CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
N | 119 | A119S | nonsyn | Gct | Tct | 12186 | 12177 | 0.999261 | 28628-28630 | |
N | 119 | A119S | nonsyn | GcT | TcA | 12186 | 8 | 0.000656491 | 28628-28630 | |
N | 119 | A119S | nonsyn | GCt | AGt | 12186 | 1 | 0.0000820614 | 28628-28630 | |
N | 119 | A119P | nonsyn | Gct | Cct | 816 | 816 | 1 | 28628-28630 | |
N | 119 | A119A | syn | gcT | gcC | 320 | 217 | 0.678125 | 28628-28630 | |
N | 119 | A119A | syn | gcT | gcA | 320 | 56 | 0.175 | 28628-28630 | |
N | 119 | A119A | syn | gcT | gcG | 320 | 47 | 0.146875 | 28628-28630 | |
N | 119 | A119V | nonsyn | gCt | gTt | 224 | 218 | 0.973214 | 28628-28630 | |
N | 119 | A119V | nonsyn | gCT | gTC | 224 | 4 | 0.0178571 | 28628-28630 | |
N | 119 | A119V | nonsyn | gCT | gTG | 224 | 2 | 0.00892857 | 28628-28630 | |
N | 119 | A119T | nonsyn | Gct | Act | 79 | 78 | 0.987342 | 28628-28630 | |
N | 119 | A119T | nonsyn | GcT | AcG | 79 | 1 | 0.0126582 | 28628-28630 | |
N | 119 | A119D | nonsyn | gCt | gAt | 62 | 62 | 1 | 28628-28630 | |
N | 119 | A119F | nonsyn | GCt | TTt | 40 | 38 | 0.95 | 28628-28630 | |
N | 119 | A119F | nonsyn | GCT | TTC | 40 | 2 | 0.05 | 28628-28630 | |
N | 119 | A119G | nonsyn | gCt | gGt | 18 | 14 | 0.777778 | 28628-28630 | |
N | 119 | A119G | nonsyn | gCT | gGC | 18 | 2 | 0.111111 | 28628-28630 | |
N | 119 | A119G | nonsyn | gCT | gGG | 18 | 2 | 0.111111 | 28628-28630 | |
N | 119 | A119del | del | GCT | --- | 15 | 15 | 1 | 28628-28630 | |
N | 119 | A119del2 | del | GCt | --t | 3 | 1 | 0.333333 | 28628-28630 | |
N | 119 | A119del2 | del | GCT | --C | 3 | 1 | 0.333333 | 28628-28630 | |
N | 119 | A119del2 | del | GCT | A-- | 3 | 1 | 0.333333 | 28628-28630 | |
N | 119 | A119L | nonsyn | GCT | TTG | 2 | 2 | 1 | 28628-28630 | |
N | 119 | A119C | nonsyn | GCT | TGC | 2 | 2 | 1 | 28628-28630 | |
N | 119 | A119W | nonsyn | GCT | TGG | 2 | 2 | 1 | 28628-28630 | |
N | 119 | A119N | nonsyn | GCt | AAt | 2 | 2 | 1 | 28628-28630 | |
N | 119 | A119Y | nonsyn | GCt | TAt | 2 | 2 | 1 | 28628-28630 | |
N | 119 | A119X | nonsyn | GCT | TAA | 2 | 2 | 1 | 28628-28630 | |
N | 119 | A119E | nonsyn | gCT | gAA | 2 | 2 | 1 | 28628-28630 | |
N | 119 | A119del1 | del | Gct | -ct | 2 | 1 | 0.5 | 28628-28630 | |
N | 119 | A119del1 | del | GCt | -Tt | 2 | 1 | 0.5 | 28628-28630 |
Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
N | 119 | A119S | Gct | Tct | 12177 | 12186 | All | 0.002329 |
N | 119 | A119S | GcT | TcA | 8 | 12186 | All | 0.000002 |
N | 119 | A119S | GCt | AGt | 1 | 12186 | All | 0 |
N | 119 | A119S | Gct | Tct | 5272 | 5278 | P.2 | 0.983949 |
N | 119 | A119S | GcT | TcA | 6 | 5278 | P.2 | 0.00112 |
N | 119 | A119P | Gct | Cct | 816 | 816 | All | 0.000156 |
N | 119 | A119P | Gct | Cct | 786 | 786 | C.37 | 0.091226 |
N | 119 | A119S | Gct | Tct | 738 | 738 | B.1.617.2 | 0.002779 |
N | 119 | A119S | Gct | Tct | 511 | 511 | B.1.1.7 | 0.000457 |
N | 119 | A119S | Gct | Tct | 507 | 507 | AY.42 | 0.020397 |
N | 119 | A119S | Gct | Tct | 364 | 364 | B.1.551 | 0.469677 |
N | 119 | A119A | gcT | gcC | 217 | 320 | All | 0.000042 |
N | 119 | A119A | gcT | gcA | 56 | 320 | All | 0.000011 |
N | 119 | A119A | gcT | gcG | 47 | 320 | All | 0.000009 |
N | 119 | A119S | Gct | Tct | 316 | 316 | AY.4 | 0.000492 |
N | 119 | A119S | Gct | Tct | 283 | 283 | AY.43 | 0.001254 |
N | 119 | A119S | Gct | Tct | 275 | 275 | B.1.1 | 0.004989 |
N | 119 | A119S | Gct | Tct | 261 | 261 | AY.103 | 0.001621 |
N | 119 | A119V | gCt | gTt | 218 | 224 | All | 0.000042 |
N | 119 | A119V | gCT | gTC | 4 | 224 | All | 0.000001 |
N | 119 | A119V | gCT | gTG | 2 | 224 | All | 0 |
N | 119 | A119S | Gct | Tct | 221 | 221 | B.1.618 | 0.891129 |
N | 119 | A119S | Gct | Tct | 219 | 219 | AY.5 | 0.004522 |
N | 119 | A119S | Gct | Tct | 169 | 169 | AY.44 | 0.001029 |
N | 119 | A119S | Gct | Tct | 167 | 167 | B.1 | 0.00153 |
N | 119 | A119S | Gct | Tct | 163 | 163 | C.36.1 | 0.676349 |
N | 119 | A119S | Gct | Tct | 134 | 134 | AY.46.4 | 0.022043 |
N | 119 | A119S | Gct | Tct | 127 | 127 | AY.39.1 | 0.005031 |
N | 119 | A119S | Gct | Tct | 116 | 116 | B.1.459 | 0.473469 |
N | 119 | A119S | Gct | Tct | 104 | 104 | AY.34 | 0.010084 |
N | 119 | A119S | Gct | Tct | 101 | 101 | P.1 | 0.001591 |
N | 119 | A119S | Gct | Tct | 94 | 94 | AY.98 | 0.007426 |
N | 119 | A119S | Gct | Tct | 85 | 85 | AY.25 | 0.000511 |
