CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 71 | Y71Y | syn | taC | taT | 82021 | 82021 | 1 | 26733-26735 |
Details of the mutation Y71Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 71 | Y71Y | taC | taT | 82021 | 82021 | All | 0.015687 |
M | 71 | Y71Y | taC | taT | 29750 | 29750 | B.1.160 | 0.927832 |
M | 71 | Y71Y | taC | taT | 6734 | 6734 | B.1.36 | 0.982492 |
M | 71 | Y71Y | taC | taT | 3209 | 3209 | B.1.1.7 | 0.002873 |
M | 71 | Y71Y | taC | taT | 2677 | 2677 | B.1 | 0.02452 |
M | 71 | Y71Y | taC | taT | 2544 | 2544 | B.1.466.2 | 0.995305 |
M | 71 | Y71Y | taC | taT | 2379 | 2379 | B.1.36.18 | 0.99958 |
M | 71 | Y71Y | taC | taT | 2011 | 2011 | B.1.36.17 | 0.993577 |
M | 71 | Y71Y | taC | taT | 1916 | 1916 | B.1.36.29 | 0.991205 |
M | 71 | Y71Y | taC | taT | 1658 | 1658 | B.1.36.36 | 0.998194 |
M | 71 | Y71Y | taC | taT | 1307 | 1307 | B.1.36.27 | 0.99771 |
M | 71 | Y71Y | taC | taT | 1061 | 1061 | B.1.160.16 | 0.986059 |
M | 71 | Y71Y | taC | taT | 995 | 995 | B.1.36.8 | 0.995 |
M | 71 | Y71Y | taC | taT | 866 | 866 | B.1.36.1 | 0.987457 |
M | 71 | Y71Y | taC | taT | 819 | 819 | B.1.36.22 | 0.98913 |
M | 71 | Y71Y | taC | taT | 788 | 788 | AU.1 | 0.997468 |
M | 71 | Y71Y | taC | taT | 771 | 771 | B.1.160.8 | 0.993557 |
M | 71 | Y71Y | taC | taT | 717 | 717 | B.1.2 | 0.006313 |
M | 71 | Y71Y | taC | taT | 699 | 699 | B.1.36.16 | 0.995726 |
M | 71 | Y71Y | taC | taT | 690 | 690 | B.1.470 | 0.969101 |
M | 71 | Y71Y | taC | taT | 653 | 653 | AY.43 | 0.002893 |
M | 71 | Y71Y | taC | taT | 609 | 609 | B.1.36.38 | 1 |
M | 71 | Y71Y | taC | taT | 587 | 587 | B.1.160.17 | 0.998299 |
M | 71 | Y71Y | taC | taT | 570 | 570 | B.1.36.31 | 0.998249 |
M | 71 | Y71Y | taC | taT | 543 | 543 | AY.4 | 0.000845 |
M | 71 | Y71Y | taC | taT | 481 | 481 | B.1.160.7 | 1 |
M | 71 | Y71Y | taC | taT | 470 | 470 | AU.3 | 0.991561 |
M | 71 | Y71Y | taC | taT | 470 | 470 | B.1.160.14 | 0.995763 |
M | 71 | Y71Y | taC | taT | 463 | 463 | B.1.36.21 | 1 |
M | 71 | Y71Y | taC | taT | 450 | 450 | B.1.36.25 | 0.993377 |
M | 71 | Y71Y | taC | taT | 448 | 448 | B.1.36.39 | 0.993348 |
M | 71 | Y71Y | taC | taT | 415 | 415 | B.1.617.2 | 0.001563 |
M | 71 | Y71Y | taC | taT | 411 | 411 | B.1.160.26 | 0.995157 |
M | 71 | Y71Y | taC | taT | 408 | 408 | AU.2 | 0.987893 |
M | 71 | Y71Y | taC | taT | 401 | 401 | B.1.523 | 0.982843 |
M | 71 | Y71Y | taC | taT | 383 | 383 | B.1.36.35 | 0.997396 |
M | 71 | Y71Y | taC | taT | 361 | 361 | B.1.471 | 0.986339 |
M | 71 | Y71Y | taC | taT | 360 | 360 | B.1.36.37 | 1 |
M | 71 | Y71Y | taC | taT | 350 | 350 | B.1.36.26 | 1 |
M | 71 | Y71Y | taC | taT | 311 | 311 | B.1.36.9 | 1 |
M | 71 | Y71Y | taC | taT | 306 | 306 | B.1.456 | 1 |
M | 71 | Y71Y | taC | taT | 305 | 305 | B.1.346 | 0.399738 |
M | 71 | Y71Y | taC | taT | 293 | 293 | B.1.260 | 0.979933 |
M | 71 | Y71Y | taC | taT | 276 | 276 | B.1.469 | 0.99639 |
M | 71 | Y71Y | taC | taT | 260 | 260 | B.1.465 | 0.988593 |
M | 71 | Y71Y | taC | taT | 249 | 249 | B.1.36.7 | 0.996 |
M | 71 | Y71Y | taC | taT | 248 | 248 | B.1.160.28 | 0.725146 |
M | 71 | Y71Y | taC | taT | 237 | 237 | B.1.160.29 | 1 |
M | 71 | Y71Y | taC | taT | 235 | 235 | B.1.459 | 0.959184 |
M | 71 | Y71Y | taC | taT | 234 | 234 | B.1.1.519 | 0.009292 |
M | 71 | Y71Y | taC | taT | 226 | 226 | B.1.160.24 | 1 |
M | 71 | Y71Y | taC | taT | 220 | 220 | B.1.1 | 0.003991 |
M | 71 | Y71Y | taC | taT | 218 | 218 | B.1.160.33 | 0.964602 |
