CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = N : CodonNum = 10

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
N10R10QnonsyncGacAa610610128301-28303
N10R10RsynCgaAga5974220.70686828301-28303
N10R10RsyncgAcgG597850.14237928301-28303
N10R10RsyncgAcgT597510.085427128301-28303
N10R10RsyncgAcgC597390.065326628301-28303
N10R10PnonsyncGacCa5725710.99825228301-28303
N10R10PnonsyncGAcCC57210.0017482528301-28303
N10R10LnonsyncGacTa1811800.99447528301-28303
N10R10LnonsyncGAcTG18110.0055248628301-28303
N10R10GnonsynCgaGga9191128301-28303
N10R10deldelCGA---5757128301-28303
N10R10XnonsynCgaTga1717128301-28303
N10R10del1delcgAcg-540.828301-28303
N10R10del1delcGac-a510.228301-28303
N10R10TnonsynCGAACG210.528301-28303
N10R10TnonsynCGaACa210.528301-28303
N10R10KnonsynCGaAAa11128301-28303
N10R10WnonsynCgATgG11128301-28303

Details of the mutation no within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
N10R10QcGacAa610610All0.000117
N10R10RCgaAga422597All0.000081
N10R10RcgAcgG85597All0.000016
N10R10RcgAcgT51597All0.00001
N10R10RcgAcgC39597All0.000007
N10R10PcGacCa571572All0.000109
N10R10PcGAcCC1572All0
N10R10PcGacCa234234B.1.1.70.000209
N10R10RCgaAga206207B.1.1770.002713
N10R10RcgAcgG1207B.1.1770.000013
N10R10LcGacTa180181All0.000034
N10R10LcGAcTG1181All0
N10R10QcGacAa150150B.1.5260.003526
N10R10QcGacAa127127B.1.415.10.962121
N10R10GCgaGga9191All0.000017
N10R10QcGacAa7373B.1.1.70.000065
N10R10GCgaGga7272B.1.1.70.000064
N10R10RCgaAga5971B.1.617.20.000222
N10R10RcgAcgG771B.1.617.20.000026
N10R10RcgAcgT371B.1.617.20.000011
N10R10RcgAcgC271B.1.617.20.000008
N10R10delCGA---5757All0.000011
N10R10PcGacCa5555AY.40.000086
N10R10RCgaAga5051AY.430.000222
N10R10RcgAcgT151AY.430.000004
N10R10LcGacTa4949B.1.1.70.000044
N10R10LcGacTa4444AY.40.000068
N10R10RCgaAga2840AY.40.000044
N10R10RcgAcgG740AY.40.000011
N10R10RcgAcgT340AY.40.000005
N10R10RcgAcgC240AY.40.000003
N10R10PcGacCa3030B.1.617.20.000113
N10R10QcGacAa2626AY.4.20.000564
N10R10RCgaAga1226B.1.1.70.000011
N10R10RcgAcgG626B.1.1.70.000005
N10R10RcgAcgC526B.1.1.70.000004
N10R10RcgAcgT326B.1.1.70.000003
N10R10QcGacAa2222AY.40.000034
N10R10QcGacAa2121B.1.617.20.000079
N10R10RcgAcgT1819B.1.3510.000535
N10R10RCgaAga119B.1.3510.00003
N10R10XCgaTga1717All0.000003
N10R10QcGacAa1717AY.430.000075
N10R10PcGacCa1717AY.440.000103
N10R10PcGacCa1717B.1.6330.708333
N10R10delCGA---1616AY.920.004596
N10R10PcGacCa1616B.10.000147
N10R10PcGacCa1414AY.1000.000644
N10R10QcGacAa1414AY.390.000346
N10R10QcGacAa1212AY.440.000073