N | 119 | A119A | gcT | gcC | 59 | 85 | AY.4 | 0.000092 |
N | 119 | A119A | gcT | gcA | 24 | 85 | AY.4 | 0.000037 |
N | 119 | A119A | gcT | gcG | 2 | 85 | AY.4 | 0.000003 |
N | 119 | A119V | gCt | gTt | 84 | 84 | B.1.8 | 0.16568 |
N | 119 | A119S | Gct | Tct | 80 | 80 | AY.111 | 0.014652 |
N | 119 | A119T | Gct | Act | 78 | 79 | All | 0.000015 |
N | 119 | A119T | GcT | AcG | 1 | 79 | All | 0 |
N | 119 | A119S | Gct | Tct | 78 | 78 | AY.102 | 0.002068 |
N | 119 | A119S | Gct | Tct | 70 | 70 | AY.3 | 0.000696 |
N | 119 | A119S | Gct | Tct | 69 | 69 | B.1.177.4 | 0.014563 |
N | 119 | A119D | gCt | gAt | 62 | 62 | All | 0.000012 |
N | 119 | A119S | Gct | Tct | 62 | 62 | B.1.427 | 0.003131 |
N | 119 | A119S | Gct | Tct | 60 | 60 | AY.20 | 0.002332 |
N | 119 | A119S | Gct | Tct | 57 | 57 | B.1.1.49 | 1 |
N | 119 | A119S | Gct | Tct | 55 | 55 | B.1.1.334 | 0.901639 |
N | 119 | A119S | Gct | Tct | 53 | 53 | B.1.177 | 0.000698 |
N | 119 | A119S | Gct | Tct | 47 | 47 | AY.26 | 0.001331 |
N | 119 | A119S | Gct | Tct | 46 | 46 | AY.39 | 0.001137 |
N | 119 | A119S | Gct | Tct | 46 | 46 | B.1.2 | 0.000405 |
N | 119 | A119S | Gct | Tct | 43 | 43 | B.1.1.28 | 0.013383 |
N | 119 | A119F | GCt | TTt | 38 | 40 | All | 0.000007 |
N | 119 | A119F | GCT | TTC | 2 | 40 | All | 0 |
N | 119 | A119S | Gct | Tct | 40 | 40 | AY.36 | 0.005929 |
N | 119 | A119S | Gct | Tct | 39 | 39 | AY.13 | 0.006278 |
N | 119 | A119S | Gct | Tct | 36 | 36 | AY.100 | 0.001656 |
N | 119 | A119S | Gct | Tct | 36 | 36 | Q.5 | 0.610169 |
N | 119 | A119S | Gct | Tct | 35 | 35 | B.1.1.214 | 0.001941 |
N | 119 | A119S | Gct | Tct | 34 | 34 | AY.46.6 | 0.002455 |
N | 119 | A119S | Gct | Tct | 34 | 34 | B.1.258 | 0.002263 |
N | 119 | A119A | gcT | gcC | 14 | 32 | B.1.1.7 | 0.000013 |
N | 119 | A119A | gcT | gcG | 13 | 32 | B.1.1.7 | 0.000012 |
N | 119 | A119A | gcT | gcA | 5 | 32 | B.1.1.7 | 0.000004 |
N | 119 | A119S | Gct | Tct | 31 | 31 | AY.119 | 0.001095 |
N | 119 | A119V | gCt | gTt | 27 | 27 | AY.4 | 0.000042 |
N | 119 | A119S | Gct | Tct | 27 | 27 | B.1.582 | 0.013248 |
N | 119 | A119S | Gct | Tct | 26 | 26 | B.1.160 | 0.000811 |
N | 119 | A119S | Gct | Tct | 24 | 24 | AY.120 | 0.000892 |
N | 119 | A119V | gCt | gTt | 24 | 24 | B.1.1.7 | 0.000021 |
N | 119 | A119S | Gct | Tct | 23 | 23 | AY.5.4 | 0.006364 |
N | 119 | A119A | gcT | gcC | 22 | 22 | B.1.36 | 0.00321 |
N | 119 | A119S | Gct | Tct | 21 | 21 | AY.33 | 0.001402 |
N | 119 | A119A | gcT | gcC | 19 | 21 | AY.47 | 0.000591 |
N | 119 | A119A | gcT | gcG | 2 | 21 | AY.47 | 0.000062 |
N | 119 | A119S | Gct | Tct | 20 | 20 | B.1.36 | 0.002918 |
N | 119 | A119S | Gct | Tct | 20 | 20 | B.1.621 | 0.00177 |
N | 119 | A119S | Gct | Tct | 19 | 19 | AY.4.3 | 0.015993 |
N | 119 | A119S | Gct | Tct | 19 | 19 | AY.46 | 0.001978 |
N | 119 | A119S | Gct | Tct | 19 | 19 | B.1.351 | 0.000565 |
N | 119 | A119G | gCt | gGt | 14 | 18 | All | 0.000003 |
N | 119 | A119G | gCT | gGG | 2 | 18 | All | 0 |
N | 119 | A119G | gCT | gGC | 2 | 18 | All | 0 |
N | 119 | A119T | Gct | Act | 18 | 18 | AY.4 | 0.000028 |
N | 119 | A119S | Gct | Tct | 18 | 18 | AY.61 | 0.001886 |
N | 119 | A119S | Gct | Tct | 18 | 18 | B.1.243 | 0.001253 |
N | 119 | A119S | Gct | Tct | 17 | 17 | B.1.146 | 0.072034 |
N | 119 | A119S | Gct | Tct | 17 | 17 | P.1.14 | 0.000813 |
N | 119 | A119S | Gct | Tct | 16 | 16 | AY.45 | 0.001947 |
N | 119 | A119S | Gct | Tct | 16 | 16 | C.37 | 0.001857 |
N | 119 | A119del | GCT | --- | 15 | 15 | All | 0.000003 |
N | 119 | A119F | GCt | TTt | 15 | 15 | AY.39 | 0.000371 |
N | 119 | A119S | Gct | Tct | 15 | 15 | AY.91 | 0.010957 |
N | 119 | A119D | gCt | gAt | 15 | 15 | B.1.1.7 | 0.000013 |
N | 119 | A119S | Gct | Tct | 14 | 14 | AY.9.1 | 0.001172 |
N | 119 | A119S | Gct | Tct | 13 | 13 | AY.3.1 | 0.001108 |
N | 119 | A119S | Gct | Tct | 13 | 13 | AY.98.1 | 0.00063 |
N | 119 | A119D | gCt | gAt | 13 | 13 | B.1.1.397 | 0.029279 |
N | 119 | A119S | Gct | Tct | 12 | 12 | AY.23 | 0.000837 |
N | 119 | A119A | gcT | gcC | 9 | 12 | B.1 | 0.000082 |
N | 119 | A119A | gcT | gcA | 3 | 12 | B.1 | 0.000027 |
N | 119 | A119S | Gct | Tct | 12 | 12 | B.1.526 | 0.000282 |
N | 119 | A119A | gcT | gcC | 5 | 11 | AY.43 | 0.000022 |
N | 119 | A119A | gcT | gcA | 4 | 11 | AY.43 | 0.000018 |
N | 119 | A119A | gcT | gcG | 2 | 11 | AY.43 | 0.000009 |