M | 71 | Y71Y | taC | taT | 207 | 207 | B.1.160.23 | 1 |
M | 71 | Y71Y | taC | taT | 204 | 204 | B.1.160.30 | 0.607143 |
M | 71 | Y71Y | taC | taT | 200 | 200 | B.1.160.15 | 0.990099 |
M | 71 | Y71Y | taC | taT | 189 | 189 | B.1.160.32 | 0.811159 |
M | 71 | Y71Y | taC | taT | 174 | 174 | B.1.160.11 | 0.994286 |
M | 71 | Y71Y | taC | taT | 173 | 173 | B.1.36.10 | 0.827751 |
M | 71 | Y71Y | taC | taT | 173 | 173 | B.1.36.28 | 0.994253 |
M | 71 | Y71Y | taC | taT | 165 | 165 | B.1.468 | 0.942857 |
M | 71 | Y71Y | taC | taT | 162 | 162 | B.1.36.24 | 1 |
M | 71 | Y71Y | taC | taT | 156 | 156 | B.1.160.12 | 1 |
M | 71 | Y71Y | taC | taT | 148 | 148 | B.1.160.22 | 1 |
M | 71 | Y71Y | taC | taT | 147 | 147 | B.1.602 | 0.960784 |
M | 71 | Y71Y | taC | taT | 146 | 146 | AY.99.2 | 0.013455 |
M | 71 | Y71Y | taC | taT | 139 | 139 | B.1.466.1 | 1 |
M | 71 | Y71Y | taC | taT | 137 | 137 | B.1.160.18 | 1 |
M | 71 | Y71Y | taC | taT | 137 | 137 | B.1.462 | 0.992754 |
M | 71 | Y71Y | taC | taT | 135 | 135 | B.1.177 | 0.001778 |
M | 71 | Y71Y | taC | taT | 132 | 132 | B.1.36.33 | 1 |
M | 71 | Y71Y | taC | taT | 125 | 125 | P.1 | 0.001969 |
M | 71 | Y71Y | taC | taT | 124 | 124 | B.1.160.31 | 1 |
M | 71 | Y71Y | taC | taT | 124 | 124 | B.1.463 | 1 |
M | 71 | Y71Y | taC | taT | 122 | 122 | AB.1 | 1 |
M | 71 | Y71Y | taC | taT | 122 | 122 | B.1.160.10 | 0.983871 |
M | 71 | Y71Y | taC | taT | 121 | 121 | B.1.160.9 | 0.870504 |
M | 71 | Y71Y | taC | taT | 120 | 120 | AY.44 | 0.00073 |
M | 71 | Y71Y | taC | taT | 104 | 104 | B.1.36.12 | 1 |
M | 71 | Y71Y | taC | taT | 104 | 104 | B.1.36.19 | 0.962963 |
M | 71 | Y71Y | taC | taT | 102 | 102 | AY.103 | 0.000633 |
M | 71 | Y71Y | taC | taT | 96 | 96 | AY.25 | 0.000577 |
M | 71 | Y71Y | taC | taT | 95 | 95 | AY.20 | 0.003692 |
M | 71 | Y71Y | taC | taT | 92 | 92 | B.1.36.2 | 0.989247 |
M | 71 | Y71Y | taC | taT | 91 | 91 | B.1.561 | 0.036125 |
M | 71 | Y71Y | taC | taT | 89 | 89 | B.1.160.25 | 0.988889 |
M | 71 | Y71Y | taC | taT | 85 | 85 | AY.23 | 0.005929 |
M | 71 | Y71Y | taC | taT | 80 | 80 | B.1.1.214 | 0.004437 |
M | 71 | Y71Y | taC | taT | 80 | 80 | B.1.1.526 | 0.283688 |
M | 71 | Y71Y | taC | taT | 80 | 80 | B.1.160.20 | 0.714286 |
M | 71 | Y71Y | taC | taT | 71 | 71 | B.1.221 | 0.005043 |
M | 71 | Y71Y | taC | taT | 68 | 68 | C.37 | 0.007892 |
M | 71 | Y71Y | taC | taT | 67 | 67 | B.1.533 | 0.644231 |
M | 71 | Y71Y | taC | taT | 66 | 66 | B.1.160.27 | 1 |
M | 71 | Y71Y | taC | taT | 61 | 61 | B.1.36.23 | 1 |
M | 71 | Y71Y | taC | taT | 58 | 58 | B.1.36.20 | 0.983051 |
M | 71 | Y71Y | taC | taT | 57 | 57 | AY.39 | 0.001409 |
M | 71 | Y71Y | taC | taT | 56 | 56 | B.1.460 | 1 |
M | 71 | Y71Y | taC | taT | 54 | 54 | AY.9.2 | 0.001983 |
M | 71 | Y71Y | taC | taT | 54 | 54 | B.1.562 | 1 |
M | 71 | Y71Y | taC | taT | 52 | 52 | AY.42 | 0.002092 |
M | 71 | Y71Y | taC | taT | 51 | 51 | AY.118 | 0.003195 |
M | 71 | Y71Y | taC | taT | 49 | 49 | B.1.160.21 | 1 |
M | 71 | Y71Y | taC | taT | 47 | 47 | B.1.247 | 0.701493 |
M | 71 | Y71Y | taC | taT | 47 | 47 | B.1.36.34 | 1 |
M | 71 | Y71Y | taC | taT | 45 | 45 | AY.4.2 | 0.000976 |
M | 71 | Y71Y | taC | taT | 45 | 45 | B.1.113 | 0.703125 |
M | 71 | Y71Y | taC | taT | 43 | 43 | AY.3 | 0.000428 |
M | 71 | Y71Y | taC | taT | 42 | 42 | B.1.351 | 0.001249 |
M | 71 | Y71Y | taC | taT | 42 | 42 | B.1.525 | 0.004753 |
M | 71 | Y71Y | taC | taT | 41 | 41 | B.1.1.39 | 0.020897 |
