CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 138 | A138A | syn | gcC | gcT | 2713 | 2239 | 0.825286 | 28685-28687 | |
N | 138 | A138A | syn | gcC | gcA | 2713 | 472 | 0.173977 | 28685-28687 | |
N | 138 | A138A | syn | gcC | gcG | 2713 | 2 | 0.000737191 | 28685-28687 | |
N | 138 | A138S | nonsyn | Gcc | Tcc | 962 | 959 | 0.996881 | 28685-28687 | |
N | 138 | A138S | nonsyn | GCc | AGc | 962 | 2 | 0.002079 | 28685-28687 | |
N | 138 | A138S | nonsyn | GcC | TcG | 962 | 1 | 0.0010395 | 28685-28687 | |
N | 138 | A138T | nonsyn | Gcc | Acc | 8 | 7 | 0.875 | 28685-28687 | |
N | 138 | A138T | nonsyn | GcC | AcG | 8 | 1 | 0.125 | 28685-28687 | |
N | 138 | A138G | nonsyn | gCc | gGc | 7 | 5 | 0.714286 | 28685-28687 | |
N | 138 | A138G | nonsyn | gCC | gGT | 7 | 1 | 0.142857 | 28685-28687 | |
N | 138 | A138G | nonsyn | gCC | gGG | 7 | 1 | 0.142857 | 28685-28687 | |
N | 138 | A138V | nonsyn | gCc | gTc | 6 | 6 | 1 | 28685-28687 | |
N | 138 | A138del | del | GCC | --- | 4 | 4 | 1 | 28685-28687 | |
N | 138 | A138P | nonsyn | Gcc | Ccc | 3 | 2 | 0.666667 | 28685-28687 | |
N | 138 | A138P | nonsyn | GcC | CcG | 3 | 1 | 0.333333 | 28685-28687 | |
N | 138 | A138D | nonsyn | gCc | gAc | 2 | 2 | 1 | 28685-28687 | |
N | 138 | A138W | nonsyn | GCC | TGG | 1 | 1 | 1 | 28685-28687 | |
N | 138 | A138R | nonsyn | GCC | AGG | 1 | 1 | 1 | 28685-28687 | |
N | 138 | A138C | nonsyn | GCc | TGc | 1 | 1 | 1 | 28685-28687 | |
N | 138 | A138del1 | del | gcC | gc- | 1 | 1 | 1 | 28685-28687 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 138 | A138A | gcC | gcT | 2239 | 2713 | All | 0.000428 |
N | 138 | A138A | gcC | gcA | 472 | 2713 | All | 0.00009 |
N | 138 | A138A | gcC | gcG | 2 | 2713 | All | 0 |
N | 138 | A138A | gcC | gcT | 965 | 1003 | B.1.1.7 | 0.000864 |
N | 138 | A138A | gcC | gcA | 38 | 1003 | B.1.1.7 | 0.000034 |
N | 138 | A138S | Gcc | Tcc | 959 | 962 | All | 0.000183 |
N | 138 | A138S | GCc | AGc | 2 | 962 | All | 0 |
N | 138 | A138S | GcC | TcG | 1 | 962 | All | 0 |
N | 138 | A138A | gcC | gcT | 646 | 647 | AY.4 | 0.001005 |
N | 138 | A138A | gcC | gcA | 1 | 647 | AY.4 | 0.000002 |
N | 138 | A138A | gcC | gcA | 218 | 238 | B.1.429 | 0.005129 |
N | 138 | A138A | gcC | gcT | 20 | 238 | B.1.429 | 0.000471 |
N | 138 | A138S | Gcc | Tcc | 177 | 177 | AY.4 | 0.000275 |
N | 138 | A138S | Gcc | Tcc | 157 | 157 | B.1.1.7 | 0.000141 |
N | 138 | A138S | Gcc | Tcc | 138 | 138 | AY.43 | 0.000611 |
N | 138 | A138A | gcC | gcA | 124 | 130 | AY.26 | 0.00351 |
N | 138 | A138A | gcC | gcT | 6 | 130 | AY.26 | 0.00017 |
N | 138 | A138S | Gcc | Tcc | 114 | 114 | AY.119 | 0.004025 |
N | 138 | A138S | Gcc | Tcc | 91 | 91 | B.1.617.2 | 0.000343 |
N | 138 | A138A | gcC | gcT | 57 | 74 | AY.43 | 0.000253 |
N | 138 | A138A | gcC | gcA | 17 | 74 | AY.43 | 0.000075 |
N | 138 | A138A | gcC | gcT | 65 | 67 | AY.25 | 0.000391 |
N | 138 | A138A | gcC | gcA | 2 | 67 | AY.25 | 0.000012 |
N | 138 | A138A | gcC | gcT | 46 | 50 | B.1.617.2 | 0.000173 |
N | 138 | A138A | gcC | gcA | 4 | 50 | B.1.617.2 | 0.000015 |
N | 138 | A138A | gcC | gcT | 48 | 48 | AY.103 | 0.000298 |
N | 138 | A138A | gcC | gcT | 44 | 45 | B.1.2 | 0.000387 |
N | 138 | A138A | gcC | gcA | 1 | 45 | B.1.2 | 0.000009 |
N | 138 | A138S | Gcc | Tcc | 34 | 34 | AY.102 | 0.000901 |
N | 138 | A138A | gcC | gcT | 31 | 32 | B.1.177 | 0.000408 |
N | 138 | A138A | gcC | gcA | 1 | 32 | B.1.177 | 0.000013 |
N | 138 | A138S | Gcc | Tcc | 31 | 31 | AY.25 | 0.000186 |
N | 138 | A138A | gcC | gcT | 27 | 28 | P.1.7 | 0.008621 |
