CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 122

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N122P122LnonsyncCccTc227022670.99867828637-28639
N122P122LnonsyncCCcTT227030.0013215928637-28639
N122P122HnonsyncCccAc537537128637-28639
N122P122PsynccCccT5223530.67624528637-28639
N122P122PsynccCccA5221670.31992328637-28639
N122P122PsynccCccG52220.0038314228637-28639
N122P122SnonsynCccTcc4764750.99789928637-28639
N122P122SnonsynCcCTcT47610.0021008428637-28639
N122P122TnonsynCccAcc2626128637-28639
N122P122AnonsynCccGcc2222128637-28639
N122P122del1delCcc-cc1313128637-28639
N122P122deldelCCC---77128637-28639
N122P122RnonsyncCCcGT640.66666728637-28639
N122P122RnonsyncCccGc620.33333328637-28639
N122P122InonsynCCcATc11128637-28639
N122P122NnonsynCCcAAc11128637-28639
N122P122CnonsynCCcTGc11128637-28639
N122P122VnonsynCCcGTc11128637-28639
N122P122FnonsynCCcTTc11128637-28639

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N122P122LcCccTc22672270All0.000434
N122P122LcCCcTT32270All0.000001
N122P122LcCccTc15421542AY.370.487358
N122P122HcCccAc537537All0.000103
N122P122PccCccT353522All0.000068
N122P122PccCccA167522All0.000032
N122P122PccCccG2522All0
N122P122SCccTcc475476All0.000091
N122P122SCcCTcT1476All0
N122P122HcCccAc324324B.1.1.2280.987805
N122P122LcCccTc135135AY.40.00021
N122P122LcCccTc9999B.1.617.20.000373
N122P122SCccTcc9393B.1.1.70.000083
N122P122SCccTcc8787AY.250.000523
N122P122HcCccAc8080AY.40.000125
N122P122LcCccTc7575B.1.1.70.000067
N122P122LcCccTc6969AY.440.00042
N122P122PccCccT5866B.1.1.70.000052
N122P122PccCccA866B.1.1.70.000007
N122P122LcCccTc6565B.1.258.170.006758
N122P122HcCccAc5757B.10.000522
N122P122PccCccT2948AY.40.000045
N122P122PccCccA1948AY.40.00003
N122P122SCccTcc4747AY.40.000073
N122P122LcCccTc4747B.10.00043
N122P122SCccTcc4040AY.260.001132
N122P122PccCccT3839P.10.000599
N122P122PccCccA139P.10.000016
N122P122PccCccT2836AY.440.00017
N122P122PccCccA836AY.440.000049
N122P122SCccTcc3636B.1.1600.001123
N122P122HcCccAc3535B.1.6090.016779
N122P122PccCccA3031AY.1030.000186
N122P122PccCccT131AY.1030.000006
N122P122PccCccT2929AY.260.000821
N122P122SCccTcc2727AW.10.082317
N122P122TCccAcc2626All0.000005
N122P122PccCccA2325AY.330.001536
N122P122PccCccT225AY.330.000134
N122P122ACccGcc2222All0.000004
N122P122LcCccTc2121AY.700.004379
N122P122SCccTcc2020AY.440.000122
N122P122SCccTcc1919AY.30.000189
N122P122LcCccTc1818AY.1020.000477
N122P122PccCccT1418AY.250.000084
N122P122PccCccA418AY.250.000024
N122P122PccCccT1314B.1.10.000236
N122P122PccCccA114B.1.10.000018
N122P122del1Ccc-cc1313All0.000002
N122P122PccCccT1313B.1.5750.003944
N122P122LcCccTc1212B.1.5260.000282
N122P122SCccTcc1111B.1.2430.000765
N122P122SCccTcc1011B.1.617.20.000038
N122P122SCcCTcT111B.1.617.20.000004
N122P122PccCccT1111C.370.001277
N122P122LcCccTc1111P.1.160.004115
N122P122TCccAcc1010AY.200.000389
N122P122PccCccT610B.1.617.20.000023
N122P122PccCccA410B.1.617.20.000015
