 | 4 | B.1.619 | 0.003484 |
N | 151 | P151L | cCt | cTt | 4 | 4 | B.1.621 | 0.000354 |
N | 151 | P151L | cCt | cTt | 4 | 4 | P.2 | 0.000747 |
N | 151 | P151L | cCt | cTt | 3 | 3 | AY.100 | 0.000138 |
N | 151 | P151P | ccT | ccC | 3 | 3 | AY.100 | 0.000138 |
N | 151 | P151P | ccT | ccC | 3 | 3 | AY.102 | 0.00008 |
N | 151 | P151L | cCt | cTt | 3 | 3 | AY.105 | 0.001929 |
N | 151 | P151H | cCt | cAt | 3 | 3 | AY.118 | 0.000188 |
N | 151 | P151H | cCt | cAt | 3 | 3 | AY.16 | 0.001139 |
N | 151 | P151L | cCt | cTt | 3 | 3 | AY.16 | 0.001139 |
N | 151 | P151S | Cct | Tct | 3 | 3 | AY.23 | 0.000209 |
N | 151 | P151P | ccT | ccC | 2 | 3 | AY.25 | 0.000012 |
N | 151 | P151P | ccT | ccG | 1 | 3 | AY.25 | 0.000006 |
N | 151 | P151P | ccT | ccC | 3 | 3 | AY.42 | 0.000121 |
N | 151 | P151S | Cct | Tct | 3 | 3 | AY.54 | 0.000286 |
N | 151 | P151L | cCt | cTt | 3 | 3 | AY.61 | 0.000314 |
N | 151 | P151S | Cct | Tct | 3 | 3 | AY.7 | 0.000588 |
N | 151 | P151T | Cct | Act | 3 | 3 | AY.88 | 0.002653 |
N | 151 | P151L | cCt | cTt | 3 | 3 | AY.9 | 0.000203 |
N | 151 | P151T | Cct | Act | 2 | 3 | B.1 | 0.000018 |
N | 151 | P151T | CcT | AcC | 1 | 3 | B.1 | 0.000009 |
N | 151 | P151S | Cct | Tct | 3 | 3 | B.1.1.214 | 0.000166 |
N | 151 | P151S | Cct | Tct | 3 | 3 | B.1.1.222 | 0.000612 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.1.253 | 0.007519 |
N | 151 | P151A | Cct | Gct | 3 | 3 | B.1.1.258 | 0.009772 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.1.37 | 0.000579 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.1.434 | 0.001046 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.1.89 | 0.018182 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.177.4 | 0.000633 |
N | 151 | P151S | Cct | Tct | 3 | 3 | B.1.177.44 | 0.001557 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.177.57 | 0.000843 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.177.82 | 0.001432 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.234 | 0.000396 |
N | 151 | P151S | Cct | Tct | 3 | 3 | B.1.239 | 0.003663 |
N | 151 | P151L | cCt | cTt | 3 | 3 | B.1.428 | 0.003061 |
N | 151 | P151S | Cct | Tct | 3 | 3 | B.1.466.2 | 0.001174 |
N | 151 | P151S | Cct | Tct | 3 | 3 | C.16 | 0.003181 |
N | 151 | P151L | cCt | cTt | 3 | 3 | P.1.14 | 0.000143 |
N | 151 | P151H | cCt | cAt | 3 | 3 | P.1.14 | 0.000143 |
N | 151 | P151L | cCt | cTt | 3 | 3 | Q.1 | 0.000379 |
N | 151 | P151S | Cct | Tct | 3 | 3 | Q.5 | 0.050847 |
N | 151 | P151L | cCt | cTt | 3 | 3 | R.1 | 0.00027 |
N | 151 | P151T | Cct | Act | 1 | 2 | 0.055556 | |
N | 151 | P151T | CcT | AcA | 1 | 2 | 0.055556 | |
N | 151 | P151L | cCt | cTt | 2 | 2 | A | 0.000774 |
N | 151 | P151S | Cct | Tct | 2 | 2 | A.2.5 | 0.000998 |
N | 151 | P151G | CCT | GGG | 1 | 2 | All | 0 |
N | 151 | P151G | CCt | GGt | 1 | 2 | All | 0 |
N | 151 | P151H | cCt | cAt | 2 | 2 | AY.102 | 0.000053 |
N | 151 | P151P | ccT | ccC | 1 | 2 | AY.108 | 0.001103 |
N | 151 | P151P | ccT | ccA | 1 | 2 | AY.108 | 0.001103 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.113 | 0.000285 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.120.2 | 0.002571 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.16.1 | 0.00094 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.23.1 | 0.000835 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.28 | 0.003781 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.29.1 | 0.000441 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.32 | 0.001065 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.32 | 0.001065 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.34 | 0.000194 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.35 | 0.000466 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.36 | 0.000296 |
N | 151 | P151P | ccT | ccC | 2 | 2 | AY.39 | 0.000049 |
N | 151 | P151H | cCt | cAt | 2 | 2 | AY.39 | 0.000049 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.4.5 | 0.000215 |
N | 151 | P151H | cCt | cAt | 2 | 2 | AY.43 | 0.000009 |
