CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 109

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N109Y109YsyntaTtaC30843084128598-28600
N109Y109FnonsyntAttTt84800.95238128598-28600
N109Y109FnonsyntATtTC8440.04761928598-28600
N109Y109deldelTAT---1717128598-28600
N109Y109HnonsynTatCat1212128598-28600
N109Y109CnonsyntAttGt750.71428628598-28600
N109Y109CnonsyntATtGC720.28571428598-28600
N109Y109XnonsyntaTtaA430.7528598-28600
N109Y109XnonsyntaTtaG410.2528598-28600
N109Y109DnonsynTatGat22128598-28600
N109Y109NnonsynTatAat11128598-28600
N109Y109LnonsyntATtTA11128598-28600
N109Y109InonsynTATATC11128598-28600
N109Y109SnonsyntAttCt11128598-28600
N109Y109del1deltaTta-11128598-28600
N109Y109del2delTAt--t11128598-28600

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N109Y109YtaTtaC30843084All0.00059
N109Y109YtaTtaC15581558B.1.619.10.999359
N109Y109YtaTtaC576576B.1.2320.309511
N109Y109YtaTtaC326326AY.50.006732
N109Y109YtaTtaC202202B.1.5610.080191
N109Y109FtAttTt8084All0.000015
N109Y109FtATtTC484All0.000001
N109Y109YtaTtaC5858B.10.000531
N109Y109YtaTtaC4545B.1.1.70.00004
N109Y109FtAttTt4343B.1.1.70.000038
N109Y109YtaTtaC3939B.1.617.20.000147
N109Y109YtaTtaC3232AY.430.000142
N109Y109YtaTtaC3131AY.40.000048
N109Y109YtaTtaC2626B.1.20.000229
N109Y109delTAT---1717All0.000003
N109Y109YtaTtaC1616AY.10.006332
N109Y109HTatCat1212All0.000002
N109Y109YtaTtaC1111AY.440.000067
N109Y109FtAttTt1111B.1.20.000097
N109Y109YtaTtaC1010AY.390.000247
N109Y109YtaTtaC88AY.230.000558
N109Y109YtaTtaC88AY.790.009685
N109Y109CtAttGt57All0.000001
N109Y109CtATtGC27All0
N109Y109YtaTtaC77AY.1030.000043
N109Y109YtaTtaC77B.1.6190.006098
N109Y109FtAttTt77Q.30.001015
N109Y109YtaTtaC66AY.250.000036
N109Y109YtaTtaC66AY.46.60.000433
N109Y109YtaTtaC66B.1.3510.000178
N109Y109YtaTtaC66B.1.4290.000141
N109Y109FtAttTt350.166667
N109Y109FtATtTC250.111111
N109Y109YtaTtaC55AY.820.006784
N109Y109YtaTtaC55B.1.2810.108696
N109Y109YtaTtaC440.222222
N109Y109CtATtGC240.111111
N109Y109CtAttGt240.111111
N109Y109XtaTtaA34All0.000001
N109Y109XtaTtaG14All0
N109Y109YtaTtaC44AY.30.00004
N109Y109YtaTtaC33AY.1020.00008
N109Y109FtAttTt33AY.40.000005
N109Y109YtaTtaC33AY.4.40.001227
N109Y109YtaTtaC33P.10.000047
N109Y109delTAT---220.111111
N109Y109DTatGat22All0
N109Y109FtAttTt22AY.1030.000012
N109Y109YtaTtaC22AY.20.000712
N109Y109HTatCat22AY.40.000003
N109Y109YtaTtaC22AY.610.00021
N109Y109YtaTtaC22AY.730.001331
N109Y109YtaTtaC22AY.810.003984
N109Y109FtAttTt22AY.820.002714
N109Y109YtaTtaC22AY.9.10.000167
N109Y109YtaTtaC22AY.9.20.000073
N109Y109YtaTtaC22AY.980.000158
N109Y109YtaTtaC22AY.99.20.000184
N109Y109YtaTtaC22B.1.10.000036
N109Y109YtaTtaC22B.1.1.1350.00939
N109Y109YtaTtaC22B.1.1.3170.000823
N109Y109YtaTtaC22B.1.1.3970.004505
N109Y109delTAT---22B.1.1.70.000002
N109Y109YtaTtaC22B.1.1470.001512
N109Y109CtAttGt22B.1.1770.000026
N109Y109YtaTtaC22B.1.220.002635
