CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 13 | P13L | nonsyn | cCc | cTc | 34360 | 33734 | 0.981781 | 28310-28312 | |
N | 13 | P13L | nonsyn | cCC | cTT | 34360 | 626 | 0.0182189 | 28310-28312 | |
N | 13 | P13P | syn | ccC | ccT | 9419 | 8303 | 0.881516 | 28310-28312 | |
N | 13 | P13P | syn | ccC | ccA | 9419 | 1025 | 0.108823 | 28310-28312 | |
N | 13 | P13P | syn | ccC | ccG | 9419 | 91 | 0.00966132 | 28310-28312 | |
N | 13 | P13S | nonsyn | Ccc | Tcc | 7635 | 7624 | 0.998559 | 28310-28312 | |
N | 13 | P13S | nonsyn | CcC | TcT | 7635 | 11 | 0.00144073 | 28310-28312 | |
N | 13 | P13T | nonsyn | Ccc | Acc | 3639 | 3637 | 0.99945 | 28310-28312 | |
N | 13 | P13T | nonsyn | CcC | AcT | 3639 | 2 | 0.000549602 | 28310-28312 | |
N | 13 | P13R | nonsyn | cCc | cGc | 302 | 301 | 0.996689 | 28310-28312 | |
N | 13 | P13R | nonsyn | cCC | cGA | 302 | 1 | 0.00331126 | 28310-28312 | |
N | 13 | P13H | nonsyn | cCc | cAc | 103 | 103 | 1 | 28310-28312 | |
N | 13 | P13del | del | CCC | --- | 84 | 84 | 1 | 28310-28312 | |
N | 13 | P13del1 | del | Ccc | -cc | 83 | 80 | 0.963855 | 28310-28312 | |
N | 13 | P13del1 | del | CCC | -NN | 83 | 3 | 0.0361446 | 28310-28312 | |
N | 13 | P13I | nonsyn | CCc | ATc | 67 | 66 | 0.985075 | 28310-28312 | |
N | 13 | P13I | nonsyn | CCC | ATT | 67 | 1 | 0.0149254 | 28310-28312 | |
N | 13 | P13F | nonsyn | CCc | TTc | 42 | 42 | 1 | 28310-28312 | |
N | 13 | P13A | nonsyn | Ccc | Gcc | 5 | 5 | 1 | 28310-28312 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 13 | P13L | cCc | cTc | 33734 | 34360 | All | 0.006452 |
N | 13 | P13L | cCC | cTT | 626 | 34360 | All | 0.00012 |
N | 13 | P13L | cCc | cTc | 12624 | 13189 | B.1.526 | 0.296721 |
N | 13 | P13L | cCC | cTT | 565 | 13189 | B.1.526 | 0.01328 |
N | 13 | P13P | ccC | ccT | 8303 | 9419 | All | 0.001588 |
N | 13 | P13P | ccC | ccA | 1025 | 9419 | All | 0.000196 |
N | 13 | P13P | ccC | ccG | 91 | 9419 | All | 0.000017 |
N | 13 | P13L | cCc | cTc | 8454 | 8477 | C.37 | 0.981198 |
N | 13 | P13L | cCC | cTT | 23 | 8477 | C.37 | 0.002669 |
N | 13 | P13S | Ccc | Tcc | 7624 | 7635 | All | 0.001458 |
N | 13 | P13S | CcC | TcT | 11 | 7635 | All | 0.000002 |
N | 13 | P13T | Ccc | Acc | 3637 | 3639 | All | 0.000696 |
N | 13 | P13T | CcC | AcT | 2 | 3639 | All | 0 |
N | 13 | P13P | ccC | ccT | 2462 | 2486 | B.1.1.7 | 0.002204 |
N | 13 | P13P | ccC | ccG | 21 | 2486 | B.1.1.7 | 0.000019 |
N | 13 | P13P | ccC | ccA | 3 | 2486 | B.1.1.7 | 0.000003 |
N | 13 | P13P | ccC | ccT | 1117 | 2020 | AY.4 | 0.001739 |
N | 13 | P13P | ccC | ccA | 901 | 2020 | AY.4 | 0.001402 |
N | 13 | P13P | ccC | ccG | 2 | 2020 | AY.4 | 0.000003 |
N | 13 | P13S | Ccc | Tcc | 1962 | 1968 | B.1.351 | 0.058323 |
N | 13 | P13S | CcC | TcT | 6 | 1968 | B.1.351 | 0.000178 |
N | 13 | P13L | cCc | cTc | 1558 | 1558 | B.1.619.1 | 0.999359 |
N | 13 | P13T | Ccc | Acc | 1500 | 1500 | B.1.177.16 | 0.996678 |
N | 13 | P13S | Ccc | Tcc | 1160 | 1160 | B.1.1.7 | 0.001038 |
N | 13 | P13P | ccC | ccT | 1145 | 1145 | AY.23 | 0.079863 |
N | 13 | P13L | cCc | cTc | 1116 | 1116 | B.1.619 | 0.972125 |
N | 13 | P13L | cCc | cTc | 1055 | 1055 | B.6.6 | 0.937778 |
N | 13 | P13L | cCc | cTc | 1027 | 1032 | B.6 | 0.934486 |
N | 13 | P13L | cCC | cTT | 5 | 1032 | B.6 | 0.00455 |
N | 13 | P13S | Ccc | Tcc | 987 | 988 | B.1.1.420 | 0.992958 |
N | 13 | P13S | CcC | TcT | 1 | 988 | B.1.1.420 | 0.001006 |
N | 13 | P13L | cCc | cTc | 858 | 858 | B.1.2 | 0.007555 |
N | 13 | P13L | cCc | cTc | 592 | 592 | A.2.2 | 1 |
N | 13 | P13S | Ccc | Tcc | 566 | 566 | B.1 | 0.005184 |
N | 13 | P13L | cCc | cTc | 450 | 450 | AY.26 | 0.01274 |
N | 13 | P13L | cCc | cTc | 437 | 437 | B.1.1.7 | 0.000391 |
N | 13 | P13L | cCc | cTc | 409 | 410 | B.1 | 0.003746 |
N | 13 | P13L | cCC | cTT | 1 | 410 | B.1 | 0.000009 |
N | 13 | P13L | cCc | cTc | 371 | 371 | C.37.1 | 0.971204 |
N | 13 | P13L | cCc | cTc | 330 | 330 | B.1.243 | 0.022963 |
N | 13 | P13P | ccC | ccT | 319 | 330 | P.1 | 0.005026 |
N | 13 | P13P | ccC | ccA | 7 | 330 | P.1 | 0.00011 |
N | 13 | P13P | ccC | ccG | 4 | 330 | P.1 | 0.000063 |
N | 13 | P13P | ccC | ccT | 322 | 327 | AY.44 | 0.00196 |
N | 13 | P13P | ccC | ccA | 5 | 327 | AY.44 | 0.00003 |
N | 13 | P13L | cCc | cTc | 324 | 324 | B.1.241 | 0.262987 |
N | 13 | P13R | cCc | cGc | 301 | 302 | All | 0.000058 |
N | 13 | P13R | cCC | cGA | 1 | 302 | All | 0 |
N | 13 | P13R | cCc | cGc | 248 | 248 | B.1.595 | 0.064718 |
N | 13 | P13S | Ccc | Tcc | 246 | 246 | AY.91.1 | 1 |
N | 13 | P13S | Ccc | Tcc | 240 | 240 | AY.39 | 0.005931 |
N | 13 | P13L | cCc | cTc | 235 | 235 | AY.4 | 0.000366 |
N | 13 | P13L | cCc | cTc | 226 | 226 | C.1.2 | 0.961702 |
N | 13 | P13L | cCc | cTc | 222 | 222 | P.7 | 0.969432 |
N | 13 | P13P | ccC | ccT | 199 | 219 | B.1.617.2 | 0.000749 |
N | 13 | P13P | ccC | ccA | 18 | 219 | B.1.617.2 | 0.000068 |
N | 13 | P13P | ccC | ccG | 2 | 219 | B.1.617.2 | 0.000008 |
N | 13 | P13T | Ccc | Acc | 218 | 218 | AY.3 | 0.002168 |
N | 13 | P13T | Ccc | Acc | 218 | 218 | AY.4 | 0.000339 |
N | 13 | P13S | Ccc | Tcc | 213 | 213 | B.1.1.240 | 1 |
N | 13 | P13L | cCc | cTc | 213 | 213 | B.1.351 | 0.006332 |
N | 13 | P13T | Ccc | Acc | 196 | 196 | B.1.2 | 0.001726 |
N | 13 | P13P | ccC | ccT | 182 | 182 | AY.68 | 0.049822 |
N | 13 | P13L | cCc | cTc | 180 | 181 | B.1.1 | 0.003265 |
N | 13 | P13L | cCC | cTT | 1 | 181 | B.1.1 | 0.000018 |
N | 13 | P13T | Ccc | Acc | 180 | 180 | B.1.1.7 | 0.000161 |
N | 13 | P13T | Ccc | Acc | 173 | 173 | B.1.617.2 | 0.000651 |
N | 13 | P13S | Ccc | Tcc | 167 | 167 | AY.4 | 0.00026 |
N | 13 | P13P | ccC | ccT | 160 | 160 | AY.74 | 0.018504 |
N | 13 | P13P | ccC | ccT | 155 | 157 | AY.103 | 0.000962 |
N | 13 | P13P | ccC | ccA | 2 | 157 | AY.103 | 0.000012 |
N | 13 | P13P | ccC | ccT | 153 | 154 | AY.25 | 0.00092 |
N | 13 | P13P | ccC | ccG | 1 | 154 | AY.25 | 0.000006 |
N | 13 | P13L | cCc | cTc | 145 | 145 | AY.25 | 0.000872 |
N | 13 | P13L | cCc | cTc | 143 | 143 | P.1 | 0.002253 |
N | 13 | P13S | Ccc | Tcc | 132 | 132 | B.1.1 | 0.002395 |
N | 13 | P13S | Ccc | Tcc | 123 | 123 | B.1.2 | 0.001083 |
N | 13 | P13L | cCc | cTc | 121 | 121 | AY.44 | 0.000736 |
N | 13 | P13L | cCc | cTc | 121 | 121 | B.6.8 | 1 |
N | 13 | P13L | cCc | cTc | 121 | 121 | C.38 | 0.975806 |
N | 13 | P13S | Ccc | Tcc | 120 | 120 | AY.44 | 0.00073 |
N | 13 | P13P | ccC | ccT | 111 | 112 | AY.3 | 0.001104 |
N | 13 | P13P | ccC | ccA | 1 | 112 | AY.3 | 0.00001 |
N | 13 | P13L | cCc | cTc | 107 | 107 | AP.1 | 0.160661 |
N | 13 | P13L | cCc | cTc | 79 | 104 | B.1.617.2 | 0.000297 |
N | 13 | P13L | cCC | cTT | 25 | 104 | B.1.617.2 | 0.000094 |
N | 13 | P13H | cCc | cAc | 103 | 103 | All | 0.00002 |
N | 13 | P13S | Ccc | Tcc | 94 | 94 | B.1.617.2 | 0.000354 |
N | 13 | P13P | ccC | ccT | 81 | 85 | AY.102 | 0.002148 |
N | 13 | P13P | ccC | ccA | 3 | 85 | AY.102 | 0.00008 |
N | 13 | P13P | ccC | ccG | 1 | 85 | AY.102 | 0.000027 |
N | 13 | P13L | cCc | cTc | 85 | 85 | B.1.177 | 0.001119 |
N | 13 | P13del | CCC | --- | 84 | 84 | All | 0.000016 |
N | 13 | P13del1 | Ccc | -cc | 80 | 83 | All | 0.000015 |
N | 13 | P13del1 | CCC | -NN | 3 | 83 | All | 0.000001 |
N | 13 | P13T | Ccc | Acc | 83 | 83 | AY.103 | 0.000515 |
N | 13 | P13P | ccC | ccT | 78 | 79 | B.1.429 | 0.001835 |
N | 13 | P13P | ccC | ccG | 1 | 79 | B.1.429 | 0.000024 |
N | 13 | P13S | Ccc | Tcc | 77 | 77 | AY.103 | 0.000478 |
N | 13 | P13L | cCc | cTc | 77 | 77 | B.1.1.28 | 0.023965 |
N | 13 | P13S | Ccc | Tcc | 76 | 76 | B.1.617.1 | 0.009801 |
N | 13 | P13L | cCc | cTc | 75 | 75 | B.1.258 | 0.004991 |
N | 13 | P13S | Ccc | Tcc | 73 | 73 | AY.43 | 0.000323 |
N | 13 | P13P | ccC | ccT | 68 | 70 | B.1.1 | 0.001234 |
N | 13 | P13P | ccC | ccG | 1 | 70 | B.1.1 | 0.000018 |
N | 13 | P13P | ccC | ccA | 1 | 70 | B.1.1 | 0.000018 |
N | 13 | P13L | cCc | cTc | 68 | 68 | B.1.243.2 | 0.985507 |
N | 13 | P13I | CCc | ATc | 66 | 67 | All | 0.000013 |
N | 13 | P13I | CCC | ATT | 1 | 67 | All | 0 |
N | 13 | P13P | ccC | ccT | 62 | 64 | AY.43 | 0.000275 |
N | 13 | P13P | ccC | ccG | 1 | 64 | AY.43 | 0.000004 |
N | 13 | P13P | ccC | ccA | 1 | 64 | AY.43 | 0.000004 |
N | 13 | P13L | cCc | cTc | 63 | 63 | B.1.1.284 | 0.006766 |
N | 13 | P13S | Ccc | Tcc | 63 | 63 | B.1.160 | 0.001965 |
N | 13 | P13S | Ccc | Tcc | 63 | 63 | C.26 | 0.463235 |
N | 13 | P13P | ccC | ccT | 57 | 62 | B.1 | 0.000522 |
N | 13 | P13P | ccC | ccA | 4 | 62 | B.1 | 0.000037 |
N | 13 | P13P | ccC | ccG | 1 | 62 | B.1 | 0.000009 |
N | 13 | P13P | ccC | ccT | 62 | 62 | B.1.177 | 0.000816 |
N | 13 | P13T | Ccc | Acc | 62 | 62 | B.1.221 | 0.004404 |
N | 13 | P13S | Ccc | Tcc | 61 | 61 | AY.29 | 0.000962 |
N | 13 | P13P | ccC | ccT | 39 | 61 | AY.5 | 0.000805 |
N | 13 | P13P | ccC | ccA | 22 | 61 | AY.5 | 0.000454 |
N | 13 | P13del1 | Ccc | -cc | 61 | 61 | B.1.1.7 | 0.000055 |
N | 13 | P13L | cCc | cTc | 61 | 61 | B.1.36.23 | 1 |
N | 13 | P13P | ccC | ccT | 60 | 60 | B.1.160 | 0.001871 |
N | 13 | P13I | CCc | ATc | 60 | 60 | P.1.7 | 0.019157 |
N | 13 | P13P | ccC | ccT | 52 | 58 | B.1.2 | 0.000458 |
N | 13 | P13P | ccC | ccA | 3 | 58 | B.1.2 | 0.000026 |
N | 13 | P13P | ccC | ccG | 3 | 58 | B.1.2 | 0.000026 |
N | 13 | P13P | ccC | ccT | 56 | 56 | AY.45 | 0.006814 |
N | 13 | P13T | Ccc | Acc | 56 | 56 | P.1 | 0.000882 |
N | 13 | P13S | Ccc | Tcc | 54 | 54 | B.1.562 | 1 |
N | 13 | P13L | cCc | cTc | 50 | 50 | AY.107 | 0.023299 |
N | 13 | P13P | ccC | ccT | 50 | 50 | AY.117 | 0.004226 |
N | 13 | P13L | cCc | cTc | 49 | 49 | B.1.118 | 0.328859 |
N | 13 | P13T | Ccc | Acc | 49 | 49 | B.1.160 | 0.001528 |
N | 13 | P13P | ccC | ccT | 46 | 48 | AY.39 | 0.001137 |
N | 13 | P13P | ccC | ccG | 1 | 48 | AY.39 | 0.000025 |
