CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 11

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N11N11SnonsynaAtaGt7107090.99859228304-28306
N11N11SnonsynAAtTCt71010.0014084528304-28306
N11N11NsynaaTaaC366366128304-28306
N11N11InonsynaAtaTt2262250.99557528304-28306
N11N11InonsynaATaTC22610.0044247828304-28306
N11N11DnonsynAatGat8383128304-28306
N11N11YnonsynAatTat7272128304-28306
N11N11HnonsynAatCat6666128304-28306
N11N11deldelAAT---5858128304-28306
N11N11TnonsynaAtaCt52420.80769228304-28306
N11N11TnonsynaATaCC5290.17307728304-28306
N11N11TnonsynaATaCG5210.019230828304-28306
N11N11KnonsynaaTaaA44250.56818228304-28306
N11N11KnonsynaaTaaG44190.43181828304-28306
N11N11del1delAat-at22128304-28306
N11N11PnonsynAAtCCt210.528304-28306
N11N11PnonsynAATCCC210.528304-28306
N11N11del2delaATa--11128304-28306

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N11N11SaAtaGt709710All0.000136
N11N11SAAtTCt1710All0
N11N11NaaTaaC366366All0.00007
N11N11IaAtaTt225226All0.000043
N11N11IaATaTC1226All0
N11N11SaAtaGt154154B.1.617.20.00058
N11N11SaAtaGt110110B.1.1.70.000098
N11N11IaAtaTt8484B.1.4780.988235
N11N11DAatGat8383All0.000016
N11N11YAatTat7272All0.000014
N11N11HAatCat6666All0.000013
N11N11NaaTaaC6666B.1.1.70.000059
N11N11delAAT---5858All0.000011
N11N11IaAtaTt5555AY.40.000086
N11N11TaAtaCt4252All0.000008
N11N11TaATaCC952All0.000002
N11N11TaATaCG152All0
N11N11SaAtaGt5050B.1.1.250.028425
N11N11KaaTaaA2544All0.000005
N11N11KaaTaaG1944All0.000004
N11N11SaAtaGt4343B.1.10.00078
N11N11SaAtaGt4343B.1.3620.066256
N11N11DAatGat3838B.1.1.70.000034
N11N11SaAtaGt3636B.1.1.3591
N11N11NaaTaaC3636B.1.617.20.000136
N11N11YAatTat3434AY.460.003539
N11N11SaAtaGt3232AY.1190.00113
N11N11NaaTaaC3131AY.40.000048
N11N11SaAtaGt2727AY.430.00012
N11N11NaaTaaC2626B.10.000238
N11N11NaaTaaC2121AY.440.000128
N11N11HAatCat2020AY.4.20.000434
N11N11TaAtaCt1120B.1.1.70.00001
N11N11TaATaCC920B.1.1.70.000008
N11N11SaAtaGt1818B.10.000165
N11N11SaAtaGt1616AY.40.000025
N11N11delAAT---1616AY.920.004596
N11N11NaaTaaC1515AY.1060.005023
N11N11SaAtaGt1515AY.980.001185
N11N11SaAtaGt1213AY.440.000073
N11N11SAAtTCt113AY.440.000006
N11N11NaaTaaC1212AY.1030.000075
N11N11HAatCat1212AY.40.000019
N11N11SaAtaGt1111AY.750.000616
N11N11HAatCat1111B.1.160.80.014175
N11N11NaaTaaC1111B.1.20.000097
N11N11IaAtaTt910B.1.617.20.000034
N11N11IaATaTC110B.1.617.20.000004
N11N11delAAT---99AY.99.20.000829
N11N11SaAtaGt99B.1.1.10.00294
N11N11DAatGat99B.1.177.210.000688
N11N11KaaTaaG59B.1.617.20.000019
N11N11KaaTaaA49B.1.617.20.000015
N11N11SaAtaGt88AY.1030.00005
N11N11NaaTaaC88AY.120.10.002568
N11N11HAatCat88AY.430.000035
N11N11NaaTaaC88B.1.1770.000105