N | 138 | A138A | gcC | gcA | 1 | 28 | P.1.7 | 0.000319 |
N | 138 | A138A | gcC | gcT | 24 | 24 | AY.44 | 0.000146 |
N | 138 | A138A | gcC | gcA | 22 | 22 | AJ.1 | 1 |
N | 138 | A138S | Gcc | Tcc | 22 | 22 | AY.103 | 0.000137 |
N | 138 | A138A | gcC | gcT | 22 | 22 | AY.63 | 0.008511 |
N | 138 | A138A | gcC | gcA | 10 | 20 | B.1 | 0.000092 |
N | 138 | A138A | gcC | gcT | 10 | 20 | B.1 | 0.000092 |
N | 138 | A138A | gcC | gcT | 17 | 17 | P.1 | 0.000268 |
N | 138 | A138A | gcC | gcT | 16 | 16 | B.1.1.369 | 0.00714 |
N | 138 | A138A | gcC | gcA | 14 | 14 | B.1.1.220 | 0.026022 |
N | 138 | A138A | gcC | gcT | 12 | 12 | AY.27 | 0.000777 |
N | 138 | A138S | Gcc | Tcc | 12 | 12 | AY.39 | 0.000297 |
N | 138 | A138A | gcC | gcT | 12 | 12 | B.1.177.75 | 0.012487 |
N | 138 | A138A | gcC | gcT | 11 | 11 | AY.3 | 0.000109 |
N | 138 | A138A | gcC | gcT | 10 | 11 | AY.39 | 0.000247 |
N | 138 | A138A | gcC | gcA | 1 | 11 | AY.39 | 0.000025 |
N | 138 | A138S | Gcc | Tcc | 11 | 11 | B.1.177.81 | 0.002083 |
N | 138 | A138S | Gcc | Tcc | 10 | 10 | AY.20 | 0.000389 |
N | 138 | A138A | gcC | gcT | 7 | 10 | AY.20 | 0.000272 |
N | 138 | A138A | gcC | gcA | 3 | 10 | AY.20 | 0.000117 |
N | 138 | A138A | gcC | gcT | 10 | 10 | AY.39.1 | 0.000396 |
N | 138 | A138T | Gcc | Acc | 7 | 8 | All | 0.000001 |
N | 138 | A138T | GcC | AcG | 1 | 8 | All | 0 |
N | 138 | A138A | gcC | gcT | 7 | 8 | AY.46 | 0.000729 |
N | 138 | A138A | gcC | gcA | 1 | 8 | AY.46 | 0.000104 |
N | 138 | A138A | gcC | gcT | 7 | 8 | B.1.1 | 0.000127 |
N | 138 | A138A | gcC | gcA | 1 | 8 | B.1.1 | 0.000018 |
N | 138 | A138A | gcC | gcT | 7 | 8 | B.1.596 | 0.00061 |
N | 138 | A138A | gcC | gcA | 1 | 8 | B.1.596 | 0.000087 |
N | 138 | A138S | Gcc | Tcc | 7 | 7 | A.2.5 | 0.003493 |
N | 138 | A138G | gCc | gGc | 5 | 7 | All | 0.000001 |
N | 138 | A138G | gCC | gGG | 1 | 7 | All | 0 |
N | 138 | A138G | gCC | gGT | 1 | 7 | All | 0 |
N | 138 | A138S | Gcc | Tcc | 7 | 7 | B.1.617.1 | 0.000903 |
N | 138 | A138V | gCc | gTc | 6 | 6 | All | 0.000001 |
N | 138 | A138S | Gcc | Tcc | 6 | 6 | AY.33 | 0.000401 |
N | 138 | A138S | Gcc | Tcc | 6 | 6 | B.1 | 0.000055 |
N | 138 | A138S | Gcc | Tcc | 5 | 5 | AY.23 | 0.000349 |
N | 138 | A138A | gcC | gcT | 5 | 5 | AY.4.4 | 0.002046 |
N | 138 | A138A | gcC | gcT | 5 | 5 | AY.61 | 0.000524 |
N | 138 | A138S | Gcc | Tcc | 5 | 5 | B.1.1 | 0.000091 |
N | 138 | A138S | Gcc | Tcc | 5 | 5 | B.1.177 | 0.000066 |
N | 138 | A138A | gcC | gcT | 5 | 5 | B.1.221 | 0.000355 |
N | 138 | A138S | Gcc | Tcc | 5 | 5 | B.1.427 | 0.000252 |
N | 138 | A138S | Gcc | Tcc | 5 | 5 | B.1.429 | 0.000118 |
N | 138 | A138S | Gcc | Tcc | 5 | 5 | B.1.526 | 0.000118 |
N | 138 | A138A | gcC | gcT | 4 | 5 | C.37 | 0.000464 |
N | 138 | A138A | gcC | gcA | 1 | 5 | C.37 | 0.000116 |
N | 138 | A138del | GCC | --- | 4 | 4 | All | 0.000001 |
N | 138 | A138S | Gcc | Tcc | 4 | 4 | AY.3 | 0.00004 |
N | 138 | A138A | gcC | gcT | 4 | 4 | AY.4.2.1 | 0.000596 |
N | 138 | A138S | Gcc | Tcc | 4 | 4 | AY.44 | 0.000024 |
N | 138 | A138S | Gcc | Tcc | 4 | 4 | AY.45 | 0.000487 |
N | 138 | A138A | gcC | gcT | 3 | 4 | AY.5 | 0.000062 |
N | 138 | A138A | gcC | gcA | 1 | 4 | AY.5 | 0.000021 |
N | 138 | A138A | gcC | gcT | 4 | 4 | AY.75 | 0.000224 |
N | 138 | A138S | Gcc | Tcc | 4 | 4 | AY.9 | 0.00027 |
N | 138 | A138S | Gcc | Tcc | 4 | 4 | B.1.1.519 | 0.000159 |
N | 138 | A138S | Gcc | Tcc | 4 | 4 | B.1.36 | 0.000584 |
N | 138 | A138A | gcC | gcT | 4 | 4 | B.1.575 | 0.001214 |