M | 71 | Y71Y | taC | taT | 41 | 41 | B.1.466 | 0.953488 |
M | 71 | Y71Y | taC | taT | 40 | 40 | AY.75 | 0.002241 |
M | 71 | Y71Y | taC | taT | 40 | 40 | B | 0.005112 |
M | 71 | Y71Y | taC | taT | 37 | 37 | Q.8 | 0.006102 |
M | 71 | Y71Y | taC | taT | 36 | 36 | B.1.160.13 | 1 |
M | 71 | Y71Y | taC | taT | 35 | 35 | AY.102 | 0.000928 |
M | 71 | Y71Y | taC | taT | 34 | 34 | B.1.177.44 | 0.017644 |
M | 71 | Y71Y | taC | taT | 34 | 34 | B.1.243 | 0.002366 |
M | 71 | Y71Y | taC | taT | 34 | 34 | B.1.351.2 | 0.010287 |
M | 71 | Y71Y | taC | taT | 32 | 32 | B.1.258 | 0.00213 |
M | 71 | Y71Y | taC | taT | 31 | 31 | B.40 | 0.011293 |
M | 71 | Y71Y | taC | taT | 29 | 29 | B.1.526 | 0.000682 |
M | 71 | Y71Y | taC | taT | 28 | 28 | B.1.160.19 | 1 |
M | 71 | Y71Y | taC | taT | 28 | 28 | B.1.282 | 0.41791 |
M | 71 | Y71Y | taC | taT | 28 | 28 | B.1.596 | 0.00244 |
M | 71 | Y71Y | taC | taT | 27 | 27 | AY.6 | 0.00111 |
M | 71 | Y71Y | taC | taT | 26 | 26 | AY.5 | 0.000537 |
M | 71 | Y71Y | taC | taT | 26 | 26 | AY.92 | 0.007469 |
M | 71 | Y71Y | taC | taT | 25 | 25 | AY.119 | 0.000883 |
M | 71 | Y71Y | taC | taT | 25 | 25 | AY.29 | 0.000394 |
M | 71 | Y71Y | taC | taT | 25 | 25 | AY.51 | 0.022727 |
M | 71 | Y71Y | taC | taT | 25 | 25 | B.1.1.445 | 0.925926 |
M | 71 | Y71Y | taC | taT | 24 | 24 | AY.98.1 | 0.001162 |
M | 71 | Y71Y | taC | taT | 24 | 24 | B.1.467 | 0.96 |
M | 71 | Y71Y | taC | taT | 23 | 23 | AY.47 | 0.000715 |
M | 71 | Y71Y | taC | taT | 23 | 23 | B.1.177.73 | 0.013024 |
M | 71 | Y71Y | taC | taT | 21 | 21 | A | 0.008127 |
M | 71 | Y71Y | taC | taT | 21 | 21 | B.1.258.11 | 0.008323 |
M | 71 | Y71Y | taC | taT | 21 | 21 | B.1.637 | 0.001535 |
M | 71 | Y71Y | taC | taT | 20 | 20 | AY.57 | 0.013123 |
M | 71 | Y71Y | taC | taT | 19 | 19 | B.1.258.17 | 0.001975 |
M | 71 | Y71Y | taC | taT | 18 | 18 | AY.100 | 0.000828 |
M | 71 | Y71Y | taC | taT | 18 | 18 | AY.33 | 0.001202 |
M | 71 | Y71Y | taC | taT | 18 | 18 | B.1.1.33 | 0.007576 |
M | 71 | Y71Y | taC | taT | 18 | 18 | B.1.258.22 | 0.048 |
M | 71 | Y71Y | taC | taT | 18 | 18 | B.1.617.1 | 0.002321 |
M | 71 | Y71Y | taC | taT | 17 | 17 | B.1.426 | 0.017154 |
M | 71 | Y71Y | taC | taT | 17 | 17 | B.1.633 | 0.708333 |
M | 71 | Y71Y | taC | taT | 17 | 17 | Q.3 | 0.002466 |
M | 71 | Y71Y | taC | taT | 16 | 16 | AY.117 | 0.001352 |
M | 71 | Y71Y | taC | taT | 16 | 16 | AY.39.1 | 0.000634 |
M | 71 | Y71Y | taC | taT | 16 | 16 | AY.54 | 0.001526 |
M | 71 | Y71Y | taC | taT | 15 | 15 | AY.121 | 0.00203 |
M | 71 | Y71Y | taC | taT | 15 | 15 | B.1.177.43 | 0.022157 |
M | 71 | Y71Y | taC | taT | 15 | 15 | B.1.425 | 0.04491 |
M | 71 | Y71Y | taC | taT | 14 | 14 | AY.38 | 0.00699 |
M | 71 | Y71Y | taC | taT | 13 | 13 | B.1.184 | 0.764706 |
M | 71 | Y71Y | taC | taT | 13 | 13 | B.1.474 | 0.024715 |
M | 71 | Y71Y | taC | taT | 12 | 12 | AY.46.4 | 0.001974 |
M | 71 | Y71Y | taC | taT | 12 | 12 | B.31 | 0.044776 |
M | 71 | Y71Y | taC | taT | 12 | 12 | P.1.14 | 0.000574 |
M | 71 | Y71Y | taC | taT | 11 | 11 | B.1.265 | 0.013977 |
M | 71 | Y71Y | taC | taT | 11 | 11 | B.1.362 | 0.016949 |
M | 71 | Y71Y | taC | taT | 11 | 11 | B.1.416 | 0.013959 |
M | 71 | Y71Y | taC | taT | 11 | 11 | B.1.609 | 0.005273 |
M | 71 | Y71Y | taC | taT | 11 | 11 | B.39 | 0.025641 |
M | 71 | Y71Y | taC | taT | 10 | 10 | B.1.1.10 | 0.011148 |
M | 71 | Y71Y | taC | taT | 10 | 10 | B.1.1.318 | 0.003018 |
M | 71 | Y71Y | taC | taT | 10 | 10 | B.23 | 0.02924 |