N10R10RCgaAga612AY.440.000037
N10R10RcgAcgT312AY.440.000018
N10R10RcgAcgG212AY.440.000012
N10R10RcgAcgC112AY.440.000006
N10R10PcGacCa1111AY.1020.000292
N10R10RcgAcgG711B.1.4290.000165
N10R10RcgAcgC411B.1.4290.000094
N10R10PcGacCa1010AY.430.000044
N10R10RcgAcgT710C.370.000812
N10R10RcgAcgG210C.370.000232
N10R10RCgaAga110C.370.000116
N10R10RcgAcgG89AY.4.20.000174
N10R10RcgAcgC19AY.4.20.000022
N10R10delCGA---99AY.99.20.000829
N10R10RcgAcgG69B.1.20.000053
N10R10RCgaAga29B.1.20.000018
N10R10RcgAcgT19B.1.20.000009
N10R10LcGacTa99B.1.617.20.000034
N10R10RcgAcgG99C.360.008197
N10R10RCgaAga88AY.1030.00005
N10R10RCgaAga68AY.250.000036
N10R10RcgAcgC18AY.250.000006
N10R10RcgAcgT18AY.250.000006
N10R10PcGacCa88AY.260.000226
N10R10RCgaAga88AY.30.00008
N10R10QcGacAa88B.1.1770.000105
N10R10PcGacCa88B.1.4270.000404
N10R10QcGacAa77AY.1000.000322
N10R10PcGacCa77AY.250.000042
N10R10RcgAcgG77AY.750.000392
N10R10QcGacAa77B.1.1600.000218
N10R10PcGacCa77P.10.00011
N10R10RcgAcgG37P.10.000047
N10R10RCgaAga37P.10.000047
N10R10RcgAcgC17P.10.000016
N10R10QcGacAa66AY.1030.000037
N10R10PcGacCa66AY.140.000528
N10R10QcGacAa66AY.250.000036
N10R10QcGacAa66AY.30.00006
N10R10PcGacCa66AY.50.000124
N10R10LcGacTa66B.10.000055
N10R10QcGacAa66B.1.1.2140.000333
N10R10PcGacCa66B.1.4290.000141
N10R10QcGacAa66B.1.438.10.000644
N10R10del1cgAcg-45All0.000001
N10R10del1cGac-a15All0
N10R10LcGacTa55AY.1030.000031
N10R10PcGacCa55AY.30.00005
N10R10delCGA---55AY.430.000022
N10R10RcgAcgC55AY.610.000524
N10R10PcGacCa55AY.7.10.000564
N10R10PcGacCa55AY.99.20.000461
N10R10PcGacCa55B.1.1770.000066
N10R10PcGacCa55B.1.177.210.000382
N10R10QcGacAa55B.1.177.620.005959
N10R10LcGacTa55B.1.4290.000118
N10R10RCgaAga44AY.1020.000106
N10R10PcGacCa44AY.200.000155
N10R10RcgAcgT14AY.200.000039
N10R10RcgAcgC14AY.200.000039
N10R10RcgAcgG14AY.200.000039
N10R10RCgaAga14AY.200.000039
N10R10RcgAcgG44AY.230.000279
N10R10PcGacCa44AY.270.000259
N10R10LcGacTa44AY.440.000024
N10R10QcGacAa44AY.50.000083
N10R10PcGacCa44AY.570.002625
N10R10RcgAcgG24B.10.000018
N10R10RcgAcgT14B.10.000009
N10R10RCgaAga14B.10.000009
N10R10delCGA---44B.1.1.70.000004
N10R10PcGacCa44B.1.20.000035
N10R10QcGacAa44B.1.20.000035
N10R10RCgaAga44B.1.258.20.018018
N10R10QcGacAa44B.1.4290.000094
N10R10PcGacCa44B.1.617.10.000516
N10R10PcGacCa33AY.1030.000019
N10R10PcGacCa33AY.1190.000106
N10R10LcGacTa33AY.250.000018
N10R10QcGacAa33AY.270.000194
N10R10PcGacCa33AY.390.000074
N10R10QcGacAa33AY.420.000121
N10R10LcGacTa33AY.420.000121