N | 138 | A138S | Gcc | Tcc | 4 | 4 | D.2 | 0.0003 |
N | 138 | A138G | gCc | gGc | 2 | 3 | 0.111111 | |
N | 138 | A138T | Gcc | Acc | 2 | 3 | 0.111111 | |
N | 138 | A138S | GCc | AGc | 1 | 3 | 0.055556 | |
N | 138 | A138S | Gcc | Tcc | 1 | 3 | 0.055556 | |
N | 138 | A138S | GcC | TcG | 1 | 3 | 0.055556 | |
N | 138 | A138G | gCC | gGG | 1 | 3 | 0.055556 | |
N | 138 | A138T | GcC | AcG | 1 | 3 | 0.055556 | |
N | 138 | A138P | Gcc | Ccc | 2 | 3 | All | 0 |
N | 138 | A138P | GcC | CcG | 1 | 3 | All | 0 |
N | 138 | A138A | gcC | gcT | 3 | 3 | AY.108 | 0.003308 |
N | 138 | A138S | Gcc | Tcc | 3 | 3 | AY.118 | 0.000188 |
N | 138 | A138A | gcC | gcT | 2 | 3 | AY.119 | 0.000071 |
N | 138 | A138A | gcC | gcG | 1 | 3 | AY.119 | 0.000035 |
N | 138 | A138S | Gcc | Tcc | 3 | 3 | AY.16 | 0.001139 |
N | 138 | A138A | gcC | gcT | 3 | 3 | AY.42 | 0.000121 |
N | 138 | A138S | Gcc | Tcc | 3 | 3 | AY.46 | 0.000312 |
N | 138 | A138A | gcC | gcT | 3 | 3 | B.1.1.384 | 0.071429 |
N | 138 | A138A | gcC | gcT | 3 | 3 | B.1.177.44 | 0.001557 |
N | 138 | A138A | gcC | gcT | 3 | 3 | C.1 | 0.007177 |
N | 138 | A138S | Gcc | Tcc | 3 | 3 | P.1 | 0.000047 |
N | 138 | A138D | gCc | gAc | 2 | 2 | All | 0 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AY.108 | 0.002205 |
N | 138 | A138A | gcC | gcA | 2 | 2 | AY.23 | 0.000139 |
N | 138 | A138A | gcC | gcT | 2 | 2 | AY.29 | 0.000032 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AY.3.1 | 0.000171 |
N | 138 | A138A | gcC | gcT | 2 | 2 | AY.33 | 0.000134 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AY.34 | 0.000194 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AY.5.4 | 0.000553 |
N | 138 | A138A | gcC | gcT | 1 | 2 | AY.53 | 0.000288 |
N | 138 | A138A | gcC | gcA | 1 | 2 | AY.53 | 0.000288 |
N | 138 | A138A | gcC | gcT | 2 | 2 | AY.57 | 0.001312 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AY.61 | 0.00021 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AY.9.1 | 0.000167 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AY.98 | 0.000158 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | AZ.1 | 0.001735 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | B | 0.000256 |
N | 138 | A138V | gCc | gTc | 2 | 2 | B.1 | 0.000018 |
N | 138 | A138A | gcC | gcT | 2 | 2 | B.1.1.25 | 0.001137 |
N | 138 | A138A | gcC | gcT | 2 | 2 | B.1.1.284 | 0.000215 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | B.1.110 | 0.00905 |
N | 138 | A138A | gcC | gcT | 2 | 2 | B.1.147 | 0.001512 |
N | 138 | A138A | gcC | gcT | 2 | 2 | B.1.160 | 0.000062 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | B.1.177.11 | 0.003396 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | B.1.2 | 0.000018 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | B.1.214.2 | 0.001199 |
N | 138 | A138A | gcC | gcT | 1 | 2 | B.1.427 | 0.00005 |
N | 138 | A138A | gcC | gcA | 1 | 2 | B.1.427 | 0.00005 |
N | 138 | A138A | gcC | gcT | 1 | 2 | B.1.438.1 | 0.000107 |
N | 138 | A138A | gcC | gcA | 1 | 2 | B.1.438.1 | 0.000107 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | B.1.621 | 0.000177 |
N | 138 | A138A | gcC | gcT | 2 | 2 | B.4.6 | 0.033333 |
N | 138 | A138A | gcC | gcT | 2 | 2 | P.1.15 | 0.000465 |
N | 138 | A138S | Gcc | Tcc | 2 | 2 | Q.8 | 0.00033 |
N | 138 | A138V | gCc | gTc | 1 | 1 | 0.055556 | |
N | 138 | A138C | GCc | TGc | 1 | 1 | 0.055556 | |
N | 138 | A138R | GCC | AGG | 1 | 1 | 0.055556 | |
N | 138 | A138W | GCC | TGG | 1 | 1 | 0.055556 | |
N | 138 | A138A | gcC | gcG | 1 | 1 | 0.055556 | |
