CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 116

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N116G116GsynggGggT385121000.54531328619-28621
N116G116GsynggGggA385117470.45364828619-28621
N116G116GsynggGggC385140.0010386928619-28621
N116G116del1delGgg-gg8080128619-28621
N116G116deldelGGG---2828128619-28621
N116G116VnonsyngGggTg18120.66666728619-28621
N116G116VnonsyngGGgTT1840.22222228619-28621
N116G116VnonsyngGGgTA1820.11111128619-28621
N116G116WnonsynGggTgg1212128619-28621
N116G116RnonsynGggAgg970.77777828619-28621
N116G116RnonsynGggCgg910.11111128619-28621
N116G116RnonsynGgGCgT910.11111128619-28621
N116G116SnonsynGgGAgT840.528619-28621
N116G116SnonsynGGGTCT820.2528619-28621
N116G116SnonsynGGgTCg820.2528619-28621
N116G116EnonsyngGggAg77128619-28621
N116G116AnonsyngGggCg630.528619-28621
N116G116AnonsyngGGgCT630.528619-28621
N116G116CnonsynGgGTgT44128619-28621
N116G116NnonsynGGGAAT320.66666728619-28621
N116G116NnonsynGGGAAC310.33333328619-28621
N116G116QnonsynGGgCAg22128619-28621
N116G116DnonsyngGGgAT22128619-28621
N116G116KnonsynGGgAAg22128619-28621
N116G116del2delGGg--g22128619-28621
N116G116PnonsynGGgCCg11128619-28621
N116G116YnonsynGGGTAT11128619-28621

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N116G116GggGggT21003851All0.000402
N116G116GggGggA17473851All0.000334
N116G116GggGggC43851All0.000001
N116G116GggGggT859859AY.270.055595
N116G116GggGggT548724B.1.1.70.000491
N116G116GggGggA176724B.1.1.70.000158
N116G116GggGggA483483B.1.5160.945205
N116G116GggGggA322322AY.920.092502
N116G116GggGggA83127AY.40.000129
N116G116GggGggT43127AY.40.000067
N116G116GggGggC1127AY.40.000002
N116G116GggGggT126126B.1.1470.095238
N116G116GggGggA114115B.1.1.2140.006322
N116G116GggGggT1115B.1.1.2140.000055
N116G116GggGggT5498B.1.617.20.000203
N116G116GggGggA4398B.1.617.20.000162
N116G116GggGggC198B.1.617.20.000004
N116G116del1Ggg-gg8080All0.000015
N116G116GggGggA6180B.10.000559
N116G116GggGggT1980B.10.000174
N116G116GggGggA7474B.1.5790.831461
N116G116del1Ggg-gg6666B.1.1.70.000059
N116G116GggGggT3457B.1.1770.000448
N116G116GggGggA2357B.1.1770.000303
N116G116GggGggT3152AY.430.000137
N116G116GggGggA2152AY.430.000093
N116G116GggGggA2746AY.440.000164
N116G116GggGggT1946AY.440.000116
N116G116GggGggT3840AY.1020.001008
N116G116GggGggA240AY.1020.000053
N116G116GggGggT3538B.1.4290.000824
N116G116GggGggA338B.1.4290.000071
N116G116GggGggA3535B.1.177.790.081967
N116G116GggGggA3333B.1.177.460.030303
N116G116delGGG---2828All0.000005
N116G116GggGggA1927AY.250.000114
N116G116GggGggT827AY.250.000048
N116G116GggGggT1425P.10.000221
N116G116GggGggA1125P.10.000173
N116G116GggGggA1324B.1.20.000114
N116G116GggGggT1124B.1.20.000097
N116G116GggGggT1519AY.1030.000093
N116G116GggGggA419AY.1030.000025
N116G116GggGggA1719AY.360.00252