N | 13 | P13P | ccC | ccA | 1 | 48 | AY.39 | 0.000025 |
N | 13 | P13S | Ccc | Tcc | 48 | 48 | B.1.177 | 0.000632 |
N | 13 | P13P | ccC | ccT | 46 | 47 | AY.4.2 | 0.000998 |
N | 13 | P13P | ccC | ccA | 1 | 47 | AY.4.2 | 0.000022 |
N | 13 | P13P | ccC | ccT | 45 | 46 | AY.7.1 | 0.005072 |
N | 13 | P13P | ccC | ccG | 1 | 46 | AY.7.1 | 0.000113 |
N | 13 | P13L | cCc | cTc | 45 | 45 | AY.42 | 0.00181 |
N | 13 | P13S | Ccc | Tcc | 44 | 44 | AY.26 | 0.001246 |
N | 13 | P13P | ccC | ccT | 43 | 43 | AY.27 | 0.002783 |
N | 13 | P13L | cCc | cTc | 41 | 43 | AY.43 | 0.000182 |
N | 13 | P13L | cCC | cTT | 2 | 43 | AY.43 | 0.000009 |
N | 13 | P13P | ccC | ccT | 43 | 43 | B.1.416.1 | 0.067187 |
N | 13 | P13L | cCc | cTc | 43 | 43 | B.1.429 | 0.001012 |
N | 13 | P13F | CCc | TTc | 42 | 42 | All | 0.000008 |
N | 13 | P13S | Ccc | Tcc | 42 | 42 | AY.3 | 0.000418 |
N | 13 | P13T | Ccc | Acc | 42 | 42 | P.2 | 0.007839 |
N | 13 | P13T | Ccc | Acc | 41 | 41 | AY.33 | 0.002738 |
N | 13 | P13T | Ccc | Acc | 41 | 41 | B.1 | 0.000376 |
N | 13 | P13T | Ccc | Acc | 41 | 41 | P.1.15 | 0.009526 |
N | 13 | P13L | cCc | cTc | 40 | 40 | AY.103 | 0.000248 |
N | 13 | P13S | Ccc | Tcc | 40 | 40 | AY.4.5 | 0.0043 |
N | 13 | P13P | ccC | ccG | 39 | 39 | B.1.126 | 0.049745 |
N | 13 | P13P | ccC | ccT | 37 | 38 | AY.9.1 | 0.003098 |
N | 13 | P13P | ccC | ccG | 1 | 38 | AY.9.1 | 0.000084 |
N | 13 | P13L | cCc | cTc | 38 | 38 | B.1.239 | 0.046398 |
N | 13 | P13L | cCc | cTc | 38 | 38 | B.6.1 | 1 |
N | 13 | P13S | Ccc | Tcc | 37 | 37 | B.1.427 | 0.001868 |
N | 13 | P13L | cCc | cTc | 37 | 37 | B.6.3 | 0.973684 |
N | 13 | P13L | cCc | cTc | 37 | 37 | C.36.3.1 | 0.100543 |
N | 13 | P13T | Ccc | Acc | 36 | 36 | AY.26 | 0.001019 |
N | 13 | P13S | Ccc | Tcc | 36 | 36 | AY.85 | 0.015378 |
N | 13 | P13L | cCc | cTc | 35 | 35 | B.3.1 | 0.058043 |
N | 13 | P13P | ccC | ccT | 31 | 34 | AY.20 | 0.001205 |
N | 13 | P13P | ccC | ccA | 2 | 34 | AY.20 | 0.000078 |
N | 13 | P13P | ccC | ccG | 1 | 34 | AY.20 | 0.000039 |
N | 13 | P13P | ccC | ccT | 34 | 34 | AY.52 | 0.027687 |
N | 13 | P13S | Ccc | Tcc | 33 | 33 | AY.25 | 0.000198 |
N | 13 | P13T | Ccc | Acc | 33 | 33 | AY.44 | 0.000201 |
N | 13 | P13P | ccC | ccT | 33 | 33 | Q.3 | 0.004786 |
N | 13 | P13S | Ccc | Tcc | 29 | 32 | P.1 | 0.000457 |
N | 13 | P13S | CcC | TcT | 3 | 32 | P.1 | 0.000047 |
N | 13 | P13L | cCc | cTc | 30 | 30 | B.1.1.222 | 0.00612 |
N | 13 | P13L | cCc | cTc | 30 | 30 | B.1.427 | 0.001515 |
N | 13 | P13P | ccC | ccT | 29 | 29 | AY.34.1 | 0.014788 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B | 0.003579 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B.1.1.519 | 0.001112 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B.1.1.70 | 0.00955 |
N | 13 | P13L | cCc | cTc | 28 | 28 | B.1.160 | 0.000873 |
N | 13 | P13S | Ccc | Tcc | 28 | 28 | B.1.36.17 | 0.013834 |
N | 13 | P13T | Ccc | Acc | 28 | 28 | B.1.427 | 0.001414 |
N | 13 | P13T | Ccc | Acc | 28 | 28 | B.1.429 | 0.000659 |
N | 13 | P13L | cCc | cTc | 28 | 28 | R.1 | 0.00252 |
N | 13 | P13L | cCc | cTc | 27 | 27 | B.1.221 | 0.001918 |
N | 13 | P13T | Ccc | Acc | 27 | 27 | B.1.258.22 | 0.072 |
N | 13 | P13L | cCc | cTc | 27 | 27 | B.1.36.29 | 0.013968 |
N | 13 | P13S | Ccc | Tcc | 26 | 26 | B.1.1.328 | 0.440678 |
N | 13 | P13T | Ccc | Acc | 25 | 25 | AY.43 | 0.000111 |
N | 13 | P13P | ccC | ccA | 23 | 25 | B.1.243 | 0.0016 |
N | 13 | P13P | ccC | ccT | 2 | 25 | B.1.243 | 0.000139 |
N | 13 | P13P | ccC | ccT | 24 | 24 | AY.118 | 0.001504 |
N | 13 | P13P | ccC | ccT | 24 | 24 | AY.33 | 0.001603 |
N | 13 | P13T | Ccc | Acc | 24 | 24 | B.1.177 | 0.000316 |
N | 13 | P13P | ccC | ccT | 23 | 23 | AY.29 | 0.000363 |
N | 13 | P13T | Ccc | Acc | 23 | 23 | B.1.1.222 | 0.004692 |
N | 13 | P13S | Ccc | Tcc | 23 | 23 | B.1.1.242 | 1 |
N | 13 | P13S | Ccc | Tcc | 23 | 23 | B.1.36 | 0.003356 |
N | 13 | P13S | Ccc | Tcc | 22 | 22 | AJ.1 | 1 |
N | 13 | P13P | ccC | ccT | 22 | 22 | AY.26 | 0.000623 |
N | 13 | P13P | ccC | ccT | 21 | 22 | B.1.1.519 | 0.000834 |
N | 13 | P13P | ccC | ccG | 1 | 22 | B.1.1.519 | 0.00004 |
N | 13 | P13S | Ccc | Tcc | 22 | 22 | B.1.1.70 | 0.007503 |
N | 13 | P13L | cCc | cTc | 22 | 22 | B.6.4 | 1 |
N | 13 | P13P | ccC | ccT | 21 | 21 | AY.120 | 0.000781 |
N | 13 | P13T | Ccc | Acc | 21 | 21 | AY.5 | 0.000434 |
N | 13 | P13S | Ccc | Tcc | 21 | 21 | B.1.1.519 | 0.000834 |
N | 13 | P13T | Ccc | Acc | 21 | 21 | B.1.351 | 0.000624 |
N | 13 | P13P | ccC | ccT | 20 | 21 | Q.8 | 0.003298 |
N | 13 | P13P | ccC | ccG | 1 | 21 | Q.8 | 0.000165 |
N | 13 | P13T | Ccc | Acc | 20 | 20 | A.1 | 0.005637 |
N | 13 | P13P | ccC | ccT | 20 | 20 | B.1.427 | 0.00101 |
N | 13 | P13L | cCc | cTc | 20 | 20 | B.1.617.1 | 0.002579 |
N | 13 | P13P | ccC | ccT | 19 | 19 | AY.9.2 | 0.000698 |
N | 13 | P13S | Ccc | Tcc | 19 | 19 | B.1.221 | 0.00135 |
N | 13 | P13H | cCc | cAc | 19 | 19 | B.1.433 | 0.060703 |
N | 13 | P13L | cCc | cTc | 19 | 19 | C.36.3 | 0.010777 |
N | 13 | P13F | CCc | TTc | 19 | 19 | C.37 | 0.002205 |
N | 13 | P13L | cCc | cTc | 18 | 18 | A | 0.006966 |
N | 13 | P13del | CCC | --- | 18 | 18 | AY.94 | 0.007968 |
N | 13 | P13L | cCc | cTc | 18 | 18 | B.1.1.33 | 0.007576 |
N | 13 | P13T | Ccc | Acc | 18 | 18 | B.1.139 | 0.013196 |
N | 13 | P13P | ccC | ccT | 18 | 18 | B.1.177.4 | 0.003799 |
N | 13 | P13L | cCc | cTc | 18 | 18 | B.1.621.1 | 0.009105 |
N | 13 | P13L | cCc | cTc | 17 | 17 | AY.27 | 0.0011 |
N | 13 | P13L | cCc | cTc | 17 | 17 | AY.3 | 0.000169 |
N | 13 | P13L | cCc | cTc | 17 | 17 | B.1.1.312 | 0.032505 |
N | 13 | P13L | cCc | cTc | 17 | 17 | B.1.214.2 | 0.010192 |
N | 13 | P13P | ccC | ccT | 17 | 17 | B.1.221 | 0.001208 |
N | 13 | P13T | Ccc | Acc | 17 | 17 | P.1.7 | 0.005428 |
N | 13 | P13P | ccC | ccT | 17 | 17 | P.2 | 0.003173 |
N | 13 | P13P | ccC | ccT | 16 | 16 | AY.111 | 0.00293 |
N | 13 | P13P | ccC | ccT | 15 | 16 | AY.119 | 0.00053 |
N | 13 | P13P | ccC | ccA | 1 | 16 | AY.119 | 0.000035 |
N | 13 | P13S | Ccc | Tcc | 16 | 16 | AY.4.2 | 0.000347 |
N | 13 | P13del | CCC | --- | 16 | 16 | AY.92 | 0.004596 |
N | 13 | P13P | ccC | ccT | 15 | 16 | AY.99.2 | 0.001382 |
N | 13 | P13P | ccC | ccG | 1 | 16 | AY.99.2 | 0.000092 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.1.303 | 0.044199 |
N | 13 | P13S | Ccc | Tcc | 16 | 16 | B.1.177.7 | 0.002638 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.234 | 0.002111 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.258.17 | 0.001664 |
N | 13 | P13S | Ccc | Tcc | 16 | 16 | B.1.429 | 0.000376 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.575 | 0.004854 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.1.637 | 0.001169 |
N | 13 | P13L | cCc | cTc | 16 | 16 | B.6.2 | 1 |
N | 13 | P13P | ccC | ccT | 16 | 16 | P.1.14 | 0.000765 |
N | 13 | P13H | cCc | cAc | 15 | 15 | AY.4 | 0.000023 |
N | 13 | P13T | Ccc | Acc | 15 | 15 | B.1.1.432 | 0.018987 |
N | 13 | P13S | Ccc | Tcc | 15 | 15 | B.1.1.526 | 0.053191 |
N | 13 | P13L | cCc | cTc | 15 | 15 | B.1.596 | 0.001307 |
N | 13 | P13L | cCc | cTc | 15 | 15 | P.1.14 | 0.000717 |
N | 13 | P13L | cCc | cTc | 11 | 14 | AY.102 | 0.000292 |
N | 13 | P13L | cCC | cTT | 3 | 14 | AY.102 | 0.00008 |
N | 13 | P13P | ccC | ccT | 14 | 14 | AY.116 | 0.004015 |
N | 13 | P13P | ccC | ccT | 14 | 14 | AY.39.1 | 0.000555 |
N | 13 | P13T | Ccc | Acc | 14 | 14 | B.1.1.306 | 0.006138 |
N | 13 | P13P | ccC | ccA | 13 | 14 | B.1.177.81 | 0.002461 |
N | 13 | P13P | ccC | ccT | 1 | 14 | B.1.177.81 | 0.000189 |
N | 13 | P13S | Ccc | Tcc | 14 | 14 | B.1.234 | 0.001847 |
N | 13 | P13R | cCc | cGc | 14 | 14 | B.1.258 | 0.000932 |
N | 13 | P13T | Ccc | Acc | 14 | 14 | B.1.396 | 0.00988 |
N | 13 | P13S | Ccc | Tcc | 14 | 14 | B.1.397 | 0.067961 |
N | 13 | P13T | Ccc | Acc | 14 | 14 | B.1.621 | 0.001239 |
N | 13 | P13P | ccC | ccT | 13 | 13 | AY.100 | 0.000598 |
N | 13 | P13H | cCc | cAc | 13 | 13 | AY.111 | 0.002381 |
N | 13 | P13T | Ccc | Acc | 13 | 13 | AY.35 | 0.00303 |
N | 13 | P13L | cCc | cTc | 13 | 13 | AY.47 | 0.000404 |
N | 13 | P13P | ccC | ccT | 13 | 13 | AY.75 | 0.000728 |
N | 13 | P13L | cCc | cTc | 13 | 13 | AY.75 | 0.000728 |
N | 13 | P13S | Ccc | Tcc | 13 | 13 | B.1.403 | 0.042484 |
N | 13 | P13L | cCc | cTc | 13 | 13 | B.1.621 | 0.001151 |
N | 13 | P13L | cCc | cTc | 13 | 13 | B.6.5 | 1 |
N | 13 | P13L | cCc | cTc | 13 | 13 | P.1.15 | 0.00302 |
N | 13 | P13S | Ccc | Tcc | 12 | 12 | AY.102 | 0.000318 |
N | 13 | P13L | cCc | cTc | 12 | 12 | AY.119 | 0.000424 |
N | 13 | P13P | ccC | ccT | 12 | 12 | AY.24 | 0.005172 |
N | 13 | P13T | Ccc | Acc | 12 | 12 | AY.25 | 0.000072 |
N | 13 | P13P | ccC | ccT | 12 | 12 | AY.42 | 0.000483 |
N | 13 | P13L | cCc | cTc | 12 | 12 | AY.85 | 0.005126 |
N | 13 | P13P | ccC | ccT | 12 | 12 | B.1.1.214 | 0.000665 |
N | 13 | P13S | Ccc | Tcc | 12 | 12 | B.1.243 | 0.000835 |
N | 13 | P13P | ccC | ccT | 12 | 12 | B.1.258.17 | 0.001248 |
N | 13 | P13T | Ccc | Acc | 12 | 12 | B.1.36 | 0.001751 |
N | 13 | P13P | ccC | ccT | 11 | 12 | B.1.526 | 0.000259 |
N | 13 | P13P | ccC | ccA | 1 | 12 | B.1.526 | 0.000024 |
N | 13 | P13L | cCc | cTc | 12 | 12 | B.1.623 | 0.006438 |
N | 13 | P13T | Ccc | Acc | 11 | 11 | AY.3.1 | 0.000938 |
N | 13 | P13S | Ccc | Tcc | 11 | 11 | AY.47 | 0.000342 |
N | 13 | P13L | cCc | cTc | 11 | 11 | AY.6 | 0.000452 |
N | 13 | P13L | cCc | cTc | 11 | 11 | AY.91 | 0.008035 |
N | 13 | P13S | Ccc | Tcc | 11 | 11 | B | 0.001406 |
N | 13 | P13L | cCc | cTc | 11 | 11 | B.1.1.318 | 0.003319 |
N | 13 | P13L | cCc | cTc | 11 | 11 | B.1.157 | 0.032836 |
N | 13 | P13S | Ccc | Tcc | 11 | 11 | B.1.258 | 0.000732 |
N | 13 | P13P | ccC | ccT | 10 | 10 | AY.121 | 0.001353 |