N | 151 | P151H | cCt | cAt | 2 | 2 | AY.44 | 0.000012 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.46 | 0.000208 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.46.2 | 0.001271 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.48 | 0.00093 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.5.3 | 0.000675 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.52 | 0.001629 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.53 | 0.000575 |
N | 151 | P151H | cCt | cAt | 2 | 2 | AY.68 | 0.000547 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.7.1 | 0.000225 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.7.2 | 0.001119 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.75 | 0.000112 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.75.1 | 0.000361 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.85 | 0.000854 |
N | 151 | P151S | Cct | Tct | 2 | 2 | AY.9 | 0.000135 |
N | 151 | P151L | cCt | cTt | 2 | 2 | AY.98.1 | 0.000097 |
N | 151 | P151P | ccT | ccC | 1 | 2 | AY.99 | 0.001049 |
N | 151 | P151P | ccT | ccA | 1 | 2 | AY.99 | 0.001049 |
N | 151 | P151H | cCt | cAt | 2 | 2 | B.1 | 0.000018 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.1.1 | 0.000653 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.1.214 | 0.000111 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.1.241 | 0.004141 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.1.28 | 0.000622 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.1.28 | 0.000622 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.1.280 | 0.006173 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.1.306 | 0.000877 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.1.396 | 0.090909 |
N | 151 | P151P | ccT | ccC | 2 | 2 | B.1.1.519 | 0.000079 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.1.56 | 0.035714 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.1.63 | 0.000772 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.160.30 | 0.005952 |
N | 151 | P151P | ccT | ccC | 2 | 2 | B.1.177.16 | 0.001329 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.177.17 | 0.001642 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.177.58 | 0.002663 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.177.81 | 0.000379 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.177.86 | 0.000367 |
N | 151 | P151H | cCt | cAt | 2 | 2 | B.1.2 | 0.000018 |
N | 151 | P151P | ccT | ccG | 1 | 2 | B.1.2 | 0.000009 |
N | 151 | P151P | ccT | ccA | 1 | 2 | B.1.2 | 0.000009 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.206 | 0.001631 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.221.3 | 0.001667 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.234 | 0.000264 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.240 | 0.000431 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.258 | 0.000133 |
N | 151 | P151P | ccT | ccA | 2 | 2 | B.1.258 | 0.000133 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.258 | 0.000133 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.351.3 | 0.001753 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.36.17 | 0.000988 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.36.27 | 0.001527 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.36.31 | 0.003503 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.371 | 0.002245 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.399 | 0.003868 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.466.2 | 0.000782 |
N | 151 | P151T | Cct | Act | 2 | 2 | B.1.564 | 0.000852 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.575 | 0.000607 |
N | 151 | P151H | cCt | cAt | 2 | 2 | B.1.595 | 0.000522 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.596 | 0.000174 |
N | 151 | P151P | ccT | ccC | 1 | 2 | B.1.596 | 0.000087 |
N | 151 | P151P | ccT | ccG | 1 | 2 | B.1.596 | 0.000087 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.609 | 0.000959 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.617.1 | 0.000258 |
N | 151 | P151T | Cct | Act | 2 | 2 | B.1.617.2 | 0.000008 |
N | 151 | P151G | CCT | GGG | 1 | 2 | B.1.617.2 | 0.000004 |
N | 151 | P151A | CcT | GcG | 1 | 2 | B.1.617.2 | 0.000004 |
N | 151 | P151A | Cct | Gct | 1 | 2 | B.1.617.2 | 0.000004 |
N | 151 | P151G | CCt | GGt | 1 | 2 | B.1.617.2 | 0.000004 |