N116G116GggGggT219AY.360.000296
N116G116GggGggA1619AY.390.000395
N116G116GggGggT319AY.390.000074
N116G116VgGggTg1218All0.000002
N116G116VgGGgTT418All0.000001
N116G116VgGGgTA218All0
N116G116GggGggT1317AY.98.10.00063
N116G116GggGggA417AY.98.10.000194
N116G116GggGggT1717B.1.177.850.092391
N116G116GggGggT1516B.1.5950.003914
N116G116GggGggA116B.1.5950.000261
N116G116GggGggA1515B.1.258.170.00156
N116G116GggGggT1314AY.30.000129
N116G116GggGggA114AY.30.00001
N116G116GggGggT1014B.1.10.000181
N116G116GggGggA414B.1.10.000073
N116G116WGggTgg1212All0.000002
N116G116GggGggA912B.1.5260.000212
N116G116GggGggT312B.1.5260.000071
N116G116GggGggT1010B.1.1280.006353
N116G116GggGggA810B.1.5250.000905
N116G116GggGggT210B.1.5250.000226
N116G116RGggAgg79All0.000001
N116G116RGggCgg19All0
N116G116RGgGCgT19All0
N116G116SGgGAgT48All0.000001
N116G116SGGgTCg28All0
N116G116SGGGTCT28All0
N116G116GggGggT68AY.200.000233
N116G116GggGggA28AY.200.000078
N116G116GggGggA78AY.460.000729
N116G116GggGggT18AY.460.000104
N116G116GggGggA58AY.90.000338
N116G116GggGggT38AY.90.000203
N116G116EgGggAg77All0.000001
N116G116GggGggT67AY.4.2.10.000894
N116G116GggGggA17AY.4.2.10.000149
N116G116SGGgTCg260.111111
N116G116VgGGgTA260.111111
N116G116SGGGTCT260.111111
N116G116VgGggTg260.111111
N116G116VgGGgTT260.111111
N116G116SGgGAgT260.111111
N116G116AgGGgCT36All0.000001
N116G116AgGggCg36All0.000001
N116G116GggGggA66AY.140.000528
N116G116GggGggT66AY.230.000418
N116G116GggGggT66AY.7.10.000676
N116G116delGGG---66P.10.000095
N116G116GggGggA66Q.30.00087
N116G116GggGggT45AY.1190.000141
N116G116GggGggA15AY.1190.000035
N116G116GggGggT45AY.260.000113
N116G116GggGggA15AY.260.000028
N116G116GggGggT55AY.290.000079
N116G116GggGggT45AY.330.000267
N116G116GggGggA15AY.330.000067
N116G116GggGggA55B.1.1.1890.007564
N116G116GggGggA55B.1.110.30.003592
N116G116GggGggA35B.1.2430.000209
N116G116GggGggT25B.1.2430.000139
N116G116GggGggT55B.1.3660.02439
N116G116GggGggT35B.1.4270.000151
N116G116GggGggA25B.1.4270.000101
N116G116delGGG---55B.1.617.20.000019
N116G116CGgGTgT440.222222
N116G116GggGggT440.222222
N116G116AgGggCg240.111111
N116G116AgGGgCT240.111111
N116G116CGgGTgT44All0.000001
N116G116GggGggT44AY.1000.000184
N116G116GggGggT44B.1.1.2160.003562
N116G116GggGggT44B.1.1.2220.000816
N116G116GggGggT44B.1.1.670.018265
N116G116delGGG---44B.1.1.70.000004
N116G116GggGggT34B.1.2580.0002
N116G116GggGggA14B.1.2580.000067
N116G116GggGggT34P.1.140.000143
N116G116GggGggA14P.1.140.000048
N116G116GggGggA23A0.000774
N116G116GggGggT13A0.000387
N116G116NGGGAAT23All0
N116G116NGGGAAC13All0
N116G116GggGggA33AY.1050.001929
N116G116GggGggA33AY.1130.000427
N116G116GggGggA33AY.1160.00086
N116G116GggGggT33AY.160.001139
N116G116GggGggA23AY.400.001929
N116G116GggGggC13AY.400.000964
N116G116GggGggT33AY.450.000365