N109Y109YtaTtaC22B.1.36.160.002849
N109Y109FtAttTt22B.1.4290.000047
N109Y109YtaTtaC22B.1.466.20.000782
N109Y109delTAT---22B.1.617.20.000008
N109Y109YtaTtaC22B.1.6370.000146
N109Y109YtaTtaC22C.360.001821
N109Y109YtaTtaC22P.1.140.000096
N109Y109XtaTtaA110.055556
N109Y109LtATtTA110.055556
N109Y109YtaTtaC11A.2.50.000499
N109Y109LtATtTA11All0
N109Y109ITATATC11All0
N109Y109StAttCt11All0
N109Y109NTatAat11All0
N109Y109del1taTta-11All0
N109Y109del2TAt--t11All0
N109Y109FtAttTt11AY.1000.000046
N109Y109del1taTta-11AY.1000.000046
N109Y109delTAT---11AY.1030.000006
N109Y109HTatCat11AY.1100.000113
N109Y109YtaTtaC11AY.1170.000085
N109Y109CtAttGt11AY.1170.000085
N109Y109delTAT---11AY.1180.000063
N109Y109YtaTtaC11AY.1190.000035
N109Y109YtaTtaC11AY.1210.000135
N109Y109YtaTtaC11AY.140.000088
N109Y109HTatCat11AY.250.000006
N109Y109YtaTtaC11AY.260.000028
N109Y109YtaTtaC11AY.290.000016
N109Y109delTAT---11AY.30.00001
N109Y109HTatCat11AY.30.00001
N109Y109HTatCat11AY.330.000067
N109Y109YtaTtaC11AY.370.000316
N109Y109HTatCat11AY.390.000025
N109Y109DTatGat11AY.430.000004
N109Y109delTAT---11AY.430.000004
N109Y109FtAttTt11AY.430.000004
N109Y109FtATtTC11AY.440.000006
N109Y109YtaTtaC11AY.5.30.000337
N109Y109HTatCat11AY.5.30.000337
N109Y109delTAT---11AY.620.000436
N109Y109delTAT---11AY.670.000464
N109Y109YtaTtaC11AY.720.001361
N109Y109HTatCat11AY.790.001211
N109Y109FtAttTt11AY.9.20.000037
N109Y109YtaTtaC11AY.99.10.001553
N109Y109YtaTtaC11AZ.20.000821
N109Y109HTatCat11B0.000128
N109Y109del2TAt--t11B.10.000009
N109Y109StAttCt11B.10.000009
N109Y109NTatAat11B.10.000009
N109Y109delTAT---11B.1.10.000018
N109Y109ITATATC11B.1.10.000018
N109Y109delTAT---11B.1.1.2160.00089
N109Y109YtaTtaC11B.1.1.2340.012048
N109Y109YtaTtaC11B.1.1.250.000569
N109Y109YtaTtaC11B.1.1.3060.000438
N109Y109YtaTtaC11B.1.1.330.000421
N109Y109XtaTtaA11B.1.1.70.000001
N109Y109HTatCat11B.1.1.70.000001
N109Y109YtaTtaC11B.1.1770.000013
N109Y109YtaTtaC11B.1.177.120.000152
N109Y109FtATtTC11B.1.177.630.002703
N109Y109XtaTtaA11B.1.177.690.001484
N109Y109YtaTtaC11B.1.177.730.000566
N109Y109HTatCat11B.1.20.000009
N109Y109delTAT---11B.1.20.000009
N109Y109FtAttTt11B.1.2340.000132
N109Y109YtaTtaC11B.1.2400.000216
N109Y109YtaTtaC11B.1.2410.000812
N109Y109YtaTtaC11B.1.360.000146
N109Y109YtaTtaC11B.1.3690.000285
N109Y109FtAttTt11B.1.3690.000285
N109Y109YtaTtaC11B.1.3990.001934
N109Y109delTAT---11B.1.4150.014286
N109Y109delTAT---11B.1.4270.00005
N109Y109YtaTtaC11B.1.4590.004082
N109Y109YtaTtaC11B.1.4650.003802
N109Y109YtaTtaC11B.1.5670.003333
N109Y109XtaTtaG11B.1.617.20.000004
N109Y109FtAttTt11B.1.617.20.000004
N109Y109YtaTtaC11B.1.6200.000946
N109Y109YtaTtaC11B.1.6210.000089
N109Y109YtaTtaC11C.350.000774
N109Y109YtaTtaC11D.20.000075
N109Y109FtAttTt11P.10.000016
N109Y109DTatGat11P.1.10.000318
N109Y109YtaTtaC11P.1.150.000232
N109Y109YtaTtaC11P.20.000187
N109Y109YtaTtaC11Q.10.000126
N109Y109YtaTtaC11R.10.00009