N | 13 | P13L | cCc | cTc | 10 | 10 | AY.16 | 0.003797 |
N | 13 | P13H | cCc | cAc | 10 | 10 | AY.25 | 0.00006 |
N | 13 | P13T | Ccc | Acc | 10 | 10 | AY.39 | 0.000247 |
N | 13 | P13L | cCc | cTc | 10 | 10 | AY.39 | 0.000247 |
N | 13 | P13P | ccC | ccT | 9 | 10 | AY.4.5 | 0.000967 |
N | 13 | P13P | ccC | ccA | 1 | 10 | AY.4.5 | 0.000107 |
N | 13 | P13P | ccC | ccT | 10 | 10 | AY.61 | 0.001048 |
N | 13 | P13T | Ccc | Acc | 10 | 10 | B | 0.001278 |
N | 13 | P13L | cCc | cTc | 10 | 10 | B.1.1.25 | 0.005685 |
N | 13 | P13S | Ccc | Tcc | 10 | 10 | B.1.1.28 | 0.003112 |
N | 13 | P13T | Ccc | Acc | 10 | 10 | B.1.1.28 | 0.003112 |
N | 13 | P13P | ccC | ccT | 9 | 10 | B.1.351 | 0.000268 |
N | 13 | P13P | ccC | ccG | 1 | 10 | B.1.351 | 0.00003 |
N | 13 | P13S | Ccc | Tcc | 10 | 10 | C.16 | 0.010604 |
N | 13 | P13L | cCc | cTc | 10 | 10 | D.5 | 0.049751 |
N | 13 | P13P | ccC | ccT | 9 | 9 | AU.1 | 0.011392 |
N | 13 | P13S | Ccc | Tcc | 9 | 9 | AY.100 | 0.000414 |
N | 13 | P13T | Ccc | Acc | 9 | 9 | AY.102 | 0.000239 |
N | 13 | P13P | ccC | ccT | 9 | 9 | AY.106 | 0.003014 |
N | 13 | P13P | ccC | ccT | 9 | 9 | AY.113 | 0.001282 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.23 | 0.000628 |
N | 13 | P13F | CCc | TTc | 9 | 9 | AY.25 | 0.000054 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.4.2.1 | 0.001341 |
N | 13 | P13P | ccC | ccT | 9 | 9 | AY.46.6 | 0.00065 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.5 | 0.000186 |
N | 13 | P13P | ccC | ccT | 9 | 9 | AY.6 | 0.00037 |
N | 13 | P13P | ccC | ccT | 9 | 9 | AY.75.1 | 0.001623 |
N | 13 | P13L | cCc | cTc | 9 | 9 | AY.9.1 | 0.000754 |
N | 13 | P13del | CCC | --- | 9 | 9 | AY.99.2 | 0.000829 |
N | 13 | P13P | ccC | ccT | 9 | 9 | B.1.1.311 | 0.003223 |
N | 13 | P13P | ccC | ccT | 9 | 9 | B.1.1.67 | 0.041096 |
N | 13 | P13L | cCc | cTc | 9 | 9 | B.1.177.7 | 0.001484 |
N | 13 | P13P | ccC | ccT | 9 | 9 | B.1.258 | 0.000599 |
N | 13 | P13S | Ccc | Tcc | 9 | 9 | B.1.40 | 0.176471 |
N | 13 | P13L | cCc | cTc | 9 | 9 | B.1.609 | 0.004314 |
N | 13 | P13S | Ccc | Tcc | 9 | 9 | R.1 | 0.00081 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | AY.119 | 0.000282 |
N | 13 | P13T | Ccc | Acc | 8 | 8 | AY.13 | 0.001288 |
N | 13 | P13T | Ccc | Acc | 7 | 8 | AY.24 | 0.003017 |
N | 13 | P13T | CcC | AcT | 1 | 8 | AY.24 | 0.000431 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | AY.5 | 0.000165 |
N | 13 | P13T | Ccc | Acc | 8 | 8 | B.1.1 | 0.000145 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | B.1.1.214 | 0.000444 |
N | 13 | P13L | cCc | cTc | 8 | 8 | B.1.1.216 | 0.007124 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | B.1.1.244 | 0.123077 |
N | 13 | P13R | cCc | cGc | 8 | 8 | B.1.2 | 0.00007 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | B.1.509 | 0.006926 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | B.1.525 | 0.000905 |
N | 13 | P13T | Ccc | Acc | 8 | 8 | B.1.525 | 0.000905 |
N | 13 | P13T | Ccc | Acc | 8 | 8 | B.1.588 | 0.007279 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | B.1.609 | 0.003835 |
N | 13 | P13T | Ccc | Acc | 8 | 8 | B.1.617.1 | 0.001032 |
N | 13 | P13P | ccC | ccT | 8 | 8 | B.1.637 | 0.000585 |
N | 13 | P13S | Ccc | Tcc | 8 | 8 | P.1.15 | 0.001859 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.110 | 0.000789 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.2 | 0.002493 |
N | 13 | P13P | ccC | ccT | 7 | 7 | AY.3.1 | 0.000597 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.4.2 | 0.000152 |
N | 13 | P13L | cCc | cTc | 7 | 7 | AY.9.2 | 0.000257 |
N | 13 | P13R | cCc | cGc | 6 | 7 | B.1 | 0.000055 |
N | 13 | P13R | cCC | cGA | 1 | 7 | B.1 | 0.000009 |
N | 13 | P13P | ccC | ccT | 6 | 7 | B.1.1.1 | 0.00196 |
N | 13 | P13P | ccC | ccA | 1 | 7 | B.1.1.1 | 0.000327 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.1.220 | 0.013011 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.1.434 | 0.00244 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.1.63 | 0.002701 |
N | 13 | P13S | Ccc | Tcc | 7 | 7 | B.1.177.56 | 0.004673 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.177.73 | 0.003964 |
N | 13 | P13T | Ccc | Acc | 7 | 7 | B.1.177.81 | 0.001325 |
N | 13 | P13P | ccC | ccT | 7 | 7 | B.1.36.29 | 0.003621 |
N | 13 | P13P | ccC | ccT | 7 | 7 | B.1.575 | 0.002124 |
N | 13 | P13P | ccC | ccT | 5 | 7 | B.1.617.1 | 0.000645 |
N | 13 | P13P | ccC | ccA | 2 | 7 | B.1.617.1 | 0.000258 |
N | 13 | P13H | cCc | cAc | 7 | 7 | B.1.617.2 | 0.000026 |
N | 13 | P13L | cCc | cTc | 7 | 7 | B.1.632 | 0.04698 |
N | 13 | P13P | ccC | ccT | 7 | 7 | P.1.10 | 0.001886 |
N | 13 | P13S | Ccc | Tcc | 6 | 6 | A.2.5 | 0.002994 |
N | 13 | P13S | Ccc | Tcc | 5 | 6 | AY.23 | 0.000349 |
N | 13 | P13S | CcC | TcT | 1 | 6 | AY.23 | 0.00007 |
N | 13 | P13P | ccC | ccT | 6 | 6 | AY.32 | 0.003195 |
N | 13 | P13P | ccC | ccT | 6 | 6 | AY.34 | 0.000582 |
N | 13 | P13del | CCC | --- | 6 | 6 | AY.43 | 0.000027 |
N | 13 | P13P | ccC | ccT | 6 | 6 | AY.57 | 0.003937 |
N | 13 | P13T | Ccc | Acc | 6 | 6 | AY.65 | 0.003198 |
N | 13 | P13P | ccC | ccT | 6 | 6 | AY.70 | 0.001251 |
N | 13 | P13T | Ccc | Acc | 6 | 6 | AY.75 | 0.000336 |
N | 13 | P13P | ccC | ccT | 6 | 6 | AY.98.1 | 0.000291 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.1.198 | 0.008811 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.1.291 | 0.004454 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.1.432 | 0.007595 |
N | 13 | P13H | cCc | cAc | 6 | 6 | B.1.1.7 | 0.000005 |
N | 13 | P13S | Ccc | Tcc | 6 | 6 | B.1.258.17 | 0.000624 |
N | 13 | P13L | cCc | cTc | 6 | 6 | B.1.369 | 0.001711 |
N | 13 | P13P | ccC | ccT | 6 | 6 | B.1.621 | 0.000531 |
N | 13 | P13R | cCc | cGc | 6 | 6 | B.4 | 0.013245 |
N | 13 | P13S | Ccc | Tcc | 6 | 6 | P.1.4 | 0.005859 |
N | 13 | P13P | ccC | ccT | 6 | 6 | Q.1 | 0.000758 |
N | 13 | P13A | Ccc | Gcc | 5 | 5 | All | 0.000001 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.100 | 0.00023 |
N | 13 | P13T | Ccc | Acc | 5 | 5 | AY.108 | 0.005513 |
N | 13 | P13P | ccC | ccT | 4 | 5 | AY.110 | 0.000451 |
N | 13 | P13P | ccC | ccG | 1 | 5 | AY.110 | 0.000113 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | AY.120 | 0.000186 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | AY.13 | 0.000805 |
N | 13 | P13P | ccC | ccT | 5 | 5 | AY.14 | 0.00044 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.20 | 0.000194 |
N | 13 | P13T | Ccc | Acc | 5 | 5 | AY.20 | 0.000194 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.33 | 0.000334 |
N | 13 | P13P | ccC | ccT | 5 | 5 | AY.36 | 0.000741 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | AY.42 | 0.000201 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | AY.45 | 0.000608 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | AY.46 | 0.00052 |
N | 13 | P13T | Ccc | Acc | 5 | 5 | AY.46 | 0.00052 |
N | 13 | P13L | cCc | cTc | 5 | 5 | AY.61 | 0.000524 |
N | 13 | P13T | Ccc | Acc | 4 | 5 | AY.62 | 0.001743 |
N | 13 | P13T | CcC | AcT | 1 | 5 | AY.62 | 0.000436 |
N | 13 | P13P | ccC | ccT | 4 | 5 | AY.69 | 0.000747 |
N | 13 | P13P | ccC | ccG | 1 | 5 | AY.69 | 0.000187 |
N | 13 | P13T | Ccc | Acc | 5 | 5 | AY.89 | 0.02451 |
N | 13 | P13P | ccC | ccT | 5 | 5 | AY.9 | 0.000338 |
N | 13 | P13P | ccC | ccT | 5 | 5 | AY.91 | 0.003652 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | AY.93 | 0.001365 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.1.1 | 0.001633 |
N | 13 | P13P | ccC | ccT | 5 | 5 | B.1.1.258 | 0.016287 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | B.1.1.277 | 0.003794 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.1.372 | 0.003444 |
N | 13 | P13T | Ccc | Acc | 5 | 5 | B.1.1.434 | 0.001743 |
N | 13 | P13P | ccC | ccT | 5 | 5 | B.1.177.21 | 0.000382 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | B.1.177.35 | 0.003455 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.177.81 | 0.000947 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | B.1.177.87 | 0.003639 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.210 | 0.010661 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.36.1 | 0.005701 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | B.1.36.7 | 0.02 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.465 | 0.019011 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.468 | 0.028571 |
N | 13 | P13P | ccC | ccT | 4 | 5 | B.1.517 | 0.001708 |
N | 13 | P13P | ccC | ccA | 1 | 5 | B.1.517 | 0.000427 |
N | 13 | P13T | Ccc | Acc | 5 | 5 | B.1.526 | 0.000118 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | B.1.526 | 0.000118 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.544 | 0.03012 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.576 | 0.004533 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.1.578 | 0.089286 |
N | 13 | P13L | cCc | cTc | 5 | 5 | B.41 | 0.04 |
N | 13 | P13L | cCc | cTc | 5 | 5 | C.16 | 0.005302 |
N | 13 | P13S | Ccc | Tcc | 5 | 5 | C.36 | 0.004554 |
N | 13 | P13L | cCc | cTc | 5 | 5 | P.1.12 | 0.00242 |
N | 13 | P13P | ccC | ccT | 5 | 5 | P.1.12 | 0.00242 |
N | 13 | P13T | Ccc | Acc | 5 | 5 | P.1.17 | 0.000809 |
N | 13 | P13L | cCc | cTc | 5 | 5 | P.5 | 0.068493 |
N | 13 | P13P | ccC | ccT | 4 | 4 | A | 0.001548 |
N | 13 | P13P | ccC | ccT | 4 | 4 | A.21 | 0.01108 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | AY.117 | 0.000338 |
N | 13 | P13T | Ccc | Acc | 4 | 4 | AY.117 | 0.000338 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.117 | 0.000338 |
N | 13 | P13P | ccC | ccT | 4 | 4 | AY.2 | 0.001425 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | AY.20 | 0.000155 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.29 | 0.000063 |