N10R10LcGacTa33AY.430.000013
N10R10GCgaGga33AY.440.000018
N10R10QcGacAa33AY.460.000312
N10R10PcGacCa33AY.770.003382
N10R10XCgaTga33B.10.000027
N10R10QcGacAa33B.1.1.4320.003797
N10R10LcGacTa33B.1.20.000026
N10R10RcgAcgG33B.1.2430.000209
N10R10RcgAcgC33B.1.3490.002144
N10R10QcGacAa33B.1.5820.001472
N10R10PcGacCa33B.1.6090.001438
N10R10PcGacCa33B.1.6230.001609
N10R10PcGacCa33C.350.002322
N10R10GCgaGga33C.370.000348
N10R10QcGacAa33P.10.000047
N10R10QcGacAa33R.10.00027
N10R10LcGacTa22A0.000774
N10R10TCGaACa12All0
N10R10TCGAACG12All0
N10R10QcGacAa22AW.10.006098
N10R10RcgAcgC22AY.116.10.000623
N10R10RCgaAga22AY.1180.000125
N10R10QcGacAa22AY.160.000759
N10R10RCgaAga12AY.160.00038
N10R10RcgAcgC12AY.160.00038
N10R10QcGacAa22AY.230.000139
N10R10RcgAcgG12AY.260.000028
N10R10RCgaAga12AY.260.000028
N10R10PcGacCa22AY.290.000032
N10R10RCgaAga22AY.320.001065
N10R10RCgaAga12AY.390.000025
N10R10RcgAcgC12AY.390.000025
N10R10delCGA---22AY.40.000003
N10R10PcGacCa22AY.4.20.000043
N10R10PcGacCa22AY.410.000588
N10R10RCgaAga22AY.450.000243
N10R10PcGacCa22AY.460.000208
N10R10delCGA---22AY.460.000208
N10R10RCgaAga22AY.560.00321
N10R10PcGacCa22AY.60.000082
N10R10QcGacAa22AY.690.000373
N10R10PcGacCa22AY.750.000112
N10R10QcGacAa22AY.75.10.000361
N10R10QcGacAa22B.10.000018
N10R10del1cgAcg-12B.10.000009
N10R10del1cGac-a12B.10.000009
N10R10QcGacAa22B.1.10.000036
N10R10PcGacCa22B.1.10.000036
N10R10PcGacCa22B.1.1.2050.007435
N10R10LcGacTa22B.1.1.4650.03125
N10R10LcGacTa22B.1.1600.000062
N10R10LcGacTa22B.1.177.810.000379
N10R10GCgaGga22B.1.20.000018
N10R10QcGacAa22B.1.258.170.000208
N10R10PcGacCa22B.1.3510.000059
N10R10QcGacAa22B.1.3510.000059
N10R10QcGacAa22B.1.3670.001585
N10R10PcGacCa22B.1.4220.001625
N10R10QcGacAa22B.1.4270.000101
N10R10PcGacCa22B.1.5890.015152
N10R10LcGacTa22B.1.5960.000174
N10R10delCGA---22B.1.617.20.000008
N10R10GCgaGga22B.1.617.20.000008
N10R10RcgAcgG22B.1.6370.000146
N10R10LcGacTa22B.1.6370.000146
N10R10QcGacAa22B.1.6370.000146
N10R10LcGacTa22C.360.001821
N10R10QcGacAa22D.20.00015
N10R10TCGAACG12P.10.000016
N10R10TCGaACa12P.10.000016
N10R10RcgAcgG12P.1.120.000484
N10R10RcgAcgC12P.1.120.000484
N10R10PcGacCa22P.1.140.000096
N10R10PcGacCa22Q.80.00033
N10R10RCgaAga11A0.000387
N10R10PcGacCa11A.2.50.000499
N10R10KCGaAAa11All0
N10R10WCgATgG11All0
N10R10PcGacCa11AU.10.001266
N10R10RcgAcgT11AY.1000.000046
N10R10delCGA---11AY.1000.000046
N10R10PcGacCa11AY.1010.00049
N10R10delCGA---11AY.1010.00049
N10R10XCgaTga11AY.1020.000027
N10R10GCgaGga11AY.1020.000027