N11N11SaAtaGt88B.1.5260.000188
N11N11NaaTaaC77AY.430.000031
N11N11NaaTaaC77AY.50.000145
N11N11NaaTaaC77B.1.10.000127
N11N11IaAtaTt77B.1.20.000062
N11N11KaaTaaA77B.1.6380.368421
N11N11IaAtaTt66AY.1030.000037
N11N11YAatTat66AY.1170.000507
N11N11IaAtaTt66AY.1180.000376
N11N11NaaTaaC66AY.250.000036
N11N11SaAtaGt66AY.250.000036
N11N11SaAtaGt66AY.390.000148
N11N11IaAtaTt66AY.99.20.000553
N11N11IaAtaTt66B.10.000055
N11N11IaAtaTt66B.1.1.70.000005
N11N11SaAtaGt66B.1.1770.000079
N11N11NaaTaaC55AY.1190.000177
N11N11delAAT---55AY.430.000022
N11N11TaAtaCt55AY.440.00003
N11N11KaaTaaG55AY.750.00028
N11N11NaaTaaC55AY.980.000395
N11N11SaAtaGt55B.1.1.2220.00102
N11N11SaAtaGt55B.1.2210.000355
N11N11IaAtaTt55B.1.3560.008636
N11N11SaAtaGt55B.1.6270.010101
N11N11SaAtaGt55B.1.6370.000365
N11N11TaAtaCt55B.40.011038
N11N11SaAtaGt44AY.300.001583
N11N11NaaTaaC44AY.330.000267
N11N11IaAtaTt44AY.4.20.000087
N11N11DAatGat44B.1.10.000073
N11N11YAatTat44B.1.1.1410.008048
N11N11delAAT---44B.1.1.70.000004
N11N11SaAtaGt44B.1.177.860.000734
N11N11IaAtaTt44B.1.2400.000862
N11N11NaaTaaC44B.1.2430.000278
N11N11NaaTaaC44B.1.3510.000119
N11N11NaaTaaC44B.1.36.290.002069
N11N11KaaTaaG44B.1.4290.000094
N11N11YAatTat44C.230.023256
N11N11NaaTaaC44C.370.000464
N11N11SaAtaGt33AY.1020.00008
N11N11IaAtaTt33AY.1020.00008
N11N11NaaTaaC33AY.1020.00008
N11N11NaaTaaC33AY.200.000117
N11N11YAatTat33AY.250.000018
N11N11NaaTaaC33AY.260.000085
N11N11IaAtaTt33AY.30.00003
N11N11DAatGat33AY.40.000005
N11N11delAAT---33AY.40.000005
N11N11DAatGat33AY.430.000013
N11N11HAatCat33AY.440.000018
N11N11SaAtaGt33AY.5.40.00083
N11N11SaAtaGt33AY.530.000863
N11N11SaAtaGt33AY.550.002752
N11N11TaAtaCt33AY.60.000123
N11N11NaaTaaC33AY.75.10.000541
N11N11SaAtaGt33AY.9.20.00011
N11N11SaAtaGt33B.1.1.700.001023
N11N11SaAtaGt33B.1.177.200.004552
N11N11SaAtaGt33B.1.2060.002447
N11N11SaAtaGt33B.1.36.290.001552
N11N11TaAtaCt33B.1.3610.003866
N11N11NaaTaaC33B.1.3670.002377
N11N11DAatGat33B.1.4290.000071
N11N11HAatCat33B.1.617.20.000011
N11N11del1Aat-at22All0
N11N11PAATCCC12All0
N11N11PAAtCCt12All0
N11N11TaAtaCt22AY.1020.000053
N11N11SaAtaGt22AY.1100.000225
N11N11NaaTaaC22AY.120.000632
N11N11NaaTaaC22AY.1210.000271
N11N11YAatTat22AY.160.000759
N11N11IaAtaTt22AY.250.000012
N11N11SaAtaGt22AY.260.000057
N11N11DAatGat22AY.260.000057
N11N11YAatTat22AY.290.000032
N11N11YAatTat22AY.40.000003
N11N11NaaTaaC22AY.4.50.000215
N11N11delAAT---22AY.460.000208
N11N11NaaTaaC22AY.560.00321
N11N11NaaTaaC22AY.740.000231
N11N11NaaTaaC22AY.90.000135
N11N11SaAtaGt22AY.99.20.000184
N11N11KaaTaaA22B.10.000018
N11N11NaaTaaC22B.1.1.2160.001781
N11N11SaAtaGt22B.1.1.3110.000716
N11N11HAatCat22B.1.1.70.000002