N116G116GggGggA23AY.470.000062
N116G116GggGggT13AY.470.000031
N116G116GggGggA23AY.9.20.000073
N116G116GggGggT13AY.9.20.000037
N116G116GggGggT33AY.980.000237
N116G116WGggTgg33B.10.000027
N116G116GggGggA33B.1.1.1700.003741
N116G116GggGggA33B.1.1.2980.002586
N116G116GggGggA23B.1.1600.000062
N116G116GggGggT13B.1.1600.000031
N116G116GggGggA33B.1.177.70.000495
N116G116del1Ggg-gg33B.1.177.820.001432
N116G116GggGggA33B.1.1820.021739
N116G116GggGggT33B.1.2400.000647
N116G116del1Ggg-gg33B.1.3510.000089
N116G116GggGggT23B.1.3510.000059
N116G116GggGggA13B.1.3510.00003
N116G116GggGggT33B.1.36.160.004274
N116G116GggGggT33B.1.3960.002117
N116G116EgGggAg220.111111
N116G116WGggTgg220.111111
N116G116DgGGgAT220.111111
N116G116NGGGAAT220.111111
N116G116KGGgAAg220.111111
N116G116RGggAgg220.111111
N116G116del2GGg--g22All0
N116G116QGGgCAg22All0
N116G116KGGgAAg22All0
N116G116DgGGgAT22All0
N116G116GggGggA22AY.1110.000366
N116G116GggGggT22AY.340.000194
N116G116GggGggT12AY.4.20.000022
N116G116GggGggA12AY.4.20.000022
N116G116GggGggA12AY.420.00004
N116G116GggGggT12AY.420.00004
N116G116del1Ggg-gg22AY.520.001629
N116G116GggGggA22AY.680.000547
N116G116VgGggTg22AY.700.000417
N116G116GggGggA22AY.9.2.10.003953
N116G116GggGggT22AY.950.001522
N116G116GggGggA22B0.000256
N116G116GggGggT22B.1.1.2370.010811
N116G116GggGggA12B.1.1.2940.001266
N116G116GggGggT12B.1.1.2940.001266
N116G116GggGggT22B.1.1.3350.025974
N116G116del1Ggg-gg22B.1.1600.000062
N116G116GggGggT22B.1.177.60.001953
N116G116GggGggA22B.1.177.600.000437
N116G116WGggTgg22B.1.20.000018
N116G116GggGggT22B.1.220.002635
N116G116GggGggT12B.1.2210.000071
N116G116GggGggA12B.1.2210.000071
N116G116GggGggA12B.1.2650.001271
N116G116GggGggT12B.1.2650.001271
N116G116GggGggA22B.1.3490.00143
N116G116GggGggT22B.1.36.290.001035
N116G116GggGggT22B.1.36.390.004435
N116G116GggGggT22B.1.617.30.00597
N116G116GggGggA22B.1.6370.000146
N116G116VgGggTg22D.20.00015
N116G116delGGG---22P.1.100.000539
N116G116YGGGTAT11All0
N116G116PGGgCCg11All0
N116G116GggGggT11AY.1010.00049
N116G116delGGG---11AY.1180.000063
N116G116GggGggA11AY.1180.000063
N116G116GggGggA11AY.1200.000037
N116G116GggGggT11AY.1210.000135
N116G116GggGggA11AY.210.001898
N116G116delGGG---11AY.30.00001
N116G116GggGggA11AY.3.10.000085
N116G116GggGggA11AY.300.000396
N116G116QGGgCAg11AY.440.000006
N116G116delGGG---11AY.440.000006
N116G116WGggTgg11AY.480.000465
N116G116GggGggA11AY.50.000021
N116G116GggGggT11AY.5.30.000337
N116G116GggGggT11AY.60.000041
N116G116delGGG---11AY.670.000464
N116G116GggGggT11AY.700.000209
N116G116WGggTgg11AY.710.000475
N116G116GggGggA11AY.750.000056
N116G116GggGggT11AY.75.10.00018
N116G116QGGgCAg11AY.790.001211
N116G116GggGggT11AY.840.000437
N116G116GggGggA11AY.99.20.000092
N116G116EgGggAg11B0.000128
N116G116RGggAgg11B.10.000009