N | 119 | A119S | Gct | Tct | 11 | 11 | B.1.429 | 0.000259 |
N | 119 | A119S | Gct | Tct | 10 | 10 | AY.106 | 0.003349 |
N | 119 | A119S | Gct | Tct | 10 | 10 | AY.27 | 0.000647 |
N | 119 | A119S | Gct | Tct | 10 | 10 | C.36 | 0.009107 |
N | 119 | A119A | gcT | gcC | 9 | 9 | AY.44 | 0.000055 |
N | 119 | A119S | Gct | Tct | 9 | 9 | B.1.1.12 | 0.067164 |
N | 119 | A119S | Gct | Tct | 9 | 9 | B.1.1.519 | 0.000357 |
N | 119 | A119S | Gct | Tct | 9 | 9 | B.1.221 | 0.000639 |
N | 119 | A119S | Gct | Tct | 9 | 9 | B.1.258.17 | 0.000936 |
N | 119 | A119T | Gct | Act | 9 | 9 | B.1.36.21 | 0.019438 |
N | 119 | A119A | gcT | gcG | 9 | 9 | B.1.525 | 0.001018 |
N | 119 | A119P | Gct | Cct | 9 | 9 | C.37.1 | 0.02356 |
N | 119 | A119V | gCt | gTt | 9 | 9 | D.2 | 0.000675 |
N | 119 | A119S | Gct | Tct | 9 | 9 | D.2 | 0.000675 |
N | 119 | A119S | Gct | Tct | 8 | 8 | AY.29 | 0.000126 |
N | 119 | A119F | GCt | TTt | 8 | 8 | AY.4 | 0.000012 |
N | 119 | A119D | gCt | gAt | 8 | 8 | AY.4 | 0.000012 |
N | 119 | A119A | gcT | gcC | 8 | 8 | B.1.258 | 0.000532 |
N | 119 | A119S | Gct | Tct | 8 | 8 | B.1.381 | 0.0625 |
N | 119 | A119S | Gct | Tct | 8 | 8 | B.1.596 | 0.000697 |
N | 119 | A119A | gcT | gcC | 6 | 8 | B.1.617.2 | 0.000023 |
N | 119 | A119A | gcT | gcA | 2 | 8 | B.1.617.2 | 0.000008 |
N | 119 | A119S | Gct | Tct | 7 | 7 | AY.114 | 0.001618 |
N | 119 | A119S | Gct | Tct | 7 | 7 | AY.117 | 0.000592 |
N | 119 | A119A | gcT | gcA | 7 | 7 | AY.16 | 0.002658 |
N | 119 | A119A | gcT | gcC | 5 | 7 | AY.20 | 0.000194 |
N | 119 | A119A | gcT | gcG | 2 | 7 | AY.20 | 0.000078 |
N | 119 | A119S | Gct | Tct | 7 | 7 | AY.47 | 0.000218 |
N | 119 | A119S | Gct | Tct | 7 | 7 | AY.5.3 | 0.002362 |
N | 119 | A119S | Gct | Tct | 7 | 7 | B.1.1.225 | 0.05036 |
N | 119 | A119A | gcT | gcC | 7 | 7 | B.1.1.28 | 0.002179 |
N | 119 | A119S | Gct | Tct | 7 | 7 | B.1.1.359 | 0.194444 |
N | 119 | A119S | Gct | Tct | 7 | 7 | B.1.1.365 | 0.039106 |
N | 119 | A119S | Gct | Tct | 7 | 7 | B.1.1.374 | 0.016627 |
N | 119 | A119T | Gct | Act | 7 | 7 | B.1.1.7 | 0.000006 |
N | 119 | A119S | Gct | Tct | 7 | 7 | P.1.15 | 0.001626 |
N | 119 | A119S | Gct | Tct | 6 | 6 | A.2 | 0.003971 |
N | 119 | A119S | Gct | Tct | 6 | 6 | AY.108 | 0.006615 |
N | 119 | A119S | Gct | Tct | 6 | 6 | AY.113 | 0.000854 |
N | 119 | A119A | gcT | gcC | 6 | 6 | AY.25 | 0.000036 |
N | 119 | A119S | Gct | Tct | 6 | 6 | AY.4.2 | 0.00013 |
N | 119 | A119S | Gct | Tct | 6 | 6 | B.1.1.1 | 0.00196 |
N | 119 | A119S | Gct | Tct | 6 | 6 | B.1.1.176 | 0.002636 |
N | 119 | A119S | Gct | Tct | 6 | 6 | B.1.1.306 | 0.00263 |
N | 119 | A119S | Gct | Tct | 6 | 6 | B.1.311 | 0.001647 |
N | 119 | A119S | Gct | Tct | 6 | 6 | B.1.36.8 | 0.006 |
N | 119 | A119A | gcT | gcG | 3 | 6 | P.1 | 0.000047 |
N | 119 | A119A | gcT | gcC | 2 | 6 | P.1 | 0.000032 |
N | 119 | A119A | gcT | gcA | 1 | 6 | P.1 | 0.000016 |
N | 119 | A119T | Gct | Act | 5 | 5 | AY.120 | 0.000186 |
N | 119 | A119S | Gct | Tct | 5 | 5 | AY.16.1 | 0.00235 |
N | 119 | A119G | gCt | gGt | 5 | 5 | AY.4 | 0.000008 |
N | 119 | A119S | Gct | Tct | 5 | 5 | AY.46.1 | 0.005133 |
N | 119 | A119S | Gct | Tct | 5 | 5 | AY.9 | 0.000338 |
N | 119 | A119V | gCt | gTt | 5 | 5 | B.1.177.48 | 0.015625 |
N | 119 | A119S | Gct | Tct | 5 | 5 | B.1.177.7 | 0.000824 |
N | 119 | A119A | gcT | gcC | 5 | 5 | B.1.243 | 0.000348 |
N | 119 | A119S | Gct | Tct | 4 | 5 | B.1.617.1 | 0.000516 |
N | 119 | A119S | GCt | AGt | 1 | 5 | B.1.617.1 | 0.000129 |
N | 119 | A119G | gCt | gGt | 5 | 5 | P.1 | 0.000079 |
N | 119 | A119D | gCt | gAt | 4 | 4 | 0.222222 | |
N | 119 | A119S | Gct | Tct | 2 | 4 | 0.111111 | |
N | 119 | A119G | gCT | gGG | 2 | 4 | 0.111111 | |
N | 119 | A119V | gCT | gTG | 2 | 4 | 0.111111 | |
N | 119 | A119A | gcT | gcA | 2 | 4 | 0.111111 | |
N | 119 | A119G | gCT | gGC | 2 | 4 | 0.111111 | |
N | 119 | A119S | GcT | TcA | 2 | 4 | 0.111111 | |
N | 119 | A119V | gCT | gTC | 2 | 4 | 0.111111 | |
N | 119 | A119A | gcT | gcG | 2 | 4 | 0.111111 | |
N | 119 | A119S | Gct | Tct | 4 | 4 | AY.118 | 0.000251 |
N | 119 | A119T | Gct | Act | 4 | 4 | AY.20 | 0.000155 |
N | 119 | A119F | GCt | TTt | 4 | 4 | AY.25 | 0.000024 |
N | 119 | A119A | gcT | gcC | 4 | 4 | AY.3 | 0.00004 |
N | 119 | A119S | Gct | Tct | 4 | 4 | AY.4.5 | 0.00043 |
N | 119 | A119V | gCt | gTt | 4 | 4 | AY.43 | 0.000018 |