N | 151 | P151P | ccT | ccC | 2 | 2 | B.1.621 | 0.000177 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.623 | 0.001073 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.628 | 0.000705 |
N | 151 | P151L | cCt | cTt | 2 | 2 | B.1.637 | 0.000146 |
N | 151 | P151S | Cct | Tct | 2 | 2 | B.1.637 | 0.000146 |
N | 151 | P151A | Cct | Gct | 2 | 2 | D.2 | 0.00015 |
N | 151 | P151S | Cct | Tct | 2 | 2 | D.2 | 0.00015 |
N | 151 | P151L | cCt | cTt | 2 | 2 | P.1.15 | 0.000465 |
N | 151 | P151L | cCt | cTt | 2 | 2 | P.1.16 | 0.000748 |
N | 151 | P151S | Cct | Tct | 2 | 2 | P.1.17.1 | 0.00175 |
N | 151 | P151S | Cct | Tct | 2 | 2 | Q.8 | 0.00033 |
N | 151 | P151N | CCt | AAt | 1 | 1 | 0.055556 | |
N | 151 | P151P | ccT | ccA | 1 | 1 | 0.055556 | |
N | 151 | P151H | cCt | cAt | 1 | 1 | 0.055556 | |
N | 151 | P151K | CCT | AAA | 1 | 1 | 0.055556 | |
N | 151 | P151Q | cCT | cAA | 1 | 1 | 0.055556 | |
N | 151 | P151L | cCt | cTt | 1 | 1 | A.2.2 | 0.001689 |
N | 151 | P151L | cCt | cTt | 1 | 1 | A.2.5 | 0.000499 |
N | 151 | P151L | cCt | cTt | 1 | 1 | A.2.5.2 | 0.001572 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AD.2 | 0.000219 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AE.8 | 0.000489 |
N | 151 | P151K | CCT | AAA | 1 | 1 | All | 0 |
N | 151 | P151del2 | cCT | c-- | 1 | 1 | All | 0 |
N | 151 | P151N | CCt | AAt | 1 | 1 | All | 0 |
N | 151 | P151Q | cCT | cAA | 1 | 1 | All | 0 |
N | 151 | P151del1 | Cct | -ct | 1 | 1 | All | 0 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AU.2 | 0.002421 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.100 | 0.000046 |
N | 151 | P151R | cCt | cGt | 1 | 1 | AY.100 | 0.000046 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.101 | 0.00049 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.109 | 0.00074 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.11 | 0.001339 |
N | 151 | P151R | cCt | cGt | 1 | 1 | AY.110 | 0.000113 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.110 | 0.000113 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.117 | 0.000085 |
N | 151 | P151T | Cct | Act | 1 | 1 | AY.118 | 0.000063 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.12 | 0.000316 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.12 | 0.000316 |
N | 151 | P151R | cCt | cGt | 1 | 1 | AY.12 | 0.000316 |
N | 151 | P151P | ccT | ccC | 1 | 1 | AY.120 | 0.000037 |
N | 151 | P151P | ccT | ccA | 1 | 1 | AY.13 | 0.000161 |
N | 151 | P151P | ccT | ccC | 1 | 1 | AY.14 | 0.000088 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.14 | 0.000088 |
N | 151 | P151P | ccT | ccC | 1 | 1 | AY.16.1 | 0.00047 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.2 | 0.000356 |
N | 151 | P151H | cCt | cAt | 1 | 1 | AY.25 | 0.000006 |
N | 151 | P151T | Cct | Act | 1 | 1 | AY.29 | 0.000016 |
N | 151 | P151H | cCt | cAt | 1 | 1 | AY.29 | 0.000016 |
N | 151 | P151P | ccT | ccC | 1 | 1 | AY.3.1 | 0.000085 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.34 | 0.000097 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.34.1 | 0.00051 |
N | 151 | P151del | CCT | --- | 1 | 1 | AY.4 | 0.000002 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.4.1 | 0.000737 |
N | 151 | P151P | ccT | ccC | 1 | 1 | AY.4.1 | 0.000737 |
N | 151 | P151H | cCt | cAt | 1 | 1 | AY.4.2 | 0.000022 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.4.2.1 | 0.000149 |
N | 151 | P151P | ccT | ccA | 1 | 1 | AY.4.4 | 0.000409 |
N | 151 | P151P | ccT | ccG | 1 | 1 | AY.40 | 0.000964 |
N | 151 | P151R | cCt | cGt | 1 | 1 | AY.43 | 0.000004 |
N | 151 | P151H | cCt | cAt | 1 | 1 | AY.46 | 0.000104 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.46.3 | 0.000934 |
N | 151 | P151H | cCt | cAt | 1 | 1 | AY.46.4 | 0.000165 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.46.4 | 0.000165 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.46.5 | 0.000198 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.47 | 0.000031 |
N | 151 | P151H | cCt | cAt | 1 | 1 | AY.5 | 0.000021 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.53 | 0.000288 |