N | 13 | P13P | ccC | ccT | 4 | 4 | AY.30 | 0.001583 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | AY.32 | 0.00213 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | AY.33 | 0.000267 |
N | 13 | P13P | ccC | ccT | 4 | 4 | AY.4.2.1 | 0.000596 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.40 | 0.003857 |
N | 13 | P13H | cCc | cAc | 4 | 4 | AY.44 | 0.000024 |
N | 13 | P13P | ccC | ccT | 4 | 4 | AY.46 | 0.000416 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.5.4 | 0.001107 |
N | 13 | P13T | Ccc | Acc | 4 | 4 | AY.54 | 0.000381 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | AY.61 | 0.000419 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.65 | 0.002132 |
N | 13 | P13L | cCc | cTc | 4 | 4 | AY.69 | 0.000747 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | AY.75 | 0.000224 |
N | 13 | P13P | ccC | ccT | 4 | 4 | B.1.1.37 | 0.000771 |
N | 13 | P13T | Ccc | Acc | 4 | 4 | B.1.1.378 | 0.029197 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | B.1.1.409 | 0.011331 |
N | 13 | P13L | cCc | cTc | 4 | 4 | B.1.1.44 | 0.009639 |
N | 13 | P13del | CCC | --- | 4 | 4 | B.1.1.7 | 0.000004 |
N | 13 | P13T | Ccc | Acc | 4 | 4 | B.1.258 | 0.000266 |
N | 13 | P13P | ccC | ccT | 3 | 4 | B.1.311 | 0.000824 |
N | 13 | P13P | ccC | ccG | 1 | 4 | B.1.311 | 0.000275 |
N | 13 | P13L | cCc | cTc | 4 | 4 | B.1.36 | 0.000584 |
N | 13 | P13P | ccC | ccT | 4 | 4 | B.1.400 | 0.001716 |
N | 13 | P13L | cCc | cTc | 4 | 4 | B.1.400 | 0.001716 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | B.1.417 | 0.114286 |
N | 13 | P13S | Ccc | Tcc | 4 | 4 | B.1.527 | 0.014815 |
N | 13 | P13P | ccC | ccT | 4 | 4 | B.1.596 | 0.000349 |
N | 13 | P13L | cCc | cTc | 4 | 4 | D.2 | 0.0003 |
N | 13 | P13P | ccC | ccT | 4 | 4 | D.2 | 0.0003 |
N | 13 | P13L | cCc | cTc | 4 | 4 | P.1.17 | 0.000647 |
N | 13 | P13P | ccC | ccT | 3 | 3 | AD.2 | 0.000657 |
N | 13 | P13H | cCc | cAc | 3 | 3 | AY.103 | 0.000019 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.106 | 0.001005 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.106 | 0.001005 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.109 | 0.002219 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.111 | 0.000549 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.118 | 0.000188 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.120 | 0.000112 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.14 | 0.000264 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.34 | 0.000291 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.35 | 0.000699 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.36 | 0.000445 |
N | 13 | P13P | ccC | ccT | 2 | 3 | AY.37 | 0.000632 |
N | 13 | P13P | ccC | ccA | 1 | 3 | AY.37 | 0.000316 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.39.1 | 0.000119 |
N | 13 | P13del | CCC | --- | 3 | 3 | AY.4 | 0.000005 |
N | 13 | P13T | Ccc | Acc | 3 | 3 | AY.4.2 | 0.000065 |
N | 13 | P13P | ccC | ccT | 3 | 3 | AY.40 | 0.002893 |
N | 13 | P13T | Ccc | Acc | 3 | 3 | AY.42 | 0.000121 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.48 | 0.001395 |
N | 13 | P13P | ccC | ccT | 3 | 3 | AY.50 | 0.002398 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.54 | 0.000286 |
N | 13 | P13T | Ccc | Acc | 3 | 3 | AY.55 | 0.002752 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.59 | 0.001589 |
N | 13 | P13P | ccC | ccT | 3 | 3 | AY.59 | 0.001589 |
N | 13 | P13T | Ccc | Acc | 3 | 3 | AY.6 | 0.000123 |
N | 13 | P13L | cCc | cTc | 3 | 3 | AY.75.1 | 0.000541 |
N | 13 | P13P | ccC | ccA | 2 | 3 | AY.88 | 0.001768 |
N | 13 | P13P | ccC | ccT | 1 | 3 | AY.88 | 0.000884 |
N | 13 | P13P | ccC | ccT | 3 | 3 | AY.92 | 0.000862 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AY.98.1 | 0.000145 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | AZ.1 | 0.002602 |
N | 13 | P13H | cCc | cAc | 3 | 3 | B.1 | 0.000027 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.1.120 | 0.1 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.189 | 0.004539 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.1.222 | 0.000612 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.317 | 0.001235 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.1.348 | 0.002389 |
N | 13 | P13del | CCC | --- | 3 | 3 | B.1.1.368 | 0.009259 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.376 | 0.017857 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.452 | 0.333333 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.1.464 | 0.004418 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.526 | 0.010638 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.1.528 | 0.014423 |
N | 13 | P13P | ccC | ccT | 3 | 3 | B.1.1.70 | 0.001023 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.110.3 | 0.002155 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.111 | 0.003525 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.139 | 0.002199 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.160.25 | 0.033333 |
N | 13 | P13P | ccC | ccT | 3 | 3 | B.1.177.12 | 0.000455 |
N | 13 | P13I | CCc | ATc | 3 | 3 | B.1.177.16 | 0.001993 |
N | 13 | P13T | Ccc | Acc | 3 | 3 | B.1.177.18 | 0.00348 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.177.40 | 0.015464 |
N | 13 | P13P | ccC | ccT | 3 | 3 | B.1.177.52 | 0.005272 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.177.60 | 0.000655 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.177.75 | 0.003122 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.177.81 | 0.000568 |
N | 13 | P13P | ccC | ccT | 3 | 3 | B.1.177.82 | 0.001432 |
N | 13 | P13del1 | Ccc | -cc | 3 | 3 | B.1.177.82 | 0.001432 |
N | 13 | P13P | ccC | ccT | 3 | 3 | B.1.218 | 0.015464 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.219 | 0.028302 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.324 | 0.004815 |
N | 13 | P13H | cCc | cAc | 3 | 3 | B.1.351 | 0.000089 |
N | 13 | P13del1 | Ccc | -cc | 3 | 3 | B.1.351 | 0.000089 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.36.17 | 0.001482 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.36.18 | 0.001261 |
N | 13 | P13T | Ccc | Acc | 3 | 3 | B.1.36.29 | 0.001552 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.389 | 0.003006 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.393 | 0.085714 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.408 | 0.01107 |
N | 13 | P13R | cCc | cGc | 3 | 3 | B.1.429 | 0.000071 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.436 | 0.003086 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.478 | 0.035294 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.540 | 0.029126 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.587 | 0.005693 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.596 | 0.000261 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.621 | 0.000266 |
N | 13 | P13L | cCc | cTc | 3 | 3 | B.1.628 | 0.001057 |
N | 13 | P13S | Ccc | Tcc | 3 | 3 | B.1.637 | 0.000219 |
N | 13 | P13F | CCc | TTc | 3 | 3 | C.26 | 0.022059 |
N | 13 | P13P | ccC | ccT | 3 | 3 | C.36 | 0.002732 |
N | 13 | P13L | cCc | cTc | 3 | 3 | N.4 | 0.012766 |
N | 13 | P13L | cCc | cTc | 3 | 3 | N.5 | 0.0053 |
N | 13 | P13L | cCc | cTc | 3 | 3 | P.1.1 | 0.000953 |
N | 13 | P13T | Ccc | Acc | 3 | 3 | P.1.12 | 0.001452 |
N | 13 | P13P | ccC | ccT | 3 | 3 | P.1.15 | 0.000697 |
N | 13 | P13L | cCc | cTc | 3 | 3 | P.1.16 | 0.001122 |
N | 13 | P13P | ccC | ccT | 3 | 3 | P.1.17 | 0.000485 |
N | 13 | P13L | cCc | cTc | 3 | 3 | P.1.2 | 0.003468 |
N | 13 | P13P | ccC | ccT | 3 | 3 | P.1.2 | 0.003468 |
N | 13 | P13P | ccC | ccT | 3 | 3 | P.3 | 0.004785 |
N | 13 | P13P | ccC | ccT | 3 | 3 | Q.4 | 0.001364 |
N | 13 | P13L | cCc | cTc | 2 | 2 | A.1 | 0.000564 |
N | 13 | P13P | ccC | ccT | 2 | 2 | A.23.1 | 0.001408 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | A.23.1 | 0.001408 |
N | 13 | P13L | cCc | cTc | 2 | 2 | A.24 | 0.142857 |
N | 13 | P13P | ccC | ccT | 2 | 2 | A.27 | 0.003311 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AT.1 | 0.010256 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.1 | 0.000791 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.107 | 0.000932 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.109 | 0.001479 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.111 | 0.000366 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.113 | 0.000285 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.113 | 0.000285 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.114 | 0.000462 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.118 | 0.000125 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.120 | 0.000074 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.121 | 0.000271 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.14 | 0.000176 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.14 | 0.000176 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.16.1 | 0.00094 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.16.1 | 0.00094 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.23 | 0.000139 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.23.1 | 0.000835 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.28 | 0.003781 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.29 | 0.000032 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.3.1 | 0.000171 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.3.1 | 0.000171 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.39.1 | 0.000079 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.39.2 | 0.003082 |
N | 13 | P13R | cCc | cGc | 2 | 2 | AY.4 | 0.000003 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.4.3 | 0.001684 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.45 | 0.000243 |