N | 138 | A138P | GcC | CcG | 1 | 1 | A | 0.000387 |
N | 138 | A138A | gcC | gcT | 1 | 1 | A.2.5 | 0.000499 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | A.23.1 | 0.000704 |
N | 138 | A138A | gcC | gcT | 1 | 1 | A.23.1 | 0.000704 |
N | 138 | A138W | GCC | TGG | 1 | 1 | All | 0 |
N | 138 | A138del1 | gcC | gc- | 1 | 1 | All | 0 |
N | 138 | A138R | GCC | AGG | 1 | 1 | All | 0 |
N | 138 | A138C | GCc | TGc | 1 | 1 | All | 0 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AW.1 | 0.003049 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.100 | 0.000046 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.100 | 0.000046 |
N | 138 | A138P | Gcc | Ccc | 1 | 1 | AY.100 | 0.000046 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.101 | 0.00049 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.102 | 0.000027 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.105 | 0.000643 |
N | 138 | A138A | gcC | gcA | 1 | 1 | AY.113 | 0.000142 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.116 | 0.000287 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.116.1 | 0.000311 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.120 | 0.000037 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.13 | 0.000161 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.14 | 0.000088 |
N | 138 | A138del1 | gcC | gc- | 1 | 1 | AY.29 | 0.000016 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.29 | 0.000016 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.34 | 0.000097 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.37 | 0.000316 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.39.1 | 0.00004 |
N | 138 | A138del | GCC | --- | 1 | 1 | AY.4 | 0.000002 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.42 | 0.00004 |
N | 138 | A138G | gCC | gGT | 1 | 1 | AY.44 | 0.000006 |
N | 138 | A138T | Gcc | Acc | 1 | 1 | AY.44 | 0.000006 |
N | 138 | A138A | gcC | gcA | 1 | 1 | AY.45 | 0.000122 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.46.4 | 0.000165 |
N | 138 | A138A | gcC | gcA | 1 | 1 | AY.46.6 | 0.000072 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.48 | 0.000465 |
N | 138 | A138A | gcC | gcA | 1 | 1 | AY.59 | 0.00053 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.64 | 0.000595 |
N | 138 | A138D | gCc | gAc | 1 | 1 | AY.67 | 0.000464 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.74 | 0.000116 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.75 | 0.000056 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.75.1 | 0.00018 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.9.1 | 0.000084 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.9.2 | 0.000037 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.93 | 0.000273 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.96 | 0.002075 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.98 | 0.000079 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | AY.98.1 | 0.000048 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.98.1 | 0.000048 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.99 | 0.001049 |
N | 138 | A138A | gcC | gcT | 1 | 1 | AY.99.2 | 0.000092 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B | 0.000128 |
N | 138 | A138D | gCc | gAc | 1 | 1 | B.1 | 0.000009 |
N | 138 | A138T | Gcc | Acc | 1 | 1 | B.1.1.161 | 0.003534 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.1.263 | 0.001558 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.1.279 | 0.001121 |
N | 138 | A138T | Gcc | Acc | 1 | 1 | B.1.1.28 | 0.000311 |
