CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 128 | D128Y | nonsyn | Gac | Tac | 2795 | 2777 | 0.99356 | 28655-28657 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 128 | D128Y | Gac | Tac | 2777 | 2795 | All | 0.000531 |
N | 128 | D128Y | Gac | Tac | 393 | 396 | B.1 | 0.0036 |
N | 128 | D128Y | Gac | Tac | 355 | 355 | B.1.177.21 | 0.027147 |
N | 128 | D128Y | Gac | Tac | 328 | 328 | B.1.22 | 0.432148 |
N | 128 | D128Y | Gac | Tac | 206 | 206 | B.1.258 | 0.013709 |
N | 128 | D128Y | Gac | Tac | 126 | 126 | B.1.453 | 0.407767 |
N | 128 | D128Y | Gac | Tac | 113 | 113 | AA.2 | 0.869231 |
N | 128 | D128Y | Gac | Tac | 92 | 93 | B.1.1 | 0.001669 |
N | 128 | D128Y | Gac | Tac | 85 | 85 | B.1.160 | 0.002651 |
N | 128 | D128Y | Gac | Tac | 79 | 79 | B.1.429 | 0.001859 |
N | 128 | D128Y | Gac | Tac | 61 | 61 | B.1.351 | 0.001813 |
N | 128 | D128Y | Gac | Tac | 55 | 55 | B.1.1.7 | 0.000049 |
N | 128 | D128Y | Gac | Tac | 50 | 50 | B.1.36 | 0.007295 |
N | 128 | D128Y | Gac | Tac | 49 | 49 | B.1.177 | 0.000645 |
N | 128 | D128Y | Gac | Tac | 44 | 44 | B.1.416.1 | 0.06875 |
N | 128 | D128Y | Gac | Tac | 42 | 42 | B.1.258.3 | 0.070352 |
N | 128 | D128Y | Gac | Tac | 35 | 35 | B.1.369 | 0.009983 |
N | 128 | D128Y | Gac | Tac | 32 | 32 | B.1.22.1 | 1 |
N | 128 | D128Y | Gac | Tac | 31 | 31 | B.1.1.434 | 0.010805 |
N | 128 | D128Y | Gac | Tac | 28 | 28 | B.1.621 | 0.002479 |
N | 128 | D128Y | Gac | Tac | 25 | 25 | AY.4 | 0.000039 |
N | 128 | D128Y | Gac | Tac | 20 | 20 | B.1.320 | 0.024907 |
N | 128 | D128Y | Gac | Tac | 19 | 19 | B.1.1.111 | 0.279412 |
N | 128 | D128Y | Gac | Tac | 19 | 19 | B.1.243 | 0.001322 |
N | 128 | D128Y | Gac | Tac | 18 | 18 | B.1.36.8 | 0.018 |
N | 128 | D128Y | Gac | Tac | 17 | 17 | B.1.221 | 0.001208 |
N | 128 | D128Y | Gac | Tac | 14 | 14 | B.1.1.222 | 0.002856 |
N | 128 | D128Y | Gac | Tac | 13 | 13 | C.35 | 0.010062 |
N | 128 | D128Y | Gac | Tac | 12 | 12 | B.1.1.519 | 0.000477 |
N | 128 | D128Y | Gac | Tac | 12 | 12 | B.1.336 | 0.029268 |
N | 128 | D128Y | Gac | Tac | 11 | 11 | B.1.1.37 | 0.002122 |
N | 128 | D128Y | Gac | Tac | 11 | 11 | B.1.2 | 0.000097 |
N | 128 | D128Y | Gac | Tac | 11 | 11 | B.1.240 | 0.002371 |
N | 128 | D128Y | Gac | Tac | 11 | 11 | B.1.637 | 0.000804 |
N | 128 | D128Y | Gac | Tac | 10 | 10 | B.1.1.214 | 0.000555 |
N | 128 | D128Y | Gac | Tac | 10 | 10 | B.1.526 | 0.000235 |
N | 128 | D128Y | Gac | Tac | 10 | 10 | D.2 | 0.00075 |
N | 128 | D128Y | Gac | Tac | 9 | 9 | B | 0.00115 |
N | 128 | D128Y | Gac | Tac | 9 | 9 | B.1.466.2 | 0.003521 |
N | 128 | D128Y | Gac | Tac | 9 | 9 | B.1.617.1 | 0.001161 |
N | 128 | D128Y | Gac | Tac | 7 | 7 | B.1.1.306 | 0.003069 |
N | 128 | D128Y | Gac | Tac | 7 | 7 | B.1.599 | 0.025547 |
N | 128 | D128Y | Gac | Tac | 7 | 7 | B.1.609 | 0.003356 |
N | 128 | D128Y | Gac | Tac | 7 | 7 | R.1 | 0.00063 |
N | 128 | D128Y | Gac | Tac | 6 | 6 | A.23.1 | 0.004225 |
N | 128 | D128Y | Gac | Tac | 6 | 6 | A.28 | 0.015873 |
N | 128 | D128Y | Gac | Tac | 6 | 6 | B.1.36.17 | 0.002964 |
N | 128 | D128Y | Gac | Tac | 6 | 6 | B.1.470 | 0.008427 |
N | 128 | D128Y | Gac | Tac | 6 | 6 | B.1.8 | 0.011834 |
N | 128 | D128Y | Gac | Tac | 5 | 5 | B.1.1.204 | 0.015198 |
N | 128 | D128Y | Gac | Tac | 5 | 5 | B.1.1.216 | 0.004452 |
N | 128 | D128Y | Gac | Tac | 5 | 5 | B.1.1.487 | 0.027933 |
N | 128 | D128Y | Gac | Tac | 5 | 5 | B.1.237 | 0.024876 |
N | 128 | D128Y | Gac | Tac | 5 | 5 | B.1.265 | 0.006353 |
N | 128 | D128Y | Gac | Tac | 5 | 5 | B.1.381 | 0.039062 |
N | 128 | D128Y | Gac | Tac | 5 | 5 | B.1.427 | 0.000252 |
N | 128 | D128Y | Gac | Tac | 4 | 4 | AY.103 | 0.000025 |
N | 128 | D128Y | Gac | Tac | 4 | 4 | AY.3 | 0.00004 |
N | 128 | D128Y | Gac | Tac | 4 | 4 | B.1.1.70 | 0.001364 |
N | 128 | D128Y | Gac | Tac | 4 | 4 | B.1.177.4 | 0.000844 |
N | 128 | D128Y | Gac | Tac | 4 | 4 | B.1.178 | 0.095238 |
N | 128 | D128Y | Gac | Tac | 4 | 4 | B.1.575 | 0.001214 |
N | 128 | D128Y | Gac | Tac | 4 | 4 | B.1.617.2 | 0.000015 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | A.1 | 0.000846 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | A.19 | 0.028302 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | AY.109 | 0.002219 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | B.1.1.1 | 0.00098 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | B.1.1.384 | 0.071429 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | B.1.1.39 | 0.001529 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | B.1.236 | 0.00616 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | B.1.258.17 | 0.000312 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | B.1.561 | 0.001191 |
N | 128 | D128Y | Gac | Tac | 3 | 3 | B.1.595 | 0.000783 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | 0.111111 | |
N | 128 | D128Y | Gac | Tac | 2 | 2 | A.21 | 0.00554 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | A.27 | 0.003311 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.117 | 0.000169 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.118 | 0.000125 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.120 | 0.000074 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.25 | 0.000012 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.46 | 0.000208 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.63 | 0.000774 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.7.1 | 0.000225 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AY.98 | 0.000158 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | AZ.1 | 0.001735 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.1.135 | 0.00939 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.1.137 | 0.025 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.1.209 | 0.017857 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.1.263 | 0.003115 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.1.372 | 0.001377 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.1.398 | 0.006452 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.127 | 0.004396 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.177.60 | 0.000437 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.239 | 0.002442 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.36.10 | 0.009569 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.366 | 0.009756 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.456 | 0.006536 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.462 | 0.014493 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.475 | 0.285714 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.611 | 0.08 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.1.620 | 0.001892 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | B.31 | 0.007463 |