N | 13 | P13del | CCC | --- | 2 | 2 | AY.46 | 0.000208 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.46.4 | 0.000329 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.46.5 | 0.000397 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.46.6 | 0.000144 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.46.6 | 0.000144 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.47 | 0.000062 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.5.3 | 0.000675 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.5.3 | 0.000675 |
N | 13 | P13del1 | Ccc | -cc | 2 | 2 | AY.52 | 0.001629 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.53 | 0.000575 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.55 | 0.001835 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.55 | 0.001835 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.59 | 0.001059 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.6 | 0.000082 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.60 | 0.001876 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.62 | 0.000871 |
N | 13 | P13L | cCc | cTc | 1 | 2 | AY.62 | 0.000436 |
N | 13 | P13I | CCc | ATc | 1 | 2 | AY.62 | 0.000436 |
N | 13 | P13L | cCC | cTT | 1 | 2 | AY.62 | 0.000436 |
N | 13 | P13I | CCC | ATT | 1 | 2 | AY.62 | 0.000436 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.63 | 0.000774 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.7 | 0.000392 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.71 | 0.00095 |
N | 13 | P13P | ccC | ccA | 2 | 2 | AY.89 | 0.009804 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.9 | 0.000135 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.9.2 | 0.000073 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.9.2 | 0.000073 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.91 | 0.001461 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AY.95 | 0.001522 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.98 | 0.000158 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.98 | 0.000158 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.98 | 0.000158 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AY.98.1 | 0.000097 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.98.1 | 0.000097 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | AY.99 | 0.002099 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | AY.99.2 | 0.000184 |
N | 13 | P13P | ccC | ccT | 2 | 2 | AZ.2 | 0.001642 |
N | 13 | P13L | cCc | cTc | 2 | 2 | AZ.2 | 0.001642 |
N | 13 | P13R | cCc | cGc | 2 | 2 | B.1.1 | 0.000036 |
N | 13 | P13del | CCC | --- | 2 | 2 | B.1.1 | 0.000036 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.10 | 0.00223 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.1.148 | 0.017544 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.176 | 0.000879 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.189 | 0.003026 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.1.189 | 0.003026 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.214 | 0.000111 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.216 | 0.001781 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.1.217 | 0.007273 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.1.222 | 0.000408 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.1.236 | 0.013793 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.254 | 0.022472 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.1.263 | 0.003115 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.306 | 0.000877 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.317 | 0.000823 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.318 | 0.000604 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.33 | 0.000842 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.1.33 | 0.000842 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.343 | 0.041667 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.1.351 | 0.005587 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.1.368 | 0.006173 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.37 | 0.000386 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.37 | 0.000386 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.372 | 0.001377 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.1.377 | 0.002762 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.1.416 | 0.00181 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.416 | 0.00181 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.434 | 0.000697 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.464 | 0.002946 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.1.466 | 0.017391 |
N | 13 | P13A | Ccc | Gcc | 2 | 2 | B.1.1.7 | 0.000002 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.1.70 | 0.000682 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.1.83 | 0.00542 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.104 | 0.00738 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.110 | 0.00905 |
N | 13 | P13del1 | Ccc | -cc | 2 | 2 | B.1.160 | 0.000062 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.160.30 | 0.005952 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.177.21 | 0.000153 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.177.21 | 0.000153 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.177.42 | 0.001789 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.177.44 | 0.001038 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.177.57 | 0.000562 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.177.60 | 0.000437 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.177.7 | 0.00033 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.177.86 | 0.000367 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.177.86 | 0.000367 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.214.2 | 0.001199 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.234 | 0.000264 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.243 | 0.000139 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.258.24 | 0.021505 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.311 | 0.000549 |
N | 13 | P13F | CCc | TTc | 2 | 2 | B.1.351 | 0.000059 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.351.2 | 0.000605 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.36.10 | 0.009569 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.36.29 | 0.001035 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.362 | 0.003082 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.369 | 0.00057 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.375 | 0.001639 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.399 | 0.003868 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.416 | 0.002538 |
N | 13 | P13H | cCc | cAc | 2 | 2 | B.1.429 | 0.000047 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.466.2 | 0.000782 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.466.2 | 0.000782 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.466.2 | 0.000782 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.467 | 0.08 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.517 | 0.000854 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.523 | 0.004902 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.524 | 0.002813 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.525 | 0.000226 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.558 | 0.009132 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.568 | 0.002222 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.575 | 0.000607 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.596 | 0.000174 |
N | 13 | P13R | cCc | cGc | 2 | 2 | B.1.596 | 0.000174 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.1.605 | 0.011905 |
N | 13 | P13del | CCC | --- | 2 | 2 | B.1.617.2 | 0.000008 |
N | 13 | P13P | ccC | ccT | 2 | 2 | B.1.620 | 0.001892 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | B.1.620 | 0.001892 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.623 | 0.001073 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | B.1.637 | 0.000146 |
N | 13 | P13R | cCc | cGc | 2 | 2 | B.1.9 | 0.012346 |
N | 13 | P13L | cCc | cTc | 2 | 2 | B.39 | 0.004662 |
N | 13 | P13L | cCc | cTc | 2 | 2 | C.1 | 0.004785 |
N | 13 | P13L | cCc | cTc | 2 | 2 | C.14 | 0.008658 |
N | 13 | P13P | ccC | ccT | 2 | 2 | C.35 | 0.001548 |
N | 13 | P13I | CCc | ATc | 2 | 2 | C.37 | 0.000232 |
N | 13 | P13P | ccC | ccT | 2 | 2 | C.38 | 0.016129 |
N | 13 | P13L | cCc | cTc | 2 | 2 | C.39 | 0.037736 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | D.2 | 0.00015 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | L.3 | 0.007092 |
N | 13 | P13L | cCc | cTc | 2 | 2 | N.3 | 0.011628 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | N.5 | 0.003534 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | N.5 | 0.003534 |
N | 13 | P13P | ccC | ccT | 2 | 2 | P.1.1 | 0.000635 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | P.1.13 | 0.001797 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | P.1.14 | 0.000096 |
N | 13 | P13T | Ccc | Acc | 2 | 2 | P.1.14 | 0.000096 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | P.1.16 | 0.000748 |
N | 13 | P13L | cCc | cTc | 2 | 2 | P.1.7 | 0.000639 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | P.1.7 | 0.000639 |
N | 13 | P13S | Ccc | Tcc | 2 | 2 | P.2 | 0.000373 |
N | 13 | P13L | cCc | cTc | 2 | 2 | P.3 | 0.00319 |
N | 13 | P13L | cCc | cTc | 2 | 2 | Q.1 | 0.000253 |
N | 13 | P13L | cCc | cTc | 2 | 2 | Q.8 | 0.00033 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | A | 0.000387 |