N | 151 | P151P | ccT | ccA | 1 | 1 | AY.58 | 0.000907 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.63 | 0.000387 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.64 | 0.000595 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.65 | 0.000533 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.67 | 0.000464 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.69 | 0.000187 |
N | 151 | P151P | ccT | ccC | 1 | 1 | AY.69 | 0.000187 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.7 | 0.000196 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.7.2 | 0.000559 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.73 | 0.000665 |
N | 151 | P151T | Cct | Act | 1 | 1 | AY.73 | 0.000665 |
N | 151 | P151P | ccT | ccC | 1 | 1 | AY.74 | 0.000116 |
N | 151 | P151H | cCt | cAt | 1 | 1 | AY.74 | 0.000116 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.74 | 0.000116 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.75.1 | 0.00018 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.8 | 0.000606 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.8 | 0.000606 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.82 | 0.001357 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.84 | 0.000437 |
N | 151 | P151F | CCt | TTt | 1 | 1 | AY.88 | 0.000884 |
N | 151 | P151A | Cct | Gct | 1 | 1 | AY.88 | 0.000884 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.9.1 | 0.000084 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.91 | 0.00073 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.92 | 0.000287 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.93 | 0.000273 |
N | 151 | P151S | Cct | Tct | 1 | 1 | AY.95 | 0.000761 |
N | 151 | P151T | Cct | Act | 1 | 1 | AY.98.1 | 0.000048 |
N | 151 | P151L | cCt | cTt | 1 | 1 | AY.99.2 | 0.000092 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B | 0.000128 |
N | 151 | P151T | Cct | Act | 1 | 1 | B | 0.000128 |
N | 151 | P151P | ccT | ccC | 1 | 1 | B | 0.000128 |
N | 151 | P151A | Cct | Gct | 1 | 1 | B.1 | 0.000009 |
N | 151 | P151P | ccT | ccC | 1 | 1 | B.1.1 | 0.000018 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.1 | 0.000327 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.10 | 0.001115 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.153 | 0.001095 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.159 | 0.004673 |
N | 151 | P151P | ccT | ccA | 1 | 1 | B.1.1.214 | 0.000055 |
N | 151 | P151R | cCt | cGt | 1 | 1 | B.1.1.214 | 0.000055 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.222 | 0.000204 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.236 | 0.006897 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.25 | 0.000569 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.266 | 0.012195 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.279 | 0.001121 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.298 | 0.000862 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.304 | 0.002809 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.305 | 0.003861 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.306 | 0.000438 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.312 | 0.001912 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.317 | 0.000412 |
N | 151 | P151P | ccT | ccA | 1 | 1 | B.1.1.329 | 0.003846 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.33 | 0.000421 |
N | 151 | P151P | ccT | ccA | 1 | 1 | B.1.1.348 | 0.000796 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.348 | 0.000796 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.356 | 0.008547 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.368 | 0.003086 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.369 | 0.000446 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.378 | 0.007299 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.39 | 0.00051 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.398 | 0.003226 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.409 | 0.002833 |
N | 151 | P151del | CCT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.1.47 | 0.005348 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.487 | 0.005587 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.50 | 0.000679 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.52 | 0.012195 |