N11N11KaaTaaA22B.1.1600.000062
N11N11YAatTat22B.1.177.160.001329
N11N11NaaTaaC22B.1.177.160.001329
N11N11SaAtaGt22B.1.20.000018
N11N11DAatGat22B.1.20.000018
N11N11NaaTaaC22B.1.2210.000142
N11N11YAatTat22B.1.2580.000133
N11N11SaAtaGt22B.1.36.190.018519
N11N11SaAtaGt22B.1.4290.000047
N11N11HAatCat22B.1.4290.000047
N11N11IaAtaTt22B.1.4290.000047
N11N11IaAtaTt22B.1.5250.000226
N11N11NaaTaaC22B.1.5260.000047
N11N11IaAtaTt22B.1.5260.000047
N11N11NaaTaaC22B.1.5640.000852
N11N11YAatTat22B.1.617.20.000008
N11N11delAAT---22B.1.617.20.000008
N11N11SaAtaGt22B.1.6210.000177
N11N11DAatGat22B.1.6370.000146
N11N11NaaTaaC22B.1.6370.000146
N11N11SaAtaGt22B.550.0059
N11N11TaAtaCt22C.370.000232
N11N11DAatGat22C.370.000232
N11N11NaaTaaC22D.20.00015
N11N11NaaTaaC22P.10.000032
N11N11SaAtaGt22R.10.00018
N11N11IaAtaTt11A.20.000662
N11N11HAatCat11A.2.50.000499
N11N11del2aATa--11All0
N11N11SaAtaGt11AY.10.000396
N11N11HAatCat11AY.10.000396
N11N11delAAT---11AY.1000.000046
N11N11delAAT---11AY.1010.00049
N11N11delAAT---11AY.1030.000006
N11N11KaaTaaG11AY.1030.000006
N11N11KaaTaaG11AY.1050.000643
N11N11NaaTaaC11AY.1100.000113
N11N11DAatGat11AY.1110.000183
N11N11HAatCat11AY.1130.000142
N11N11YAatTat11AY.1200.000037
N11N11delAAT---11AY.1200.000037
N11N11PAATCCC11AY.120.10.000321
N11N11IaAtaTt11AY.1210.000135
N11N11SaAtaGt11AY.200.000039
N11N11DAatGat11AY.230.00007
N11N11TaAtaCt11AY.230.00007
N11N11delAAT---11AY.230.00007
N11N11SaAtaGt11AY.240.000431
N11N11del2aATa--11AY.250.000006
N11N11TaAtaCt11AY.250.000006
N11N11DAatGat11AY.250.000006
N11N11SaAtaGt11AY.290.000016
N11N11NaaTaaC11AY.30.00001
N11N11SaAtaGt11AY.320.000532
N11N11delAAT---11AY.330.000067
N11N11NaaTaaC11AY.370.000316
N11N11IaAtaTt11AY.390.000025
N11N11DAatGat11AY.4.20.000022
N11N11TaAtaCt11AY.4.20.000022
N11N11SaAtaGt11AY.4.20.000022
N11N11delAAT---11AY.4.40.000409
N11N11NaaTaaC11AY.400.000964
N11N11KaaTaaA11AY.420.00004
N11N11TaAtaCt11AY.430.000004
N11N11delAAT---11AY.440.000006
N11N11IaAtaTt11AY.440.000006
N11N11DAatGat11AY.440.000006
N11N11SaAtaGt11AY.460.000104
N11N11delAAT---11AY.46.30.000934
N11N11SaAtaGt11AY.46.50.000198
N11N11delAAT---11AY.46.60.000072
N11N11YAatTat11AY.470.000031
N11N11DAatGat11AY.50.000021
N11N11KaaTaaG11AY.50.000021
N11N11SaAtaGt11AY.50.000021
N11N11delAAT---11AY.5.30.000337
N11N11NaaTaaC11AY.60.000041
N11N11SaAtaGt11AY.60.000041
N11N11NaaTaaC11AY.610.000105
N11N11NaaTaaC11AY.680.000274
N11N11NaaTaaC11AY.750.000056
N11N11KaaTaaG11AY.820.001357
N11N11NaaTaaC11AY.9.20.000037
N11N11NaaTaaC11AY.920.000287
N11N11NaaTaaC11AY.930.000273
N11N11TaAtaCt11AY.980.000079
N11N11NaaTaaC11AY.98.10.000048
N11N11DAatGat11AY.98.10.000048
N11N11HAatCat11AY.99.20.000092
