CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 112

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N112Y112YsyntaCtaT950950128607-28609
N112Y112deldelTAC---1515128607-28609
N112Y112LnonsynTACCTG1440.28571428607-28609
N112Y112LnonsynTAcCTc1440.28571428607-28609
N112Y112LnonsyntACtTG1440.28571428607-28609
N112Y112LnonsynTACCTT1420.14285728607-28609
N112Y112HnonsynTacCac13100.76923128607-28609
N112Y112HnonsynTaCCaT1330.23076928607-28609
N112Y112XnonsyntaCtaG1150.45454528607-28609
N112Y112XnonsyntaCtaA1140.36363628607-28609
N112Y112XnonsyntACtGA1120.18181828607-28609
N112Y112FnonsyntActTc640.66666728607-28609
N112Y112QnonsynTaCCaG640.66666728607-28609
N112Y112QnonsynTaCCaA620.33333328607-28609
N112Y112FnonsyntACtTT620.33333328607-28609
N112Y112CnonsyntActGc55128607-28609
N112Y112EnonsynTaCGaA44128607-28609
N112Y112SnonsyntACtCA420.528607-28609
N112Y112SnonsyntActCc410.2528607-28609
N112Y112SnonsyntACtCT410.2528607-28609
N112Y112PnonsynTACCCA320.66666728607-28609
N112Y112PnonsynTAcCCc310.33333328607-28609
N112Y112del2deltACt--22128607-28609
N112Y112RnonsynTACCGA22128607-28609
N112Y112AnonsynTACGCA22128607-28609
N112Y112GnonsynTACGGA22128607-28609
N112Y112del1deltaCta-210.528607-28609
N112Y112del1deltACt-N210.528607-28609
N112Y112NnonsynTacAac11128607-28609

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N112Y112YtaCtaT950950All0.000182
N112Y112YtaCtaT483483B.1.5160.945205
N112Y112YtaCtaT9090B.1.1.70.000081
N112Y112YtaCtaT2727AY.75.10.004868
N112Y112YtaCtaT2424AY.1030.000149
N112Y112YtaCtaT2424P.10.000378
N112Y112YtaCtaT2424Q.30.003481
N112Y112YtaCtaT2323AY.40.000036
N112Y112YtaCtaT2222AY.430.000097
N112Y112YtaCtaT1616B.1.617.20.00006
N112Y112delTAC---1515All0.000003
N112Y112LTAcCTc414All0.000001
N112Y112LtACtTG414All0.000001
N112Y112LTACCTG414All0.000001
N112Y112LTACCTT214All0
N112Y112YtaCtaT1414AY.440.000085
N112Y112YtaCtaT1414B.10.000128
N112Y112HTacCac1013All0.000002
N112Y112HTaCCaT313All0.000001
N112Y112LTACCTG4120.222222
N112Y112LtACtTG4120.222222
N112Y112LTAcCTc2120.111111
N112Y112LTACCTT2120.111111
N112Y112XtaCtaG511All0.000001
N112Y112XtaCtaA411All0.000001
N112Y112XtACtGA211All0
N112Y112YtaCtaT1111B.1.5960.000959
N112Y112YtaCtaT1010AY.290.000158
N112Y112XtaCtaG490.222222
N112Y112XtaCtaA390.166667
N112Y112XtACtGA290.111111
N112Y112YtaCtaT99B.520.090909
N112Y112YtaCtaT88B.1.1.5190.000318
N112Y112YtaCtaT77AY.1190.000247
N112Y112YtaCtaT77AY.250.000042
N112Y112YtaCtaT77B.1.10.000127
N112Y112YtaCtaT77B.1.4270.000353
N112Y112QTaCCaG460.222222
N112Y112QTaCCaA260.111111
N112Y112QTaCCaG46All0.000001
N112Y112FtActTc46All0.000001
N112Y112FtACtTT26All0
N112Y112QTaCCaA26All0
N112Y112YtaCtaT66B.1.2340.000792
N112Y112CtActGc55All0.000001
N112Y112YtaCtaT55AY.470.000156
N112Y112ETaCGaA440.222222
N112Y112FtACtTT240.111111
N112Y112HTaCCaT240.111111
N112Y112FtActTc240.111111
N112Y112HTacCac240.111111
N112Y112ETaCGaA44All0.000001
N112Y112StACtCA24All0
N112Y112StACtCT14All0
N112Y112StActCc14All0
N112Y112YtaCtaT44AY.1020.000106
N112Y112YtaCtaT44AY.480.00186
N112Y112YtaCtaT44B.1.1.670.018265
N112Y112YtaCtaT44B.1.2430.000278
N112Y112YtaCtaT44B.1.4290.000094
N112Y112YtaCtaT44B.1.5260.000094
N112Y112PTACCCA23All0
N112Y112PTAcCCc13All0
N112Y112YtaCtaT33AY.30.00003
N112Y112YtaCtaT33AY.390.000074
N112Y112YtaCtaT33AY.450.000365
N112Y112YtaCtaT33AY.540.000286
N112Y112YtaCtaT33AY.590.001589
N112Y112YtaCtaT33B.1.20.000026
N112Y112YtaCtaT33B.1.4390.017751
N112Y112YtaCtaT220.111111
N112Y112PTACCCA220.111111