N | 119 | A119S | Gct | Tct | 4 | 4 | AY.75 | 0.000224 |
N | 119 | A119S | Gct | Tct | 4 | 4 | AY.84 | 0.00175 |
N | 119 | A119S | Gct | Tct | 4 | 4 | AY.99.2 | 0.000369 |
N | 119 | A119V | gCt | gTt | 4 | 4 | B.1 | 0.000037 |
N | 119 | A119V | gCt | gTt | 4 | 4 | B.1.1 | 0.000073 |
N | 119 | A119S | Gct | Tct | 4 | 4 | B.1.1.261 | 0.034483 |
N | 119 | A119S | Gct | Tct | 4 | 4 | B.1.1.302 | 0.008299 |
N | 119 | A119P | Gct | Cct | 4 | 4 | B.1.1.369 | 0.001785 |
N | 119 | A119T | Gct | Act | 4 | 4 | B.1.1.519 | 0.000159 |
N | 119 | A119S | Gct | Tct | 4 | 4 | B.1.177.32 | 0.005398 |
N | 119 | A119S | Gct | Tct | 4 | 4 | B.1.177.82 | 0.001909 |
N | 119 | A119A | gcT | gcC | 4 | 4 | B.1.221 | 0.000284 |
N | 119 | A119D | gCt | gAt | 4 | 4 | B.1.617.2 | 0.000015 |
N | 119 | A119S | Gct | Tct | 4 | 4 | P.1.12 | 0.001936 |
N | 119 | A119S | Gct | Tct | 4 | 4 | P.1.17 | 0.000647 |
N | 119 | A119del2 | GCT | --C | 1 | 3 | All | 0 |
N | 119 | A119del2 | GCT | A-- | 1 | 3 | All | 0 |
N | 119 | A119del2 | GCt | --t | 1 | 3 | All | 0 |
N | 119 | A119S | Gct | Tct | 3 | 3 | AY.109 | 0.002219 |
N | 119 | A119A | gcT | gcG | 3 | 3 | AY.118 | 0.000188 |
N | 119 | A119S | Gct | Tct | 3 | 3 | AY.121 | 0.000406 |
N | 119 | A119S | Gct | Tct | 3 | 3 | AY.21 | 0.005693 |
N | 119 | A119D | gCt | gAt | 3 | 3 | AY.44 | 0.000018 |
N | 119 | A119T | Gct | Act | 3 | 3 | AY.44 | 0.000018 |
N | 119 | A119S | Gct | Tct | 3 | 3 | AY.70 | 0.000626 |
N | 119 | A119S | Gct | Tct | 3 | 3 | AY.9.2 | 0.00011 |
N | 119 | A119A | gcT | gcA | 2 | 3 | B.1.1 | 0.000036 |
N | 119 | A119A | gcT | gcC | 1 | 3 | B.1.1 | 0.000018 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.1.222 | 0.000612 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.1.33 | 0.001263 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.1.362 | 0.016854 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.1.376 | 0.017857 |
N | 119 | A119V | gCt | gTt | 3 | 3 | B.1.1.417 | 0.008108 |
N | 119 | A119P | Gct | Cct | 3 | 3 | B.1.1.7 | 0.000003 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.1.70 | 0.001023 |
N | 119 | A119V | gCt | gTt | 3 | 3 | B.1.177 | 0.00004 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.279 | 0.001541 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.349 | 0.002144 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.36.31 | 0.005254 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.367 | 0.002377 |
N | 119 | A119A | gcT | gcC | 3 | 3 | B.1.389 | 0.003006 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.39 | 0.011719 |
N | 119 | A119T | Gct | Act | 3 | 3 | B.1.429 | 0.000071 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.438.1 | 0.000322 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.525 | 0.000339 |
N | 119 | A119del | GCT | --- | 3 | 3 | B.1.617.2 | 0.000011 |
N | 119 | A119S | Gct | Tct | 3 | 3 | B.1.628 | 0.001057 |
N | 119 | A119A | gcT | gcG | 3 | 3 | B.1.91 | 0.006224 |
N | 119 | A119S | Gct | Tct | 3 | 3 | C.38 | 0.024194 |
N | 119 | A119S | Gct | Tct | 3 | 3 | P.1.10 | 0.000808 |
N | 119 | A119S | Gct | Tct | 3 | 3 | P.1.16 | 0.001122 |
N | 119 | A119F | GCt | TTt | 3 | 3 | P.2 | 0.00056 |
N | 119 | A119S | Gct | Tct | 3 | 3 | P.6 | 0.009434 |
N | 119 | A119E | gCT | gAA | 2 | 2 | 0.111111 | |
N | 119 | A119L | GCT | TTG | 2 | 2 | 0.111111 | |
N | 119 | A119W | GCT | TGG | 2 | 2 | 0.111111 | |
N | 119 | A119C | GCT | TGC | 2 | 2 | 0.111111 | |
N | 119 | A119X | GCT | TAA | 2 | 2 | 0.111111 | |
N | 119 | A119F | GCT | TTC | 2 | 2 | 0.111111 | |
N | 119 | A119Y | GCt | TAt | 2 | 2 | 0.111111 | |
N | 119 | A119V | gCt | gTt | 2 | 2 | A.5 | 0.003846 |
N | 119 | A119X | GCT | TAA | 2 | 2 | All | 0 |
N | 119 | A119N | GCt | AAt | 2 | 2 | All | 0 |
N | 119 | A119W | GCT | TGG | 2 | 2 | All | 0 |
N | 119 | A119Y | GCt | TAt | 2 | 2 | All | 0 |
N | 119 | A119L | GCT | TTG | 2 | 2 | All | 0 |
N | 119 | A119C | GCT | TGC | 2 | 2 | All | 0 |
N | 119 | A119E | gCT | gAA | 2 | 2 | All | 0 |
N | 119 | A119del1 | Gct | -ct | 1 | 2 | All | 0 |
N | 119 | A119del1 | GCt | -Tt | 1 | 2 | All | 0 |
N | 119 | A119A | gcT | gcC | 2 | 2 | AY.103 | 0.000012 |
N | 119 | A119T | Gct | Act | 2 | 2 | AY.103 | 0.000012 |
N | 119 | A119A | gcT | gcG | 2 | 2 | AY.106 | 0.00067 |
N | 119 | A119F | GCt | TTt | 2 | 2 | AY.3 | 0.00002 |
N | 119 | A119D | gCt | gAt | 2 | 2 | AY.3 | 0.00002 |