N116G116VgGggTg11B.10.000009
N116G116EgGggAg11B.10.000009
N116G116PGGgCCg11B.1.10.000018
N116G116AgGGgCT11B.1.10.000018
N116G116delGGG---11B.1.10.000018
N116G116WGggTgg11B.1.10.000018
N116G116GggGggT11B.1.1.10.000327
N116G116GggGggA11B.1.1.100.001115
N116G116GggGggT11B.1.1.1610.003534
N116G116GggGggA11B.1.1.250.000569
N116G116GggGggT11B.1.1.2840.000107
N116G116GggGggT11B.1.1.3060.000438
N116G116GggGggT11B.1.1.3470.018182
N116G116GggGggT11B.1.1.3690.000446
N116G116GggGggT11B.1.1.3720.000689
N116G116GggGggA11B.1.1.3970.002252
N116G116GggGggT11B.1.1.4120.007634
N116G116delGGG---11B.1.1.4200.001006
N116G116GggGggT11B.1.1.4320.001266
N116G116GggGggT11B.1.1.4480.002033
N116G116GggGggA11B.1.1.510.001718
N116G116GggGggT11B.1.1.5190.00004
N116G116GggGggA11B.1.1.560.017857
N116G116YGGGTAT11B.1.1.70.000001
N116G116EgGggAg11B.1.1.70.000001
N116G116SGgGAgT11B.1.1.70.000001
N116G116GggGggC11B.1.1.700.000341
N116G116GggGggA11B.1.1.80.003584
N116G116GggGggA11B.1.177.110.001698
N116G116EgGggAg11B.1.177.210.000076
N116G116GggGggA11B.1.177.420.000894
N116G116del1Ggg-gg11B.1.177.60.000977
N116G116del2GGg--g11B.1.177.630.002703
N116G116GggGggT11B.1.177.810.000189
N116G116delGGG---11B.1.177.830.001481
N116G116RGggAgg11B.1.20.000009
N116G116SGgGAgT11B.1.20.000009
N116G116VgGGgTT11B.1.20.000009
N116G116delGGG---11B.1.20.000009
N116G116GggGggA11B.1.2060.000816
N116G116GggGggT11B.1.2100.002132
N116G116VgGggTg11B.1.2210.000071
N116G116RGggAgg11B.1.2210.000071
N116G116GggGggA11B.1.2320.000537
N116G116GggGggT11B.1.2340.000132
N116G116VgGggTg11B.1.2360.002053
N116G116GggGggA11B.1.2790.000514
N116G116EgGggAg11B.1.3510.00003
N116G116GggGggT11B.1.351.30.000876
N116G116VgGggTg11B.1.3560.001727
N116G116del1Ggg-gg11B.1.36.10.00114
N116G116RGggCgg11B.1.3750.00082
N116G116GggGggT11B.1.3980.002976
N116G116GggGggT11B.1.4090.000781
N116G116delGGG---11B.1.4150.014286
N116G116delGGG---11B.1.4270.00005
N116G116VgGggTg11B.1.4290.000024
N116G116GggGggA11B.1.4990.00105
N116G116GggGggA11B.1.5170.000427
N116G116GggGggA11B.1.5640.000426
N116G116GggGggA11B.1.5750.000303
N116G116WGggTgg11B.1.5900.004545
N116G116del1Ggg-gg11B.1.5960.000087
N116G116VgGggTg11B.1.617.20.000004
N116G116GggGggA11B.1.9.50.005682
N116G116GggGggT11B.3.10.001658
N116G116GggGggA11C.350.000774
N116G116GggGggA11C.370.000116
N116G116GggGggT11D.20.000075
N116G116GggGggA11L.10.001905
N116G116NGGGAAC11P.10.000016
N116G116RGggAgg11P.10.000016
N116G116del2GGg--g11P.10.000016
N116G116VgGGgTT11P.10.000016
N116G116RGggAgg11P.1.10.000318
N116G116GggGggT11P.1.10.000318
N116G116AgGggCg11P.1.10.000318
N116G116RGgGCgT11P.1.140.000048
N116G116delGGG---11P.1.170.000162
N116G116GggGggT11Q.40.000455
N116G116GggGggT11Q.80.000165
N116G116del1Ggg-gg11R.10.00009
N116G116WGggTgg11R.10.00009