N | 128 | D128Y | Gac | Tac | 2 | 2 | P.2 | 0.000373 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | A | 0.000387 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AD.2 | 0.000219 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AM.4 | 0.003571 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AT.1 | 0.005128 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.108 | 0.001103 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.20 | 0.000039 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.39 | 0.000025 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.39.1 | 0.00004 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.42 | 0.00004 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.43 | 0.000004 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.5 | 0.000021 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.64 | 0.000595 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.7 | 0.000196 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.71 | 0.000475 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | AY.9.1 | 0.000084 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.127 | 0.0625 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.157 | 0.000913 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.170 | 0.001247 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.25 | 0.000569 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.277 | 0.000759 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.280 | 0.003086 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.289 | 0.002083 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.318 | 0.000302 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.344 | 0.010753 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.348 | 0.000796 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.397 | 0.002252 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.4 | 0.002976 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.412 | 0.007634 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.416 | 0.000905 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.419 | 0.007407 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.50 | 0.000679 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.526 | 0.003546 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.1.63 | 0.000386 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.110.3 | 0.000718 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.12 | 0.008 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.126 | 0.001276 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.146 | 0.004237 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.147 | 0.000756 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.160.16 | 0.000929 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.160.30 | 0.002976 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.15 | 0.000631 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.17 | 0.000821 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.31 | 0.011494 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.5 | 0.001242 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.51 | 0.004566 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.54 | 0.000606 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.6 | 0.000977 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.77 | 0.000726 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.81 | 0.000189 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.177.9 | 0.001332 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.214 | 0.003663 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.258.11 | 0.000396 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.258.20 | 0.015873 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.284 | 0.013158 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.332 | 0.003497 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.351.2 | 0.000303 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.36.18 | 0.00042 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.36.26 | 0.002857 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.36.29 | 0.000517 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.367 | 0.000792 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.377 | 0.004566 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.404 | 0.001302 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.408 | 0.00369 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.411 | 0.003704 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.422 | 0.000812 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.437 | 0.020833 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.438.1 | 0.000107 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.439 | 0.005917 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.468 | 0.005714 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.501 | 0.007353 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.525 | 0.000113 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.550 | 0.013699 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.588 | 0.00091 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.596 | 0.000087 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.597 | 0.00463 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.627 | 0.00202 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.628 | 0.000352 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.78 | 0.008547 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.84 | 0.020833 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.1.94 | 0.027027 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.28 | 0.003279 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.39 | 0.002331 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.4.6 | 0.016667 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | B.6.6 | 0.000889 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | C.1 | 0.002392 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | C.16 | 0.00106 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | C.37 | 0.000116 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | N.9 | 0.005952 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | P.1 | 0.000016 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | P.1.15 | 0.000232 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | Q.4 | 0.000455 |
N | 128 | D128Y | Gac | Tac | 1 | 1 | R.2 | 0.014493 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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