M | 71 | Y71Y | taC | taT | 10 | 10 | P.7 | 0.043668 |
M | 71 | Y71Y | taC | taT | 10 | 10 | Q.1 | 0.001263 |
M | 71 | Y71Y | taC | taT | 9 | 9 | AY.61 | 0.000943 |
M | 71 | Y71Y | taC | taT | 9 | 9 | B.1.1.153 | 0.009858 |
M | 71 | Y71Y | taC | taT | 9 | 9 | B.1.429 | 0.000212 |
M | 71 | Y71Y | taC | taT | 9 | 9 | B.1.458 | 1 |
M | 71 | Y71Y | taC | taT | 9 | 9 | P.2 | 0.00168 |
M | 71 | Y71Y | taC | taT | 8 | 8 | AY.27 | 0.000518 |
M | 71 | Y71Y | taC | taT | 8 | 8 | AY.4.5 | 0.00086 |
M | 71 | Y71Y | taC | taT | 8 | 8 | B.1.1.322 | 0.070175 |
M | 71 | Y71Y | taC | taT | 8 | 8 | B.1.1.70 | 0.002729 |
M | 71 | Y71Y | taC | taT | 8 | 8 | B.1.234 | 0.001056 |
M | 71 | Y71Y | taC | taT | 8 | 8 | B.1.240 | 0.001725 |
M | 71 | Y71Y | taC | taT | 8 | 8 | B.1.509 | 0.006926 |
M | 71 | Y71Y | taC | taT | 7 | 7 | AY.113 | 0.000997 |
M | 71 | Y71Y | taC | taT | 7 | 7 | AY.26 | 0.000198 |
M | 71 | Y71Y | taC | taT | 7 | 7 | B.1.1.306 | 0.003069 |
M | 71 | Y71Y | taC | taT | 7 | 7 | B.1.157 | 0.020896 |
M | 71 | Y71Y | taC | taT | 7 | 7 | B.1.177.81 | 0.001325 |
M | 71 | Y71Y | taC | taT | 7 | 7 | B.1.214 | 0.025641 |
M | 71 | Y71Y | taC | taT | 7 | 7 | B.1.9.5 | 0.039773 |
M | 71 | Y71Y | taC | taT | 7 | 7 | B.34 | 0.09589 |
M | 71 | Y71Y | taC | taT | 6 | 6 | AY.16.1 | 0.00282 |
M | 71 | Y71Y | taC | taT | 6 | 6 | AY.3.1 | 0.000512 |
M | 71 | Y71Y | taC | taT | 6 | 6 | AY.34 | 0.000582 |
M | 71 | Y71Y | taC | taT | 6 | 6 | AY.79 | 0.007264 |
M | 71 | Y71Y | taC | taT | 6 | 6 | B.1.1.198 | 0.008811 |
M | 71 | Y71Y | taC | taT | 6 | 6 | B.1.1.284 | 0.000644 |
M | 71 | Y71Y | taC | taT | 6 | 6 | B.1.1.312 | 0.011472 |
M | 71 | Y71Y | taC | taT | 6 | 6 | B.1.236 | 0.01232 |
M | 71 | Y71Y | taC | taT | 6 | 6 | B.1.367 | 0.004754 |
M | 71 | Y71Y | taC | taT | 6 | 6 | B.1.428 | 0.006122 |
M | 71 | Y71Y | taC | taT | 6 | 6 | B.1.595 | 0.001566 |
M | 71 | Y71Y | taC | taT | 6 | 6 | C.16 | 0.006363 |
M | 71 | Y71Y | taC | taT | 5 | 5 | AY.1 | 0.001979 |
M | 71 | Y71Y | taC | taT | 5 | 5 | AY.108 | 0.005513 |
M | 71 | Y71Y | taC | taT | 5 | 5 | AY.110 | 0.000563 |
M | 71 | Y71Y | taC | taT | 5 | 5 | AY.36 | 0.000741 |
M | 71 | Y71Y | taC | taT | 5 | 5 | AY.45 | 0.000608 |
M | 71 | Y71Y | taC | taT | 5 | 5 | AY.46.6 | 0.000361 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.1.222 | 0.00102 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.1.335 | 0.064935 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.1.37 | 0.000964 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.1.409 | 0.014164 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.177.86 | 0.000917 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.396 | 0.003529 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.400 | 0.002145 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.473 | 0.096154 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.564 | 0.002129 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.621 | 0.000443 |
M | 71 | Y71Y | taC | taT | 5 | 5 | B.1.8 | 0.009862 |
M | 71 | Y71Y | taC | taT | 4 | 4 | AY.24 | 0.001724 |
M | 71 | Y71Y | taC | taT | 4 | 4 | AY.4.2.1 | 0.000596 |
M | 71 | Y71Y | taC | taT | 4 | 4 | AY.60 | 0.003752 |