N11N11DAatGat11AZ.10.000867
N11N11DAatGat11B.10.000009
N11N11TaAtaCt11B.10.000009
N11N11del1Aat-at11B.10.000009
N11N11YAatTat11B.10.000009
N11N11delAAT---11B.1.10.000018
N11N11SaAtaGt11B.1.1.1740.003378
N11N11SaAtaGt11B.1.1.2200.001859
N11N11IaAtaTt11B.1.1.2220.000204
N11N11SaAtaGt11B.1.1.3060.000438
N11N11TaAtaCt11B.1.1.3060.000438
N11N11NaaTaaC11B.1.1.3260.001761
N11N11DAatGat11B.1.1.3260.001761
N11N11SaAtaGt11B.1.1.3260.001761
N11N11SaAtaGt11B.1.1.4030.025641
N11N11SaAtaGt11B.1.1.4090.002833
N11N11SaAtaGt11B.1.1.500.000679
N11N11NaaTaaC11B.1.1.5190.00004
N11N11KaaTaaA11B.1.1.5190.00004
N11N11KaaTaaA11B.1.1.5250.005464
N11N11NaaTaaC11B.1.1.5260.003546
N11N11NaaTaaC11B.1.1.630.000386
N11N11KaaTaaG11B.1.1280.000635
N11N11NaaTaaC11B.1.160.80.001289
N11N11KaaTaaA11B.1.1770.000013
N11N11delAAT---11B.1.177.160.000664
N11N11NaaTaaC11B.1.177.210.000076
N11N11YAatTat11B.1.177.40.000211
N11N11KaaTaaA11B.1.177.540.000606
N11N11delAAT---11B.1.177.560.000668
N11N11NaaTaaC11B.1.177.560.000668
N11N11SaAtaGt11B.1.177.560.000668
N11N11PAAtCCt11B.1.177.630.002703
N11N11IaAtaTt11B.1.177.830.001481
N11N11delAAT---11B.1.20.000009
N11N11KaaTaaA11B.1.20.000009
N11N11TaAtaCt11B.1.20.000009
N11N11NaaTaaC11B.1.2060.000816
N11N11YAatTat11B.1.2100.002132
N11N11del1Aat-at11B.1.214.20.0006
N11N11KaaTaaA11B.1.2210.000071
N11N11TaAtaCt11B.1.2210.000071
N11N11delAAT---11B.1.221.10.002907
N11N11SaAtaGt11B.1.2350.002519
N11N11SaAtaGt11B.1.2580.000067
N11N11DAatGat11B.1.2580.000067
N11N11DAatGat11B.1.3510.00003
N11N11IaAtaTt11B.1.3510.00003
N11N11SaAtaGt11B.1.360.000146
N11N11IaAtaTt11B.1.36.380.001642
N11N11TaAtaCt11B.1.3620.001541
N11N11KaaTaaA11B.1.4000.000429
N11N11YAatTat11B.1.416.10.001563
N11N11IaAtaTt11B.1.4280.00102
N11N11NaaTaaC11B.1.4290.000024
N11N11TaAtaCt11B.1.4290.000024
N11N11YAatTat11B.1.4290.000024
N11N11KaaTaaA11B.1.438.10.000107
N11N11HAatCat11B.1.4410.009615
N11N11IaAtaTt11B.1.4620.007246
N11N11NaaTaaC11B.1.4620.007246
N11N11NaaTaaC11B.1.466.20.000391
N11N11NaaTaaC11B.1.4990.00105
N11N11DAatGat11B.1.5370.02
N11N11YAatTat11B.1.5950.000261
N11N11NaaTaaC11B.1.5960.000087
N11N11SaAtaGt11B.1.5960.000087
N11N11NaaTaaC11B.1.6120.002653
N11N11NaaTaaC11B.1.617.10.000129
N11N11NaaTaaC11B.1.6360.006711
N11N11KaaTaaA11B.1.6370.000073
N11N11IaAtaTt11B.1.930.000934
N11N11NaaTaaC11B.390.002331
N11N11NaaTaaC11C.36.30.000567
N11N11NaaTaaC11N.50.001767
N11N11SaAtaGt11P.10.000016
N11N11YAatTat11P.10.000016
N11N11DAatGat11P.10.000016
N11N11TaATaCG11P.1.140.000048
N11N11IaAtaTt11P.1.150.000232
N11N11IaAtaTt11P.1.60.001946
N11N11DAatGat11P.1.70.000319
N11N11delAAT---11P.1.70.000319
N11N11NaaTaaC11R.10.00009
N11N11SaAtaGt11W.40.001351