N | 119 | A119S | Gct | Tct | 2 | 2 | AY.37 | 0.000632 |
N | 119 | A119V | gCt | gTt | 2 | 2 | AY.44 | 0.000012 |
N | 119 | A119S | Gct | Tct | 2 | 2 | AY.48 | 0.00093 |
N | 119 | A119S | Gct | Tct | 2 | 2 | AY.54 | 0.000191 |
N | 119 | A119A | gcT | gcC | 2 | 2 | AY.54 | 0.000191 |
N | 119 | A119S | Gct | Tct | 2 | 2 | AY.6 | 0.000082 |
N | 119 | A119S | Gct | Tct | 2 | 2 | AY.7 | 0.000392 |
N | 119 | A119S | Gct | Tct | 2 | 2 | AY.75.1 | 0.000361 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B | 0.000256 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.1.161 | 0.007067 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.1.284 | 0.000215 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B.1.1.307 | 0.005063 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.1.316 | 0.00185 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.1.339 | 0.021053 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B.1.1.348 | 0.001592 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.1.434 | 0.000697 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.1.50 | 0.001358 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B.1.160.10 | 0.016129 |
N | 119 | A119A | gcT | gcC | 2 | 2 | B.1.177 | 0.000026 |
N | 119 | A119T | Gct | Act | 2 | 2 | B.1.177 | 0.000026 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B.1.177.81 | 0.000379 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.240 | 0.000431 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B.1.243 | 0.000139 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.258.14 | 0.001961 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B.1.258.17 | 0.000208 |
N | 119 | A119T | Gct | Act | 2 | 2 | B.1.351 | 0.000059 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.36.29 | 0.001035 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.396 | 0.001411 |
N | 119 | A119V | gCt | gTt | 2 | 2 | B.1.429 | 0.000047 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.466.2 | 0.000782 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.524 | 0.002813 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.552 | 0.030303 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.561 | 0.000794 |
N | 119 | A119S | Gct | Tct | 2 | 2 | B.1.597 | 0.009259 |
N | 119 | A119F | GCt | TTt | 2 | 2 | B.1.617.2 | 0.000008 |
N | 119 | A119T | GcT | AcG | 1 | 2 | B.1.617.2 | 0.000004 |
N | 119 | A119T | Gct | Act | 1 | 2 | B.1.617.2 | 0.000004 |
N | 119 | A119T | Gct | Act | 2 | 2 | P.1 | 0.000032 |
N | 119 | A119del | GCT | --- | 2 | 2 | P.1 | 0.000032 |
N | 119 | A119A | gcT | gcC | 1 | 2 | P.1.14 | 0.000048 |
N | 119 | A119A | gcT | gcG | 1 | 2 | P.1.14 | 0.000048 |
N | 119 | A119S | Gct | Tct | 2 | 2 | P.1.4 | 0.001953 |
N | 119 | A119S | Gct | Tct | 2 | 2 | Q.1 | 0.000253 |
N | 119 | A119S | Gct | Tct | 2 | 2 | Q.4 | 0.00091 |
N | 119 | A119V | gCt | gTt | 2 | 2 | R.1 | 0.00018 |
N | 119 | A119A | gcT | gcC | 1 | 1 | A | 0.000387 |
N | 119 | A119S | Gct | Tct | 1 | 1 | A | 0.000387 |
N | 119 | A119A | gcT | gcC | 1 | 1 | A.2.5.1 | 0.004808 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.1 | 0.000396 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.102 | 0.000027 |
N | 119 | A119V | gCt | gTt | 1 | 1 | AY.103 | 0.000006 |
N | 119 | A119F | GCt | TTt | 1 | 1 | AY.103 | 0.000006 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.116 | 0.000287 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.116.1 | 0.000311 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.118 | 0.000063 |
N | 119 | A119del | GCT | --- | 1 | 1 | AY.118 | 0.000063 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.119 | 0.000035 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.12 | 0.000316 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.120 | 0.000037 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.120.2.1 | 0.000498 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.14 | 0.000088 |
N | 119 | A119T | Gct | Act | 1 | 1 | AY.16 | 0.00038 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.19 | 0.00114 |
N | 119 | A119G | gCt | gGt | 1 | 1 | AY.23 | 0.00007 |
N | 119 | A119V | gCt | gTt | 1 | 1 | AY.25 | 0.000006 |
N | 119 | A119P | Gct | Cct | 1 | 1 | AY.25 | 0.000006 |