N | 151 | P151del | CCT | --- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 151 | P151T | Cct | Act | 1 | 1 | B.1.1.7 | 0.000001 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.1.70 | 0.000341 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.110.3 | 0.000718 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.112 | 0.005181 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.126 | 0.001276 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.139 | 0.000733 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.146 | 0.004237 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.147 | 0.000756 |
N | 151 | P151P | ccT | ccA | 1 | 1 | B.1.160 | 0.000031 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.160.28 | 0.002924 |
N | 151 | P151A | Cct | Gct | 1 | 1 | B.1.177 | 0.000013 |
N | 151 | P151del2 | cCT | c-- | 1 | 1 | B.1.177 | 0.000013 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.10 | 0.000878 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.11 | 0.001698 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.15 | 0.000631 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.16 | 0.000664 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.17 | 0.000821 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.18 | 0.00116 |
N | 151 | P151P | ccT | ccA | 1 | 1 | B.1.177.21 | 0.000076 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.35 | 0.000691 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.38 | 0.010417 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.41 | 0.0025 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.45 | 0.000381 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.51 | 0.004566 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.54 | 0.000606 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.55 | 0.002331 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.57 | 0.000281 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.58 | 0.001332 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.60 | 0.000218 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.62 | 0.001192 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.65 | 0.000665 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.77 | 0.000726 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.177.8 | 0.000752 |
N | 151 | P151del | CCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.177.85 | 0.005435 |
N | 151 | P151P | ccT | ccG | 1 | 1 | B.1.177.87 | 0.000728 |
N | 151 | P151del1 | Cct | -ct | 1 | 1 | B.1.2 | 0.000009 |
N | 151 | P151A | Cct | Gct | 1 | 1 | B.1.2 | 0.000009 |
N | 151 | P151T | Cct | Act | 1 | 1 | B.1.2 | 0.000009 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.239 | 0.001221 |
N | 151 | P151R | cCt | cGt | 1 | 1 | B.1.240 | 0.000216 |
N | 151 | P151H | cCt | cAt | 1 | 1 | B.1.243 | 0.00007 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.243 | 0.00007 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.247 | 0.014925 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.258.11 | 0.000396 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.281 | 0.021739 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.311 | 0.000275 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.311 | 0.000275 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.321 | 0.034483 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.356 | 0.001727 |
N | 151 | P151A | Cct | Gct | 1 | 1 | B.1.36 | 0.000146 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.36.1 | 0.00114 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.36.1 | 0.00114 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.36.18 | 0.00042 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.36.22 | 0.001208 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.36.24 | 0.006173 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.36.8 | 0.001 |
N | 151 | P151P | ccT | ccA | 1 | 1 | B.1.36.8 | 0.001 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.367 | 0.000792 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.396 | 0.000706 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.400 | 0.000429 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.408 | 0.00369 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.416 | 0.001269 |