N122P122HcCccAc99AY.39.10.000357
N122P122HcCccAc99AY.430.00004
N122P122SCccTcc99AY.50.000186
N122P122PccCccA69B.10.000055
N122P122PccCccT39B.10.000027
N122P122ACccGcc99B.1.1.70.000008
N122P122ACccGcc99B.1.5250.001018
N122P122PccCccT99P.1.100.002425
N122P122PccCccA99Q.10.001137
N122P122PccCccT88B.1.1.370.001543
N122P122PccCccA68B.1.2430.000418
N122P122PccCccT28B.1.2430.000139
N122P122delCCC---77All0.000001
N122P122LcCccTc77AY.1030.000043
N122P122LcCccTc77AY.250.000042
N122P122LcCccTc77AY.30.00007
N122P122PccCccA67AY.390.000148
N122P122PccCccT17AY.390.000025
N122P122PccCccT57AY.430.000022
N122P122PccCccA27AY.430.000009
N122P122PccCccT67AY.50.000124
N122P122PccCccA17AY.50.000021
N122P122LcCccTc77AY.530.002013
N122P122SCccTcc77P.10.00011
N122P122RcCCcGT460.222222
N122P122RcCccGc260.111111
N122P122RcCCcGT46All0.000001
N122P122RcCccGc26All0
N122P122SCccTcc66AY.1030.000037
N122P122LcCccTc66AY.130.000966
N122P122LcCccTc66AY.390.000148
N122P122LcCccTc66AY.4.2.10.000894
N122P122LcCccTc66AY.650.003198
N122P122SCccTcc66B.10.000055
N122P122PccCccT46B.1.20.000035
N122P122PccCccA26B.1.20.000018
N122P122LcCccTc66B.1.4290.000141
N122P122HcCccAc66B.1.617.20.000023
N122P122PccCccT55B.1.1.2730.033784
N122P122del1Ccc-cc55B.1.1.70.000004
N122P122LcCccTc55B.1.1.700.001705
N122P122SCccTcc55B.1.1770.000066
N122P122SCccTcc55B.1.3510.000149
N122P122PccCccT55B.1.3510.000149
N122P122PccCccT55R.10.00045
N122P122LcCccTc44AY.1000.000184
N122P122PccCccA34AY.1020.00008
N122P122PccCccT14AY.1020.000027
N122P122PccCccA24AY.30.00002
N122P122PccCccT14AY.30.00001
N122P122PccCccG14AY.30.00001
N122P122LcCccTc44AY.4.20.000087
N122P122LcCccTc44AY.430.000018
N122P122PccCccA34AY.470.000093
N122P122PccCccT14AY.470.000031
N122P122SCccTcc44B.1.20.000035
N122P122LcCccTc44B.1.20.000035
N122P122PccCccA44B.1.5250.000453
N122P122PccCccA23AY.1000.000092
N122P122PccCccT13AY.1000.000046
N122P122LcCccTc33AY.200.000117
N122P122PccCccT33AY.200.000117
N122P122HcCccAc33AY.250.000018
N122P122LcCccTc33AY.420.000121
N122P122PccCccA23AY.420.00008
N122P122PccCccT13AY.420.00004
N122P122LcCccTc33AY.470.000093
N122P122TCccAcc33AY.9.20.00011
N122P122LcCccTc33B.1.1.2220.000612
N122P122LcCccTc33B.1.1770.00004
N122P122PccCccT33B.1.177.210.000229
N122P122LcCccTc33B.1.177.810.000568
N122P122HcCccAc33B.1.20.000026
N122P122PccCccT23B.1.2580.000133
N122P122PccCccA13B.1.2580.000067
N122P122PccCccT33B.1.36.170.001482
N122P122PccCccT33B.400.001093
N122P122PccCccA23C.360.001821
N122P122PccCccT13C.360.000911
N122P122LcCccTc33Q.10.000379
N122P122LcCCcTT220.111111
N122P122HcCccAc220.111111
N122P122PccCccT220.111111
N122P122PccCccT22AY.1210.000271
N122P122PccCccT12AY.290.000016
N122P122PccCccA12AY.290.000016
N122P122LcCccTc22AY.340.000194
N122P122LcCccTc22AY.39.10.000079
N122P122TCccAcc22AY.440.000012
N122P122ACccGcc22AY.440.000012
N122P122HcCccAc22AY.440.000012
N122P122LcCccTc22AY.460.000208