N | 119 | A119T | Gct | Act | 1 | 1 | AY.25 | 0.000006 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.26 | 0.000028 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.27 | 0.000065 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.29 | 0.000016 |
N | 119 | A119T | Gct | Act | 1 | 1 | AY.29 | 0.000016 |
N | 119 | A119del | GCT | --- | 1 | 1 | AY.3 | 0.00001 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.32 | 0.000532 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.34.1 | 0.00051 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.35 | 0.000233 |
N | 119 | A119V | gCt | gTt | 1 | 1 | AY.35 | 0.000233 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.36 | 0.000148 |
N | 119 | A119P | Gct | Cct | 1 | 1 | AY.39 | 0.000025 |
N | 119 | A119del1 | Gct | -ct | 1 | 1 | AY.39 | 0.000025 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.39.2 | 0.001541 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.4.2 | 0.000022 |
N | 119 | A119T | Gct | Act | 1 | 1 | AY.42 | 0.00004 |
N | 119 | A119G | gCt | gGt | 1 | 1 | AY.44 | 0.000006 |
N | 119 | A119del2 | GCT | A-- | 1 | 1 | AY.44 | 0.000006 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.46 | 0.000104 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.5 | 0.000021 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.5 | 0.000021 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.5.1 | 0.003759 |
N | 119 | A119A | gcT | gcG | 1 | 1 | AY.52 | 0.000814 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.59 | 0.00053 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.6 | 0.000041 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.60 | 0.000938 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.61 | 0.000105 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.62 | 0.000436 |
N | 119 | A119V | gCt | gTt | 1 | 1 | AY.62 | 0.000436 |
N | 119 | A119del | GCT | --- | 1 | 1 | AY.67 | 0.000464 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.67 | 0.000464 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.69 | 0.000187 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.7.1 | 0.000113 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.74 | 0.000116 |
N | 119 | A119P | Gct | Cct | 1 | 1 | AY.75 | 0.000056 |
N | 119 | A119A | gcT | gcA | 1 | 1 | AY.75 | 0.000056 |
N | 119 | A119A | gcT | gcA | 1 | 1 | AY.78 | 0.001541 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.79 | 0.001211 |
N | 119 | A119D | gCt | gAt | 1 | 1 | AY.8 | 0.000606 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.88 | 0.000884 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.9.1 | 0.000084 |
N | 119 | A119T | Gct | Act | 1 | 1 | AY.9.1 | 0.000084 |
N | 119 | A119P | Gct | Cct | 1 | 1 | AY.9.1 | 0.000084 |
N | 119 | A119P | Gct | Cct | 1 | 1 | AY.9.2 | 0.000037 |
N | 119 | A119A | gcT | gcC | 1 | 1 | AY.92 | 0.000287 |
N | 119 | A119T | Gct | Act | 1 | 1 | AY.98.1 | 0.000048 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.99 | 0.001049 |
N | 119 | A119S | Gct | Tct | 1 | 1 | AY.99.1 | 0.001553 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B | 0.000128 |
N | 119 | A119P | Gct | Cct | 1 | 1 | B.1 | 0.000009 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1 | 0.000009 |
N | 119 | A119D | gCt | gAt | 1 | 1 | B.1 | 0.000009 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.1 | 0.000018 |
N | 119 | A119del | GCT | --- | 1 | 1 | B.1.1 | 0.000018 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.10 | 0.001115 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.1.158 | 0.012195 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.171 | 0.003676 |
N | 119 | A119F | GCt | TTt | 1 | 1 | B.1.1.216 | 0.00089 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.230 | 0.009174 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.237 | 0.005405 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.25 | 0.000569 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.277 | 0.000759 |
N | 119 | A119P | Gct | Cct | 1 | 1 | B.1.1.279 | 0.001121 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.297 | 0.002237 |
N | 119 | A119A | gcT | gcG | 1 | 1 | B.1.1.306 | 0.000438 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.1.306 | 0.000438 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.1.306 | 0.000438 |