N | 13 | P13P | ccC | ccT | 1 | 1 | A.1 | 0.000282 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.2.4 | 0.003367 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.2.5 | 0.000499 |
N | 13 | P13P | ccC | ccT | 1 | 1 | A.2.5 | 0.000499 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | A.2.5.1 | 0.004808 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.28 | 0.002646 |
N | 13 | P13L | cCc | cTc | 1 | 1 | A.30 | 0.142857 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AA.2 | 0.007692 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AD.2 | 0.000219 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AD.2 | 0.000219 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AE.8 | 0.000489 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AM.4 | 0.003571 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AM.4 | 0.003571 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AP.1 | 0.001502 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.10 | 0.00053 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.100 | 0.000046 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.100 | 0.000046 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.101 | 0.00049 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.101 | 0.00049 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.101 | 0.00049 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.102 | 0.000027 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.103 | 0.000006 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.104 | 0.001984 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.105 | 0.000643 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.105 | 0.000643 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.105 | 0.000643 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.107 | 0.000466 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.108 | 0.001103 |
N | 13 | P13R | cCc | cGc | 1 | 1 | AY.108 | 0.001103 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.109 | 0.00074 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.11 | 0.001339 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.113 | 0.000142 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.114 | 0.000231 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.116 | 0.000287 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.116.1 | 0.000311 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.118 | 0.000063 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.119 | 0.000035 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.12 | 0.000316 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.120 | 0.000037 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.120.1 | 0.000321 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.121 | 0.000135 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.13 | 0.000161 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.13 | 0.000161 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.16.1 | 0.00047 |
N | 13 | P13F | CCc | TTc | 1 | 1 | AY.18 | 0.010101 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.19 | 0.00114 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.19 | 0.00114 |
N | 13 | P13F | CCc | TTc | 1 | 1 | AY.23 | 0.00007 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.23 | 0.00007 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.23 | 0.00007 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.23.1 | 0.000417 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.24 | 0.000431 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.25 | 0.000006 |
N | 13 | P13A | Ccc | Gcc | 1 | 1 | AY.26 | 0.000028 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.27 | 0.000065 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.28 | 0.00189 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.29.1 | 0.000221 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | AY.3 | 0.00001 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.30 | 0.000396 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.32 | 0.000532 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.32 | 0.000532 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.33 | 0.000067 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.34 | 0.000097 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.34.1 | 0.00051 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.35 | 0.000233 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.39.1 | 0.00004 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.39.1 | 0.00004 |
N | 13 | P13del1 | CCC | -NN | 1 | 1 | AY.4 | 0.000002 |
N | 13 | P13A | Ccc | Gcc | 1 | 1 | AY.4 | 0.000002 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.4.4 | 0.000409 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.41 | 0.000294 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.42 | 0.00004 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.43 | 0.000004 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.44 | 0.000006 |
N | 13 | P13F | CCc | TTc | 1 | 1 | AY.44 | 0.000006 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.46 | 0.000104 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.46.2 | 0.000635 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.46.3 | 0.000934 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.46.6 | 0.000072 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.46.6 | 0.000072 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.47 | 0.000031 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.48 | 0.000465 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.49 | 0.003195 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.5 | 0.000021 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.5.3 | 0.000337 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.5.3 | 0.000337 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.51 | 0.000909 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.52 | 0.000814 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.53 | 0.000288 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.53 | 0.000288 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.55 | 0.000917 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.56 | 0.001605 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.58 | 0.000907 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.60 | 0.000938 |
N | 13 | P13R | cCc | cGc | 1 | 1 | AY.61 | 0.000105 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.62 | 0.000436 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.67 | 0.000464 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.68 | 0.000274 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.68 | 0.000274 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.7 | 0.000196 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.7.1 | 0.000113 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.70 | 0.000209 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.71 | 0.000475 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.72 | 0.001361 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.73 | 0.000665 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.74 | 0.000116 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.74 | 0.000116 |
N | 13 | P13R | cCc | cGc | 1 | 1 | AY.75.1 | 0.00018 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.79 | 0.001211 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.80 | 0.001129 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.84 | 0.000437 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.84 | 0.000437 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.86 | 0.00083 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.9 | 0.000068 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | AY.9 | 0.000068 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.9.2 | 0.000037 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.9.2 | 0.000037 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.92 | 0.000287 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.93 | 0.000273 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.93 | 0.000273 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.94 | 0.000443 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.96 | 0.002075 |
N | 13 | P13P | ccC | ccT | 1 | 1 | AY.98 | 0.000079 |
N | 13 | P13del | CCC | --- | 1 | 1 | AY.98.1 | 0.000048 |
N | 13 | P13L | cCc | cTc | 1 | 1 | AY.99.2 | 0.000092 |
N | 13 | P13H | cCc | cAc | 1 | 1 | AY.99.2 | 0.000092 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | AY.99.2 | 0.000092 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | B.1 | 0.000009 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | B.1.1 | 0.000018 |
N | 13 | P13H | cCc | cAc | 1 | 1 | B.1.1 | 0.000018 |
N | 13 | P13A | Ccc | Gcc | 1 | 1 | B.1.1 | 0.000018 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.1 | 0.000327 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.10 | 0.001115 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.10 | 0.001115 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.121 | 0.002427 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.138 | 0.006061 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.141 | 0.002012 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.153 | 0.001095 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.161 | 0.003534 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.163 | 0.007634 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.174 | 0.003378 |