N10R10LcGacTa11AY.1020.000027
N10R10delCGA---11AY.1030.000006
N10R10RcgAcgC11AY.1090.00074
N10R10PcGacCa11AY.1100.000113
N10R10RcgAcgT11AY.1110.000183
N10R10RCgaAga11AY.1130.000142
N10R10RcgAcgG11AY.1170.000085
N10R10PcGacCa11AY.1170.000085
N10R10GCgaGga11AY.1190.000035
N10R10QcGacAa11AY.1190.000035
N10R10RcgAcgC11AY.120.000316
N10R10delCGA---11AY.1200.000037
N10R10PcGacCa11AY.1200.000037
N10R10LcGAcTG11AY.120.10.000321
N10R10QcGacAa11AY.120.10.000321
N10R10PcGacCa11AY.1210.000135
N10R10LcGacTa11AY.140.000088
N10R10QcGacAa11AY.16.10.00047
N10R10RcgAcgT11AY.20.000356
N10R10QcGacAa11AY.200.000039
N10R10GCgaGga11AY.200.000039
N10R10delCGA---11AY.230.00007
N10R10PcGAcCC11AY.230.00007
N10R10PcGacCa11AY.240.000431
N10R10GCgaGga11AY.250.000006
N10R10XCgaTga11AY.250.000006
N10R10RcgAcgT11AY.270.000065
N10R10PcGacCa11AY.29.10.000221
N10R10LcGacTa11AY.30.00001
N10R10RcgAcgG11AY.3.10.000085
N10R10PcGacCa11AY.3.10.000085
N10R10delCGA---11AY.330.000067
N10R10LcGacTa11AY.390.000025
N10R10LcGacTa11AY.4.10.000737
N10R10delCGA---11AY.4.40.000409
N10R10delCGA---11AY.440.000006
N10R10LcGacTa11AY.450.000122
N10R10QcGacAa11AY.450.000122
N10R10PcGacCa11AY.450.000122
N10R10RCgaAga11AY.460.000104
N10R10QcGacAa11AY.46.10.001027
N10R10delCGA---11AY.46.30.000934
N10R10LcGacTa11AY.46.60.000072
N10R10delCGA---11AY.46.60.000072
N10R10LcGacTa11AY.470.000031
N10R10QcGacAa11AY.470.000031
N10R10QcGacAa11AY.490.003195
N10R10LcGacTa11AY.50.000021
N10R10RcgAcgT11AY.50.000021
N10R10delCGA---11AY.5.30.000337
N10R10QcGacAa11AY.5.30.000337
N10R10LcGacTa11AY.5.40.000277
N10R10PcGacCa11AY.540.000095
N10R10QcGacAa11AY.560.001605
N10R10QcGacAa11AY.620.000436
N10R10RCgaAga11AY.640.000595
N10R10QcGacAa11AY.670.000464
N10R10RcgAcgG11AY.7.10.000113
N10R10RcgAcgC11AY.740.000116
N10R10QcGacAa11AY.750.000056
N10R10QcGacAa11AY.760.004831
N10R10PcGacCa11AY.850.000427
N10R10RcgAcgT11AY.890.004902
N10R10PcGacCa11AY.90.000068
N10R10QcGacAa11AY.9.2.10.001976
N10R10RCgaAga11AY.920.000287
N10R10QcGacAa11AY.980.000079
N10R10LcGacTa11AY.98.10.000048
N10R10LcGacTa11AZ.20.000821
N10R10QcGacAa11B0.000128
N10R10PcGacCa11B0.000128
N10R10GCgaGga11B.10.000009
N10R10RcgAcgT11B.1.10.000018
N10R10XCgaTga11B.1.10.000018
N10R10delCGA---11B.1.10.000018
N10R10del1cgAcg-11B.1.10.000018
N10R10RCgaAga11B.1.1.1920.002309
N10R10PcGacCa11B.1.1.1980.001468
N10R10PcGacCa11B.1.1.2140.000055
N10R10LcGacTa11B.1.1.2510.007937
N10R10LcGacTa11B.1.1.2750.011236
N10R10PcGacCa11B.1.1.2840.000107
N10R10KCGaAAa11B.1.1.2910.000742