N112Y112RTACCGA220.111111
N112Y112StACtCA220.111111
N112Y112ATACGCA220.111111
N112Y112GTACGGA220.111111
N112Y112GTACGGA22All0
N112Y112ATACGCA22All0
N112Y112del2tACt--22All0
N112Y112RTACCGA22All0
N112Y112del1tACt-N12All0
N112Y112del1taCta-12All0
N112Y112YtaCtaT22AY.1000.000092
N112Y112YtaCtaT22AY.200.000078
N112Y112YtaCtaT22AY.46.60.000144
N112Y112delTAC---22B.1.1.70.000002
N112Y112YtaCtaT22B.1.1.700.000682
N112Y112YtaCtaT22B.1.110.30.001437
N112Y112delTAC---22B.1.20.000018
N112Y112YtaCtaT22B.1.5250.000226
N112Y112HTaCCaT12B.1.617.20.000004
N112Y112HTacCac12B.1.617.20.000004
N112Y112YtaCtaT22B.1.6210.000177
N112Y112YtaCtaT22Q.80.00033
N112Y112CtActGc11A0.000387
N112Y112YtaCtaT11A.23.10.000704
N112Y112NTacAac11All0
N112Y112FtActTc11AY.1020.000027
N112Y112HTacCac11AY.1030.000006
N112Y112YtaCtaT11AY.1110.000183
N112Y112YtaCtaT11AY.1130.000142
N112Y112delTAC---11AY.1180.000063
N112Y112YtaCtaT11AY.1180.000063
N112Y112YtaCtaT11AY.1200.000037
N112Y112YtaCtaT11AY.120.20.001285
N112Y112YtaCtaT11AY.1210.000135
N112Y112YtaCtaT11AY.140.000088
N112Y112HTacCac11AY.200.000039
N112Y112delTAC---11AY.30.00001
N112Y112YtaCtaT11AY.3.10.000085
N112Y112YtaCtaT11AY.4.50.000107
N112Y112LTAcCTc11AY.430.000004
N112Y112HTacCac11AY.440.000006
N112Y112YtaCtaT11AY.46.40.000165
N112Y112HTacCac11AY.480.000465
N112Y112YtaCtaT11AY.50.000021
N112Y112YtaCtaT11AY.5.40.000277
N112Y112YtaCtaT11AY.570.000656
N112Y112YtaCtaT11AY.60.000041
N112Y112delTAC---11AY.620.000436
N112Y112delTAC---11AY.670.000464
N112Y112YtaCtaT11AY.680.000274
N112Y112YtaCtaT11AY.750.000056
N112Y112YtaCtaT11AY.840.000437
N112Y112YtaCtaT11AY.860.00083
N112Y112YtaCtaT11AY.910.00073
N112Y112YtaCtaT11AY.99.20.000092
N112Y112YtaCtaT11B0.000128
N112Y112NTacAac11B.10.000009
N112Y112LTAcCTc11B.10.000009
N112Y112XtaCtaA11B.1.10.000018
N112Y112delTAC---11B.1.10.000018
N112Y112YtaCtaT11B.1.1.1700.001247
N112Y112YtaCtaT11B.1.1.1760.000439
N112Y112YtaCtaT11B.1.1.1980.001468
N112Y112YtaCtaT11B.1.1.2140.000055
N112Y112YtaCtaT11B.1.1.2220.000204
N112Y112YtaCtaT11B.1.1.2430.004082
N112Y112YtaCtaT11B.1.1.4090.002833
N112Y112delTAC---11B.1.1.4200.001006
N112Y112HTacCac11B.1.1.5070.008696
N112Y112YtaCtaT11B.1.1.5240.020833
N112Y112StACtCT11B.1.1.70.000001
N112Y112YtaCtaT11B.1.1390.000733
N112Y112YtaCtaT11B.1.1470.000756
N112Y112YtaCtaT11B.1.1600.000031
N112Y112YtaCtaT11B.1.1770.000013
N112Y112YtaCtaT11B.1.177.180.00116
N112Y112CtActGc11B.1.177.630.002703
N112Y112YtaCtaT11B.1.177.690.001484
N112Y112YtaCtaT11B.1.1990.004132
N112Y112del2tACt--11B.1.20.000009
N112Y112YtaCtaT11B.1.2210.000071
N112Y112HTacCac11B.1.2340.000132
N112Y112PTAcCCc11B.1.2340.000132
N112Y112StActCc11B.1.2340.000132
N112Y112YtaCtaT11B.1.3510.00003
N112Y112YtaCtaT11B.1.36.360.000602
N112Y112delTAC---11B.1.4150.014286
N112Y112delTAC---11B.1.4270.00005
N112Y112YtaCtaT11B.1.438.10.000107
N112Y112YtaCtaT11B.1.4590.004082
N112Y112YtaCtaT11B.1.6120.002653
N112Y112delTAC---11B.1.617.20.000004
N112Y112YtaCtaT11B.1.6250.002353
N112Y112CtActGc11B.550.00295
N112Y112CtActGc11B.60.00091
N112Y112HTacCac11B.6.60.000889
N112Y112YtaCtaT11C.30.007634
N112Y112YtaCtaT11C.350.000774
N112Y112YtaCtaT11C.370.000116
N112Y112YtaCtaT11C.40.01
N112Y112CtActGc11D.20.000075
N112Y112del1taCta-11P.10.000016
N112Y112del2tACt--11P.10.000016
N112Y112XtaCtaG11P.10.000016
N112Y112FtActTc11P.10.000016
N112Y112delTAC---11P.10.000016
N112Y112del1tACt-N11P.1.120.000484
N112Y112YtaCtaT11P.1.150.000232
N112Y112delTAC---11P.1.170.000162