M | 71 | Y71Y | taC | taT | 4 | 4 | AY.98 | 0.000316 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.1.189 | 0.006051 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.1.25 | 0.002274 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.1.326 | 0.007042 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.1.413 | 0.027586 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.1.89 | 0.024242 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.177.23 | 0.012945 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.177.57 | 0.001124 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.177.60 | 0.000874 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.222 | 0.006768 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.427 | 0.000202 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.438.1 | 0.000429 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.1.623 | 0.002146 |
M | 71 | Y71Y | taC | taT | 4 | 4 | B.6 | 0.00364 |
M | 71 | Y71Y | taC | taT | 4 | 4 | C.36 | 0.003643 |
M | 71 | Y71Y | taC | taT | 4 | 4 | P.1.17 | 0.000647 |
M | 71 | Y71Y | taC | taT | 3 | 3 | AY.41 | 0.000882 |
M | 71 | Y71Y | taC | taT | 3 | 3 | AY.46.3 | 0.002801 |
M | 71 | Y71Y | taC | taT | 3 | 3 | AY.49 | 0.009585 |
M | 71 | Y71Y | taC | taT | 3 | 3 | AY.62 | 0.001307 |
M | 71 | Y71Y | taC | taT | 3 | 3 | AY.75.1 | 0.000541 |
M | 71 | Y71Y | taC | taT | 3 | 3 | AY.84 | 0.001312 |
M | 71 | Y71Y | taC | taT | 3 | 3 | AY.9.1 | 0.000251 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.1.1 | 0.00098 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.1.220 | 0.005576 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.1.376 | 0.017857 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.1.432 | 0.003797 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.1.434 | 0.001046 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.1.54 | 0.009063 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.118 | 0.020134 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.177.12 | 0.000455 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.177.31 | 0.034483 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.177.75 | 0.003122 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.324 | 0.004815 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.404 | 0.003906 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.409 | 0.002344 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.415.1 | 0.022727 |
M | 71 | Y71Y | taC | taT | 3 | 3 | B.1.575 | 0.00091 |
M | 71 | Y71Y | taC | taT | 2 | 2 | 0.111111 | |
M | 71 | Y71Y | taC | taT | 2 | 2 | A.1 | 0.000564 |
M | 71 | Y71Y | taC | taT | 2 | 2 | A.2 | 0.001324 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AD.2 | 0.000438 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.101 | 0.000981 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.106 | 0.00067 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.14 | 0.000176 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.16 | 0.000759 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.30 | 0.000791 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.34.1 | 0.00102 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.35 | 0.000466 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.46 | 0.000208 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.46.2 | 0.001271 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.5.3 | 0.000675 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.65 | 0.001066 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.72 | 0.002721 |