N | 119 | A119D | gCt | gAt | 1 | 1 | B.1.1.306 | 0.000438 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.1.317 | 0.000412 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.318 | 0.000302 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.356 | 0.008547 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.368 | 0.003086 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.37 | 0.000193 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.372 | 0.000689 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.1.372 | 0.000689 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.388 | 0.045455 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.1.39 | 0.00051 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.398 | 0.003226 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.1.410 | 0.037037 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.411 | 0.014706 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.416 | 0.000905 |
N | 119 | A119del | GCT | --- | 1 | 1 | B.1.1.420 | 0.001006 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.44 | 0.00241 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.448 | 0.002033 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.51 | 0.001718 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.1.518 | 0.006329 |
N | 119 | A119A | gcT | gcA | 1 | 1 | B.1.1.519 | 0.00004 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.1.519 | 0.00004 |
N | 119 | A119D | gCt | gAt | 1 | 1 | B.1.1.519 | 0.00004 |
N | 119 | A119del2 | GCt | --t | 1 | 1 | B.1.1.7 | 0.000001 |
N | 119 | A119del | GCT | --- | 1 | 1 | B.1.1.7 | 0.000001 |
N | 119 | A119G | gCt | gGt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 119 | A119N | GCt | AAt | 1 | 1 | B.1.1.7 | 0.000001 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.1.70 | 0.000341 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.111 | 0.001175 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.147 | 0.000756 |
N | 119 | A119D | gCt | gAt | 1 | 1 | B.1.160 | 0.000031 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.160.28 | 0.002924 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.160.7 | 0.002079 |
N | 119 | A119P | Gct | Cct | 1 | 1 | B.1.177 | 0.000013 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.177.10 | 0.000878 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.177.20 | 0.001517 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.177.35 | 0.000691 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.177.44 | 0.000519 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.177.46 | 0.000918 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.177.58 | 0.001332 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.177.63 | 0.002703 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.177.69 | 0.001484 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.177.7 | 0.000165 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.177.75 | 0.001041 |
N | 119 | A119D | gCt | gAt | 1 | 1 | B.1.177.77 | 0.000726 |
N | 119 | A119del | GCT | --- | 1 | 1 | B.1.177.83 | 0.001481 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.177.83 | 0.001481 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.177.86 | 0.000183 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.2 | 0.000009 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.2 | 0.000009 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.2 | 0.000009 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.206 | 0.000816 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.210 | 0.002132 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.212 | 0.016667 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.23 | 0.006061 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.239 | 0.001221 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.240 | 0.000216 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.247 | 0.014925 |
N | 119 | A119P | Gct | Cct | 1 | 1 | B.1.258 | 0.000067 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.258.7 | 0.001912 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.276 | 0.016949 |
N | 119 | A119A | gcT | gcG | 1 | 1 | B.1.311 | 0.000275 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.349 | 0.000715 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.350 | 0.002933 |
N | 119 | A119G | gCt | gGt | 1 | 1 | B.1.351.3 | 0.000876 |