N | 138 | A138S | GCc | AGc | 1 | 1 | B.1.1.28 | 0.000311 |
N | 138 | A138G | gCc | gGc | 1 | 1 | B.1.1.28 | 0.000311 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.1.301 | 0.001179 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.1.318 | 0.000302 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.1.318 | 0.000302 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.1.376 | 0.005952 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.1.409 | 0.002833 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.1.416 | 0.000905 |
N | 138 | A138del | GCC | --- | 1 | 1 | B.1.1.420 | 0.001006 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.1.519 | 0.00004 |
N | 138 | A138T | Gcc | Acc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 138 | A138V | gCc | gTc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.177.4 | 0.000211 |
N | 138 | A138G | gCc | gGc | 1 | 1 | B.1.177.63 | 0.002703 |
N | 138 | A138del | GCC | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 138 | A138P | Gcc | Ccc | 1 | 1 | B.1.2 | 0.000009 |
N | 138 | A138G | gCc | gGc | 1 | 1 | B.1.221 | 0.000071 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.227 | 0.047619 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.234 | 0.000132 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.258.17 | 0.000104 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.340 | 0.004292 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.351 | 0.00003 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.351 | 0.00003 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.351.2 | 0.000303 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.36.29 | 0.000517 |
N | 138 | A138A | gcC | gcA | 1 | 1 | B.1.369 | 0.000285 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.369 | 0.000285 |
N | 138 | A138del | GCC | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.428 | 0.00102 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.466.2 | 0.000391 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.499 | 0.00105 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.525 | 0.000113 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.525 | 0.000113 |
N | 138 | A138V | gCc | gTc | 1 | 1 | B.1.526 | 0.000024 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.564 | 0.000426 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.576 | 0.000907 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.596 | 0.000087 |
N | 138 | A138T | Gcc | Acc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 138 | A138V | gCc | gTc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.621 | 0.000089 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.627 | 0.00202 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | B.1.634 | 0.003425 |
N | 138 | A138A | gcC | gcT | 1 | 1 | B.1.93 | 0.000934 |
N | 138 | A138A | gcC | gcT | 1 | 1 | C.36.1 | 0.004149 |
N | 138 | A138A | gcC | gcT | 1 | 1 | D.2 | 0.000075 |
N | 138 | A138A | gcC | gcT | 1 | 1 | P.1.1 | 0.000318 |
N | 138 | A138A | gcC | gcT | 1 | 1 | P.1.14 | 0.000048 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | P.1.17 | 0.000162 |
N | 138 | A138A | gcC | gcT | 1 | 1 | P.1.2 | 0.001156 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | Q.1 | 0.000126 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | Q.4 | 0.000455 |
N | 138 | A138S | Gcc | Tcc | 1 | 1 | W.4 | 0.001351 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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