M | 71 | Y71Y | taC | taT | 2 | 2 | AY.93 | 0.000546 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.122 | 0.090909 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.141 | 0.004024 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.221 | 0.020202 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.27 | 0.011299 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.28 | 0.000622 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.291 | 0.001485 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.311 | 0.000716 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.348 | 0.001592 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.369 | 0.000892 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.486 | 0.003155 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.51 | 0.003436 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.57 | 0.022989 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.1.83 | 0.00542 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.110.3 | 0.001437 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.111 | 0.00235 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.124 | 0.015625 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.177.10 | 0.001756 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.177.21 | 0.000153 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.177.4 | 0.000422 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.177.52 | 0.003515 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.177.7 | 0.00033 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.177.83 | 0.002963 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.237 | 0.00995 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.279 | 0.001027 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.3 | 0.005236 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.311 | 0.000549 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.326 | 0.015152 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.369 | 0.00057 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.375 | 0.001639 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.416.1 | 0.003125 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.442 | 0.071429 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.453 | 0.006472 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.478 | 0.023529 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.480 | 0.004975 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.556 | 0.015038 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.565 | 0.001621 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.1.577 | 0.001375 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.4.1 | 0.037736 |
M | 71 | Y71Y | taC | taT | 2 | 2 | B.55 | 0.0059 |
M | 71 | Y71Y | taC | taT | 2 | 2 | C.1 | 0.004785 |
M | 71 | Y71Y | taC | taT | 2 | 2 | C.36.3 | 0.001134 |
M | 71 | Y71Y | taC | taT | 2 | 2 | N.5 | 0.003534 |
M | 71 | Y71Y | taC | taT | 2 | 2 | P.5 | 0.027397 |
M | 71 | Y71Y | taC | taT | 2 | 2 | Q.4 | 0.00091 |
M | 71 | Y71Y | taC | taT | 1 | 1 | A.2.4 | 0.003367 |