N10R10LcGacTa11B.1.1.2940.001266
N10R10LcGacTa11B.1.1.3020.002075
N10R10RCgaAga11B.1.1.3060.000438
N10R10PcGacCa11B.1.1.330.000421
N10R10LcGacTa11B.1.1.330.000421
N10R10QcGacAa11B.1.1.3720.000689
N10R10RcgAcgC11B.1.1.5190.00004
N10R10RCgaAga11B.1.1.620.027027
N10R10XCgaTga11B.1.1.70.000001
N10R10PcGacCa11B.1.1.700.000341
N10R10RCgaAga11B.1.1390.000733
N10R10QcGacAa11B.1.1390.000733
N10R10LcGacTa11B.1.1770.000013
N10R10GCgaGga11B.1.1770.000013
N10R10delCGA---11B.1.177.160.000664
N10R10XCgaTga11B.1.177.200.001517
N10R10LcGacTa11B.1.177.210.000076
N10R10LcGacTa11B.1.177.520.001757
N10R10XCgaTga11B.1.177.540.000606
N10R10XCgaTga11B.1.177.560.000668
N10R10delCGA---11B.1.177.560.000668
N10R10WCgATgG11B.1.177.630.002703
N10R10PcGacCa11B.1.177.830.001481
N10R10delCGA---11B.1.20.000009
N10R10del1cgAcg-11B.1.214.20.0006
N10R10QcGacAa11B.1.2190.009434
N10R10LcGacTa11B.1.220.001318
N10R10QcGacAa11B.1.2210.000071
N10R10delCGA---11B.1.221.10.002907
N10R10LcGacTa11B.1.2340.000132
N10R10XCgaTga11B.1.2400.000216
N10R10LcGacTa11B.1.2430.00007
N10R10QcGacAa11B.1.2580.000067
N10R10LcGacTa11B.1.2580.000067
N10R10LcGacTa11B.1.258.170.000104
N10R10LcGacTa11B.1.3110.000275
N10R10QcGacAa11B.1.3130.006579
N10R10XCgaTga11B.1.3250.006897
N10R10XCgaTga11B.1.3380.008621
N10R10PcGacCa11B.1.360.000146
N10R10QcGacAa11B.1.36.390.002217
N10R10QcGacAa11B.1.36.80.001
N10R10LcGacTa11B.1.3670.000792
N10R10XCgaTga11B.1.3750.00082
N10R10RcgAcgC11B.1.3960.000706
N10R10PcGacCa11B.1.3960.000706
N10R10XCgaTga11B.1.4290.000024
N10R10PcGacCa11B.1.440.008333
N10R10PcGacCa11B.1.5250.000113
N10R10LcGacTa11B.1.5260.000024
N10R10RcgAcgC11B.1.5260.000024
N10R10PcGacCa11B.1.5300.007143
N10R10LcGacTa11B.1.5950.000261
N10R10QcGacAa11B.1.5960.000087
N10R10QcGacAa11B.1.617.10.000129
N10R10RcgAcgC11B.1.617.10.000129
N10R10del1cgAcg-11B.1.617.20.000004
N10R10RcgAcgT11B.1.619.10.000641
N10R10QcGacAa11B.1.6200.000946
N10R10QcGacAa11B.1.621.10.000506
N10R10RcgAcgG11B.1.621.10.000506
N10R10LcGacTa11B.1.930.000934
N10R10RcgAcgG11B.400.000364
N10R10RcgAcgT11B.580.010204
N10R10QcGacAa11B.6.60.000889
N10R10QcGacAa11C.10.002392
N10R10RCgaAga11C.160.00106
N10R10QcGacAa11C.370.000116
N10R10PcGacCa11C.90.030303
N10R10RcgAcgG11D.20.000075
N10R10XCgaTga11D.20.000075
N10R10GCgaGga11P.10.000016
N10R10XCgaTga11P.10.000016
N10R10RcgAcgC11P.1.140.000048
N10R10GCgaGga11P.1.150.000232
N10R10RCgaAga11P.1.170.000162
N10R10LcGacTa11P.1.170.000162
N10R10delCGA---11P.1.70.000319
N10R10LcGacTa11Q.30.000145
N10R10GCgaGga11Q.80.000165