N | 119 | A119V | gCT | gTC | 1 | 1 | B.1.36 | 0.000146 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.36.10 | 0.004785 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.36.18 | 0.00042 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.36.29 | 0.000517 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.36.29 | 0.000517 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.36.8 | 0.001 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.391 | 0.001127 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.400 | 0.000429 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.400 | 0.000429 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.402 | 0.009804 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.402 | 0.009804 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.404 | 0.001302 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.407 | 0.035714 |
N | 119 | A119del | GCT | --- | 1 | 1 | B.1.415 | 0.014286 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.416 | 0.001269 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.420 | 0.010417 |
N | 119 | A119del | GCT | --- | 1 | 1 | B.1.427 | 0.00005 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.429 | 0.000024 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.438 | 0.006536 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.453 | 0.003236 |
N | 119 | A119F | GCt | TTt | 1 | 1 | B.1.459 | 0.004082 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.471 | 0.002732 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.492 | 0.007042 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.499 | 0.00105 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.509 | 0.000866 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.533 | 0.009615 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.568 | 0.001111 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.570 | 0.002941 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.574 | 0.002151 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.575 | 0.000303 |
N | 119 | A119A | gcT | gcC | 1 | 1 | B.1.576 | 0.000907 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.577 | 0.000687 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.588 | 0.00091 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.595 | 0.000261 |
N | 119 | A119V | gCt | gTt | 1 | 1 | B.1.600 | 0.005848 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.605 | 0.005952 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.609 | 0.000479 |
N | 119 | A119V | gCT | gTC | 1 | 1 | B.1.617.1 | 0.000129 |
N | 119 | A119P | Gct | Cct | 1 | 1 | B.1.617.2 | 0.000004 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.619 | 0.000871 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.623 | 0.000536 |
N | 119 | A119T | Gct | Act | 1 | 1 | B.1.628 | 0.000352 |
N | 119 | A119A | gcT | gcA | 1 | 1 | B.1.636 | 0.006711 |
N | 119 | A119S | Gct | Tct | 1 | 1 | B.1.76 | 0.011364 |
N | 119 | A119V | gCt | gTt | 1 | 1 | C.35 | 0.000774 |
N | 119 | A119S | Gct | Tct | 1 | 1 | C.35 | 0.000774 |
N | 119 | A119F | GCt | TTt | 1 | 1 | C.36.1 | 0.004149 |
N | 119 | A119V | gCt | gTt | 1 | 1 | C.36.3 | 0.000567 |
N | 119 | A119P | Gct | Cct | 1 | 1 | C.36.3.1 | 0.002717 |
N | 119 | A119P | Gct | Cct | 1 | 1 | C.39 | 0.018868 |
N | 119 | A119del2 | GCT | --C | 1 | 1 | P.1 | 0.000016 |
N | 119 | A119P | Gct | Cct | 1 | 1 | P.1 | 0.000016 |
N | 119 | A119N | GCt | AAt | 1 | 1 | P.1 | 0.000016 |
N | 119 | A119A | gcT | gcC | 1 | 1 | P.1.1 | 0.000318 |
N | 119 | A119S | Gct | Tct | 1 | 1 | P.1.1 | 0.000318 |
N | 119 | A119del | GCT | --- | 1 | 1 | P.1.10 | 0.000269 |
N | 119 | A119P | Gct | Cct | 1 | 1 | P.1.15 | 0.000232 |
N | 119 | A119V | gCt | gTt | 1 | 1 | P.1.15 | 0.000232 |
N | 119 | A119A | gcT | gcA | 1 | 1 | P.1.17 | 0.000162 |
N | 119 | A119del1 | GCt | -Tt | 1 | 1 | P.1.17 | 0.000162 |
N | 119 | A119S | Gct | Tct | 1 | 1 | P.1.7 | 0.000319 |
N | 119 | A119S | Gct | Tct | 1 | 1 | P.3 | 0.001595 |
N | 119 | A119S | Gct | Tct | 1 | 1 | P.7 | 0.004367 |
N | 119 | A119T | Gct | Act | 1 | 1 | Q.1 | 0.000126 |
N | 119 | A119V | gCt | gTt | 1 | 1 | Q.1 | 0.000126 |
N | 119 | A119S | Gct | Tct | 1 | 1 | Q.8 | 0.000165 |
N | 119 | A119A | gcT | gcA | 1 | 1 | Q.8 | 0.000165 |
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CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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