N122P122PccCccA22AY.5.30.000675
N122P122LcCccTc22AY.660.002139
N122P122LcCccTc22AY.740.000231
N122P122PccCccT22AY.750.000112
N122P122PccCccA22AY.75.10.000361
N122P122LcCccTc22AY.75.10.000361
N122P122PccCccT22AY.860.00166
N122P122LcCccTc22AY.9.10.000167
N122P122PccCccT22AY.910.001461
N122P122PccCccT22AY.98.10.000097
N122P122SCccTcc22B.1.10.000036
N122P122SCccTcc22B.1.1.330.000842
N122P122SCccTcc22B.1.1.4320.002532
N122P122LcCccTc22B.1.1.4410.1
N122P122PccCccT22B.1.1.5190.000079
N122P122SCccTcc22B.1.1.630.000772
N122P122TCccAcc22B.1.1.70.000002
N122P122LcCccTc22B.1.214.20.001199
N122P122LcCccTc22B.1.3510.000059
N122P122SCccTcc22B.1.360.000292
N122P122LcCccTc22B.1.5820.000981
N122P122PccCccT22B.1.5950.000522
N122P122LcCccTc22B.1.617.10.000258
N122P122LcCccTc22B.1.619.10.001283
N122P122LcCccTc22P.10.000032
N122P122SCccTcc22P.1.100.000539
N122P122LcCccTc22P.30.00319
N122P122SCccTcc110.055556
N122P122PccCccA11A0.000387
N122P122del1Ccc-cc11A0.000387
N122P122SCccTcc11A.23.10.000704
N122P122FCCcTTc11All0
N122P122VCCcGTc11All0
N122P122CCCcTGc11All0
N122P122NCCcAAc11All0
N122P122ICCcATc11All0
N122P122LcCccTc11AY.100.00053
N122P122SCccTcc11AY.1020.000027
N122P122PccCccT11AY.1040.001984
N122P122LcCccTc11AY.1070.000466
N122P122LcCccTc11AY.1110.000183
N122P122LcCccTc11AY.1160.000287
N122P122HcCccAc11AY.116.10.000311
N122P122PccCccA11AY.1170.000085
N122P122LcCccTc11AY.1180.000063
N122P122LcCccTc11AY.1190.000035
N122P122PccCccA11AY.1200.000037
N122P122PccCccT11AY.120.10.000321
N122P122PccCccG11AY.130.000161
N122P122SCccTcc11AY.130.000161
N122P122PccCccA11AY.20.000356
N122P122del1Ccc-cc11AY.230.00007
N122P122TCccAcc11AY.240.000431
N122P122TCccAcc11AY.250.000006
N122P122delCCC---11AY.30.00001
N122P122PccCccT11AY.3.10.000085
N122P122SCccTcc11AY.3.10.000085
N122P122LcCccTc11AY.330.000067
N122P122LcCccTc11AY.360.000148
N122P122del1Ccc-cc11AY.390.000025
N122P122TCccAcc11AY.40.000002
N122P122SCccTcc11AY.4.10.000737
N122P122PccCccT11AY.4.10.000737
N122P122SCccTcc11AY.4.20.000022
N122P122PccCccT11AY.4.2.10.000149
N122P122HcCccAc11AY.4.2.10.000149
N122P122SCccTcc11AY.4.2.10.000149
N122P122PccCccT11AY.4.50.000107
N122P122LcCccTc11AY.410.000294
N122P122delCCC---11AY.420.00004
N122P122SCccTcc11AY.430.000004
N122P122del1Ccc-cc11AY.440.000006
N122P122VCCcGTc11AY.440.000006
N122P122LcCccTc11AY.450.000122
N122P122PccCccT11AY.460.000104
N122P122PccCccA11AY.46.20.000635
N122P122SCccTcc11AY.46.60.000072
N122P122HcCccAc11AY.50.000021
N122P122LcCccTc11AY.5.30.000337
N122P122PccCccA11AY.540.000095
N122P122LcCccTc11AY.540.000095
N122P122SCccTcc11AY.550.000917
N122P122LcCccTc11AY.590.00053
N122P122LcCccTc11AY.60.000041
N122P122LcCccTc11AY.610.000105
N122P122PccCccT11AY.650.000533
N122P122delCCC---11AY.670.000464
N122P122LcCccTc11AY.680.000274
N122P122HcCccAc11AY.710.000475
N122P122SCccTcc11AY.740.000116
N122P122SCccTcc11AY.750.000056
N122P122del1Ccc-cc11AY.790.001211