N | 151 | P151del | CCT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 151 | P151H | cCt | cAt | 1 | 1 | B.1.427 | 0.00005 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.436 | 0.001029 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.448 | 0.002625 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.468 | 0.005714 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.478 | 0.011765 |
N | 151 | P151P | ccT | ccC | 1 | 1 | B.1.499 | 0.00105 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.503 | 0.002488 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.517 | 0.000427 |
N | 151 | P151P | ccT | ccC | 1 | 1 | B.1.517.1 | 0.005263 |
N | 151 | P151H | cCt | cAt | 1 | 1 | B.1.525 | 0.000113 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.525 | 0.000113 |
N | 151 | P151T | Cct | Act | 1 | 1 | B.1.526 | 0.000024 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.530 | 0.007143 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.538 | 0.008065 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.541 | 0.004425 |
N | 151 | P151R | cCt | cGt | 1 | 1 | B.1.551 | 0.00129 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.560 | 0.00463 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.561 | 0.000397 |
N | 151 | P151P | ccT | ccC | 1 | 1 | B.1.561 | 0.000397 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.564 | 0.000426 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.564.1 | 0.001577 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.568 | 0.001111 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.575 | 0.000303 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.577 | 0.000687 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.582 | 0.000491 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.588 | 0.00091 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.595 | 0.000261 |
N | 151 | P151T | Cct | Act | 1 | 1 | B.1.596 | 0.000087 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.596 | 0.000087 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.605 | 0.005952 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.609 | 0.000479 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.617.1 | 0.000129 |
N | 151 | P151del | CCT | --- | 1 | 1 | B.1.617.2 | 0.000004 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.617.3 | 0.002985 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.621 | 0.000089 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.623 | 0.000536 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.627 | 0.00202 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.630 | 0.005236 |
N | 151 | P151L | cCt | cTt | 1 | 1 | B.1.9.5 | 0.005682 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.1.9.5 | 0.005682 |
N | 151 | P151S | Cct | Tct | 1 | 1 | B.6 | 0.00091 |
N | 151 | P151L | cCt | cTt | 1 | 1 | C.1 | 0.002392 |
N | 151 | P151L | cCt | cTt | 1 | 1 | C.14 | 0.004329 |
N | 151 | P151S | Cct | Tct | 1 | 1 | C.27 | 0.018519 |
N | 151 | P151L | cCt | cTt | 1 | 1 | C.3 | 0.007634 |
N | 151 | P151L | cCt | cTt | 1 | 1 | C.36 | 0.000911 |
N | 151 | P151P | ccT | ccA | 1 | 1 | C.36 | 0.000911 |
N | 151 | P151F | CCt | TTt | 1 | 1 | C.37 | 0.000116 |
N | 151 | P151T | Cct | Act | 1 | 1 | C.37 | 0.000116 |
N | 151 | P151H | cCt | cAt | 1 | 1 | C.37 | 0.000116 |
N | 151 | P151S | Cct | Tct | 1 | 1 | C.8 | 0.004464 |
N | 151 | P151L | cCt | cTt | 1 | 1 | D.5 | 0.004975 |
N | 151 | P151L | cCt | cTt | 1 | 1 | N.5 | 0.001767 |
N | 151 | P151T | Cct | Act | 1 | 1 | P.1 | 0.000016 |
N | 151 | P151del | CCT | --- | 1 | 1 | P.1 | 0.000016 |
N | 151 | P151P | ccT | ccC | 1 | 1 | P.1 | 0.000016 |
N | 151 | P151S | Cct | Tct | 1 | 1 | P.1.15 | 0.000232 |
N | 151 | P151S | Cct | Tct | 1 | 1 | P.1.17 | 0.000162 |
N | 151 | P151L | cCt | cTt | 1 | 1 | P.1.2 | 0.001156 |
N | 151 | P151S | Cct | Tct | 1 | 1 | P.6 | 0.003145 |
N | 151 | P151L | cCt | cTt | 1 | 1 | Q.2 | 0.000613 |
N | 151 | P151L | cCt | cTt | 1 | 1 | Q.3 | 0.000145 |
N | 151 | P151S | Cct | Tct | 1 | 1 | R.1 | 0.00009 |
N | 151 | P151L | cCt | cTt | 1 | 1 | U.2 | 0.008772 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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