N | 13 | P13P | ccC | ccG | 1 | 1 | B.1.1.174 | 0.003378 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.192 | 0.002309 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.192 | 0.002309 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.198 | 0.001468 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.200 | 0.007463 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.203 | 0.016949 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.204 | 0.00304 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.216 | 0.00089 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.216 | 0.00089 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.225 | 0.007194 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.231 | 0.003096 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.232 | 0.001815 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.241 | 0.00207 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.243 | 0.004082 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.244 | 0.015385 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.25 | 0.000569 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.25 | 0.000569 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.255 | 0.00303 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.256 | 0.013699 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.263 | 0.001558 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.265 | 0.003155 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.265 | 0.003155 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.279 | 0.001121 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.28 | 0.000311 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.282 | 0.011628 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.284 | 0.000107 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.284 | 0.000107 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.286 | 0.002899 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.294 | 0.001266 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.306 | 0.000438 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.306 | 0.000438 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.309 | 0.005848 |
N | 13 | P13F | CCc | TTc | 1 | 1 | B.1.1.312 | 0.001912 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.312 | 0.001912 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.316 | 0.000925 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.318 | 0.000302 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.325 | 0.025641 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.326 | 0.001761 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.337 | 0.003597 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.348 | 0.000796 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.353 | 0.020833 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.363 | 0.005988 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.366 | 0.015873 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.370 | 0.012658 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.372 | 0.000689 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.389 | 0.006061 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.39 | 0.00051 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.397 | 0.002252 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.40 | 0.034483 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.409 | 0.002833 |
N | 13 | P13R | cCc | cGc | 1 | 1 | B.1.1.409 | 0.002833 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.411 | 0.014706 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.412 | 0.007634 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.417 | 0.002703 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.417 | 0.002703 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.423 | 0.0625 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.431 | 0.016129 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.441 | 0.05 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.448 | 0.002033 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.46 | 0.004367 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.5 | 0.008333 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.50 | 0.000679 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.50 | 0.000679 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.1.519 | 0.00004 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.521 | 0.005348 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.523 | 0.001563 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.524 | 0.020833 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.56 | 0.017857 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.1.63 | 0.000386 |
N | 13 | P13F | CCc | TTc | 1 | 1 | B.1.1.7 | 0.000001 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.72 | 0.030303 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.74 | 0.00431 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.1.83 | 0.00271 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.1.88 | 0.071429 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.103 | 0.019231 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.111 | 0.001175 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.12 | 0.008 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.139 | 0.000733 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.142 | 0.002899 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.147 | 0.000756 |
N | 13 | P13H | cCc | cAc | 1 | 1 | B.1.160 | 0.000031 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.160.17 | 0.001701 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.170 | 0.00431 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.177.12 | 0.000152 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.177.15 | 0.000631 |
N | 13 | P13del | CCC | --- | 1 | 1 | B.1.177.16 | 0.000664 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.177.17 | 0.000821 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.177.31 | 0.011494 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.177.4 | 0.000211 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.42 | 0.000894 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.43 | 0.001477 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.177.43 | 0.001477 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.45 | 0.000381 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.51 | 0.004566 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.54 | 0.000606 |
N | 13 | P13del1 | CCC | -NN | 1 | 1 | B.1.177.56 | 0.000668 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.57 | 0.000281 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | B.1.177.6 | 0.000977 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.177.60 | 0.000218 |
N | 13 | P13P | ccC | ccA | 1 | 1 | B.1.177.63 | 0.002703 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.67 | 0.007634 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.69 | 0.001484 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.177.69 | 0.001484 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.73 | 0.000566 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.177.73 | 0.000566 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.177.77 | 0.000726 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.177.82 | 0.000477 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.177.83 | 0.001481 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.189 | 0.004292 |
N | 13 | P13H | cCc | cAc | 1 | 1 | B.1.2 | 0.000009 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | B.1.2 | 0.000009 |
N | 13 | P13del | CCC | --- | 1 | 1 | B.1.2 | 0.000009 |
N | 13 | P13F | CCc | TTc | 1 | 1 | B.1.2 | 0.000009 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.214 | 0.003663 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.214.3 | 0.007143 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.219 | 0.009434 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.22.1 | 0.03125 |
N | 13 | P13del1 | CCC | -NN | 1 | 1 | B.1.221.1 | 0.002907 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.221.2 | 0.004016 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.232 | 0.000537 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.232 | 0.000537 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.232 | 0.000537 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.236 | 0.002053 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.240 | 0.000216 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.240 | 0.000216 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.240 | 0.000216 |
N | 13 | P13F | CCc | TTc | 1 | 1 | B.1.241 | 0.000812 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.247 | 0.014925 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.258.11 | 0.000396 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.258.16 | 0.001637 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.260 | 0.003344 |
N | 13 | P13H | cCc | cAc | 1 | 1 | B.1.279 | 0.000514 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.279 | 0.000514 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.301 | 0.005917 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.302 | 0.013333 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | B.1.305 | 0.002151 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.305 | 0.002151 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.311 | 0.000275 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.328 | 0.03125 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.343 | 0.020833 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.346 | 0.001311 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.349 | 0.000715 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.351.5 | 0.0006 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.351.5 | 0.0006 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.36 | 0.000146 |