N122P122del1Ccc-cc11AY.820.001357
N122P122LcCccTc11AY.870.000833
N122P122LcCccTc11AY.90.000068
N122P122SCccTcc11AY.9.10.000084
N122P122SCccTcc11AY.9.20.000037
N122P122SCccTcc11AY.980.000079
N122P122PccCccA11AY.980.000079
N122P122LcCccTc11AY.99.20.000092
N122P122HcCccAc11B0.000128
N122P122PccCccT11B0.000128
N122P122del1Ccc-cc11B.10.000009
N122P122TCccAcc11B.10.000009
N122P122NCCcAAc11B.10.000009
N122P122LcCccTc11B.1.10.000018
N122P122CCCcTGc11B.1.10.000018
N122P122TCccAcc11B.1.10.000018
N122P122LcCccTc11B.1.1.1650.015385
N122P122SCccTcc11B.1.1.2070.001182
N122P122PccCccT11B.1.1.250.000569
N122P122PccCccA11B.1.1.2720.005208
N122P122PccCccT11B.1.1.2740.005051
N122P122SCccTcc11B.1.1.280.000311
N122P122PccCccT11B.1.1.2840.000107
N122P122PccCccA11B.1.1.2940.001266
N122P122SCccTcc11B.1.1.3020.002075
N122P122PccCccT11B.1.1.3020.002075
N122P122LcCccTc11B.1.1.3060.000438
N122P122LcCccTc11B.1.1.330.000421
N122P122SCccTcc11B.1.1.3720.000689
N122P122PccCccA11B.1.1.3740.002375
N122P122delCCC---11B.1.1.4200.001006
N122P122LcCccTc11B.1.1.4340.000349
N122P122TCccAcc11B.1.1.4480.002033
N122P122SCccTcc11B.1.1.5190.00004
N122P122LcCccTc11B.1.1.5260.003546
N122P122delCCC---11B.1.1.70.000001
N122P122PccCccT11B.1.1100.004525
N122P122LcCccTc11B.1.1600.000031
N122P122TCccAcc11B.1.1600.000031
N122P122LcCccTc11B.1.1670.007812
N122P122HcCccAc11B.1.1770.000013
N122P122LcCccTc11B.1.177.390.015385
N122P122LcCccTc11B.1.177.60.000977
N122P122LcCCcTT11B.1.177.630.002703
N122P122LcCccTc11B.1.177.820.000477
N122P122delCCC---11B.1.177.830.001481
N122P122del1Ccc-cc11B.1.20.000009
N122P122SCccTcc11B.1.220.001318
N122P122LcCccTc11B.1.2230.002778
N122P122SCccTcc11B.1.230.006061
N122P122LcCccTc11B.1.2340.000132
N122P122TCccAcc11B.1.2430.00007
N122P122PccCccT11B.1.258.140.00098
N122P122PccCccT11B.1.2640.012346
N122P122ACccGcc11B.1.3110.000275
N122P122LcCccTc11B.1.360.000146
N122P122HcCccAc11B.1.360.000146
N122P122PccCccT11B.1.360.000146
N122P122SCccTcc11B.1.36.190.009259
N122P122PccCccA11B.1.36.360.000602
N122P122LcCccTc11B.1.36.80.001
N122P122ICCcATc11B.1.3980.002976
N122P122PccCccA11B.1.3980.002976
N122P122LcCccTc11B.1.4160.001269
N122P122SCccTcc11B.1.4220.000812
N122P122delCCC---11B.1.4270.00005
N122P122PccCccT11B.1.4290.000024
N122P122LcCccTc11B.1.466.20.000391
N122P122LcCccTc11B.1.5600.00463
N122P122SCccTcc11B.1.5950.000261
N122P122SCccTcc11B.1.6120.002653
N122P122SCccTcc11B.1.617.10.000129
N122P122LcCccTc11B.1.6200.000946
N122P122PccCccT11B.1.6200.000946
N122P122PccCccT11B.1.6210.000089
N122P122LcCccTc11B.1.6210.000089
N122P122LcCccTc11B.1.6280.000352
N122P122ACccGcc11B.1.6360.006711
N122P122LcCccTc11B.1.6370.000073
N122P122SCccTcc11B.1.930.000934
N122P122TCccAcc11B.6.80.008264
N122P122LcCccTc11C.10.002392
N122P122SCccTcc11C.110.010638
N122P122PccCccA11C.170.055556
N122P122PccCccT11D.20.000075
N122P122LcCccTc11D.20.000075
N122P122SCccTcc11D.20.000075
N122P122FCCcTTc11P.1.160.000374