M | 71 | Y71Y | taC | taT | 1 | 1 | A.2.5 | 0.000499 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AF.1 | 0.037037 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AP.1 | 0.001502 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AT.1 | 0.005128 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.104 | 0.001984 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.116 | 0.000287 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.120 | 0.000037 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.120.1 | 0.000321 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.2 | 0.000356 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.32 | 0.000532 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.59 | 0.00053 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.67 | 0.000464 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.69 | 0.000187 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.73 | 0.000665 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.81 | 0.001992 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.85 | 0.000427 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.9 | 0.000068 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AY.91 | 0.00073 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AZ.2 | 0.000821 |
M | 71 | Y71Y | taC | taT | 1 | 1 | AZ.4 | 0.003356 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.161 | 0.003534 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.170 | 0.001247 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.171 | 0.003676 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.231 | 0.003096 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.236 | 0.006897 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.254 | 0.011236 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.277 | 0.000759 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.285 | 0.006536 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.294 | 0.001266 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.301 | 0.001179 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.305 | 0.003861 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.317 | 0.000412 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.339 | 0.010526 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.351 | 0.002793 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.354 | 0.004386 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.363 | 0.005988 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.385 | 0.004464 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.389 | 0.006061 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.421 | 0.030303 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.447 | 0.035714 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.448 | 0.002033 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.47 | 0.005348 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.1.485 | 0.016667 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.104 | 0.00369 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.128 | 0.000635 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.139 | 0.000733 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.143 | 0.021277 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.145 | 0.052632 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.146 | 0.004237 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.164 | 0.014925 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.170 | 0.00431 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.177.16 | 0.000664 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.177.45 | 0.000381 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.177.54 | 0.000606 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.177.6 | 0.000977 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.177.77 | 0.000726 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.177.9 | 0.001332 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.210 | 0.002132 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.239 | 0.001221 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.258.21 | 0.007752 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.258.5 | 0.008772 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.258.7 | 0.001912 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.268 | 0.010417 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.270 | 0.005618 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.336 | 0.002439 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.349 | 0.000715 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.351.3 | 0.000876 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.361 | 0.001289 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.371 | 0.001122 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.381 | 0.007812 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.389 | 0.001002 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.397 | 0.004854 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.423 | 0.010204 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.432 | 0.011236 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.497 | 0.000315 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.499 | 0.00105 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.537 | 0.02 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.542 | 0.03125 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.548 | 0.035714 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.558 | 0.004566 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.567 | 0.003333 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.581 | 0.009434 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.582 | 0.000491 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.590 | 0.004545 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.600 | 0.005848 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.601 | 0.030303 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.606 | 0.006024 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.621.1 | 0.000506 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.628 | 0.000352 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.631 | 0.003367 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.1.9 | 0.006173 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.3 | 0.000831 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.4 | 0.002208 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.4.5 | 0.011905 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.47 | 0.020408 |
M | 71 | Y71Y | taC | taT | 1 | 1 | B.6.6 | 0.000889 |
M | 71 | Y71Y | taC | taT | 1 | 1 | C.1.2 | 0.004255 |
M | 71 | Y71Y | taC | taT | 1 | 1 | C.17 | 0.055556 |
M | 71 | Y71Y | taC | taT | 1 | 1 | C.38 | 0.008065 |
M | 71 | Y71Y | taC | taT | 1 | 1 | D.2 | 0.000075 |
M | 71 | Y71Y | taC | taT | 1 | 1 | K.2 | 0.04 |
M | 71 | Y71Y | taC | taT | 1 | 1 | N.3 | 0.005814 |
M | 71 | Y71Y | taC | taT | 1 | 1 | P.1.10.1 | 0.00813 |
M | 71 | Y71Y | taC | taT | 1 | 1 | P.1.12 | 0.000484 |
M | 71 | Y71Y | taC | taT | 1 | 1 | P.1.16 | 0.000374 |
M | 71 | Y71Y | taC | taT | 1 | 1 | P.1.7 | 0.000319 |
M | 71 | Y71Y | taC | taT | 1 | 1 | Z.1 | 0.00289 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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