N | 13 | P13R | cCc | cGc | 1 | 1 | B.1.36 | 0.000146 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | B.1.36.1 | 0.00114 |
N | 13 | P13P | ccC | ccA | 1 | 1 | B.1.36.10 | 0.004785 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.36.12 | 0.009615 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.36.17 | 0.000494 |
N | 13 | P13F | CCc | TTc | 1 | 1 | B.1.36.17 | 0.000494 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.36.22 | 0.001208 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.36.31 | 0.001751 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.36.34 | 0.021277 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.36.36 | 0.000602 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.36.36 | 0.000602 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.36.7 | 0.004 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.36.8 | 0.001 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.36.8 | 0.001 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.36.8 | 0.001 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.361 | 0.001289 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.362 | 0.001541 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.367 | 0.000792 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.367 | 0.000792 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.369 | 0.000285 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.37 | 0.014706 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.381 | 0.007812 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.396 | 0.000706 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.398 | 0.002976 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.400 | 0.000429 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.404 | 0.001302 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.409 | 0.000781 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.420 | 0.010417 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.422 | 0.000812 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.422 | 0.000812 |
N | 13 | P13P | ccC | ccG | 1 | 1 | B.1.425 | 0.002994 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.433 | 0.003195 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.434 | 0.052632 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.438.1 | 0.000107 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.456 | 0.003268 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.459 | 0.004082 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.459 | 0.004082 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.459 | 0.004082 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.462 | 0.007246 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.470 | 0.001404 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.471 | 0.002732 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.474 | 0.001901 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.493 | 0.025641 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.497 | 0.000315 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.497 | 0.000315 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.499 | 0.00105 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.499 | 0.00105 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.509 | 0.000866 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.517 | 0.000427 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.520 | 0.021739 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.521 | 0.004975 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.523 | 0.002451 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.524 | 0.001406 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.524 | 0.001406 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.525 | 0.000113 |
N | 13 | P13F | CCc | TTc | 1 | 1 | B.1.526 | 0.000024 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.530 | 0.007143 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.533 | 0.009615 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.538 | 0.008065 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.551 | 0.00129 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.551 | 0.00129 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.554 | 0.004405 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.560 | 0.00463 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.561 | 0.000397 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.564 | 0.000426 |
N | 13 | P13P | ccC | ccG | 1 | 1 | B.1.564 | 0.000426 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.564.1 | 0.001577 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.567 | 0.003333 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.568 | 0.001111 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.570 | 0.002941 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.574 | 0.002151 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.575 | 0.000303 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.575.1 | 0.002439 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.577 | 0.000687 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.582 | 0.000491 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.595 | 0.000261 |
N | 13 | P13H | cCc | cAc | 1 | 1 | B.1.595 | 0.000261 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.595 | 0.000261 |
N | 13 | P13H | cCc | cAc | 1 | 1 | B.1.596 | 0.000087 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.600 | 0.005848 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.606 | 0.006024 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.612 | 0.002653 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | B.1.617.1 | 0.000129 |
N | 13 | P13R | cCc | cGc | 1 | 1 | B.1.617.2 | 0.000004 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.618 | 0.004032 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.620 | 0.000946 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.621.1 | 0.000506 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.621.1 | 0.000506 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.623 | 0.000536 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.627 | 0.00202 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.628 | 0.000352 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.630 | 0.005236 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.1.631 | 0.003367 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.631 | 0.003367 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.638 | 0.052632 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.78 | 0.008547 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.8 | 0.001972 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.1.81 | 0.021277 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.9.4 | 0.006135 |
N | 13 | P13R | cCc | cGc | 1 | 1 | B.1.9.4 | 0.006135 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.1.9.5 | 0.005682 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.1.93 | 0.000934 |
N | 13 | P13H | cCc | cAc | 1 | 1 | B.1.93 | 0.000934 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.3 | 0.000831 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.38 | 0.02381 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | B.39 | 0.002331 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.4 | 0.002208 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.4 | 0.002208 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.40 | 0.000364 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | B.55 | 0.00295 |
N | 13 | P13L | cCc | cTc | 1 | 1 | B.55 | 0.00295 |
N | 13 | P13P | ccC | ccT | 1 | 1 | B.58 | 0.010204 |
N | 13 | P13P | ccC | ccT | 1 | 1 | C.18 | 0.002591 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | C.35 | 0.000774 |
N | 13 | P13L | cCc | cTc | 1 | 1 | C.35 | 0.000774 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | C.35 | 0.000774 |
N | 13 | P13R | cCc | cGc | 1 | 1 | C.36 | 0.000911 |
N | 13 | P13H | cCc | cAc | 1 | 1 | C.37 | 0.000116 |
N | 13 | P13P | ccC | ccT | 1 | 1 | N.3 | 0.005814 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | P.1.1 | 0.000318 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | P.1.1 | 0.000318 |
N | 13 | P13P | ccC | ccT | 1 | 1 | P.1.10.1 | 0.00813 |
N | 13 | P13L | cCc | cTc | 1 | 1 | P.1.13 | 0.000898 |
N | 13 | P13P | ccC | ccT | 1 | 1 | P.1.13 | 0.000898 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | P.1.17 | 0.000162 |
N | 13 | P13del | CCC | --- | 1 | 1 | P.1.7 | 0.000319 |
N | 13 | P13P | ccC | ccT | 1 | 1 | P.1.7 | 0.000319 |
N | 13 | P13L | cCc | cTc | 1 | 1 | P.2 | 0.000187 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | Q.1 | 0.000126 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | Q.3 | 0.000145 |
N | 13 | P13P | ccC | ccT | 1 | 1 | Q.6 | 0.006623 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | Q.8 | 0.000165 |
N | 13 | P13H | cCc | cAc | 1 | 1 | Q.8 | 0.000165 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | Q.8 | 0.000165 |
N | 13 | P13del1 | Ccc | -cc | 1 | 1 | R.1 | 0.00009 |
N | 13 | P13T | Ccc | Acc | 1 | 1 | R.1 | 0.00009 |
N | 13 | P13P | ccC | ccT | 1 | 1 | R.1 | 0.00009 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | U.3 | 0.003861 |
N | 13 | P13S | Ccc | Tcc | 1 | 1 | V.1 | 0.022727 |
N | 13 | P13L | cCc | cTc | 1 | 1 | W.3 | 0.005263 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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