CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = V70F

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M70V70FnonsynGttTtt44254425126730-26732

Details of the mutation V70F within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M70V70FGttTtt44254425All0.000846
M70V70FGttTtt838838B.1.1.2070.990544
M70V70FGttTtt591591AY.40.00092
M70V70FGttTtt403403B.1.1.70.000361
M70V70FGttTtt369369B.1.10.006694
M70V70FGttTtt265265B.1.617.20.000998
M70V70FGttTtt131131B.10.0012
M70V70FGttTtt8989B.1.1.3440.956989
M70V70FGttTtt8787R.10.007831
M70V70FGttTtt8484AY.250.000505
M70V70FGttTtt8181AY.30.000806
M70V70FGttTtt7979AY.430.00035
M70V70FGttTtt6969P.10.001087
M70V70FGttTtt6767AY.1000.003082
M70V70FGttTtt6767AY.1030.000416
M70V70FGttTtt6666B.1.20.000581
M70V70FGttTtt5959B.1.1770.000777
M70V70FGttTtt5858AY.440.000353
M70V70FGttTtt4646B.1.1.630.017747
M70V70FGttTtt4444AY.420.00177
M70V70FGttTtt4444B.1.1.5190.001747
M70V70FGttTtt3939B.1.617.10.00503
M70V70FGttTtt3737AY.270.002395
M70V70FGttTtt2727AY.4.20.000586
M70V70FGttTtt2626B.1.5960.002266
M70V70FGttTtt2525AY.1190.000883
M70V70FGttTtt2424B.1.1600.000749
M70V70FGttTtt2323B.1.177.770.016703
M70V70FGttTtt2222AY.390.000544
M70V70FGttTtt1919AY.1020.000504
M70V70FGttTtt1919AY.610.001991
M70V70FGttTtt1818AY.290.000284
M70V70FGttTtt1818AY.98.10.000872
M70V70FGttTtt1818B.1.2580.001198
M70V70FGttTtt1414AY.200.000544
M70V70FGttTtt1414B.1.2790.007191
M70V70FGttTtt1313AY.140.001144
M70V70FGttTtt1313B.1.1.1890.019667
M70V70FGttTtt1111B.1.1.3110.00394
M70V70FGttTtt1111P.1.140.000526
M70V70FGttTtt1010B.1.5260.000235
M70V70FGttTtt99AY.1130.001282
M70V70FGttTtt99AY.1210.001218
M70V70FGttTtt99AY.230.000628
M70V70FGttTtt99B.1.258.170.000936
M70V70FGttTtt99B.1.4970.002833
M70V70FGttTtt99P.1.150.002091
M70V70FGttTtt99V.20.290323
M70V70FGttTtt88AY.260.000226
M70V70FGttTtt88AY.330.000534
M70V70FGttTtt88AY.470.000249
M70V70FGttTtt88B.1.1.3480.006369
M70V70FGttTtt88P.1.70.002554
M70V70FGttTtt77AY.46.60.000505
M70V70FGttTtt77AY.750.000392
M70V70FGttTtt77AY.99.20.000645
M70V70FGttTtt77B.1.1.5070.06087
M70V70FGttTtt77B.1.4270.000353
M70V70FGttTtt77B.1.5250.000792
M70V70FGttTtt77B.1.6280.002467
M70V70FGttTtt66AY.29.10.001323
M70V70FGttTtt66AY.60.000247
M70V70FGttTtt66B.1.1.2140.000333
M70V70FGttTtt66B.1.6090.002876
M70V70FGttTtt66B.1.6210.000531
M70V70FGttTtt55AY.1110.000916
M70V70FGttTtt55AY.530.001438
M70V70FGttTtt55AY.930.001365
M70V70FGttTtt55B0.000639
M70V70FGttTtt55B.1.2430.000348
M70V70FGttTtt55B.1.2520.033113
M70V70FGttTtt55B.1.351.20.001513
M70V70FGttTtt44A0.001548
M70V70FGttTtt44AY.1140.000924
M70V70FGttTtt44AY.1170.000338
M70V70FGttTtt44AY.3.10.000341
M70V70FGttTtt44AY.340.000388
M70V70FGttTtt44AY.4.40.001637
M70V70FGttTtt44AY.450.000487
M70V70FGttTtt44AY.460.000416
M70V70FGttTtt44B.1.1.250.002274
M70V70FGttTtt44B.1.1.2840.00043
M70V70FGttTtt44B.1.1.3010.004717
M70V70FGttTtt44B.1.1.370.000771
M70V70FGttTtt44B.1.1.4620.034483
M70V70FGttTtt44B.1.1.610.035088
M70V70FGttTtt44B.1.1390.002933
M70V70FGttTtt44B.1.177.600.000874
M70V70FGttTtt44B.1.214.20.002398
M70V70FGttTtt44B.1.2400.000862
M70V70FGttTtt44B.1.6370.000292
M70V70FGttTtt44C.350.003096
M70V70FGttTtt33AY.1050.001929
M70V70FGttTtt33AY.1160.00086
M70V70FGttTtt33AY.1200.000112
M70V70FGttTtt33AY.46.10.00308
M70V70FGttTtt33AY.50.000062
M70V70FGttTtt33AY.75.10.000541
M70V70FGttTtt33AY.90.000203
M70V70FGttTtt33AY.9.20.00011
M70V70FGttTtt33B.1.3510.000089
M70V70FGttTtt33B.1.360.000438
M70V70FGttTtt33B.1.415.10.022727
M70V70FGttTtt33B.1.4290.000071
M70V70FGttTtt33B.1.5870.005693
M70V70FGttTtt33B.1.6270.006061
M70V70FGttTtt33B.40.006623
M70V70FGttTtt33P.1.130.002695
M70V70FGttTtt22AY.1180.000125
M70V70FGttTtt22AY.160.000759
M70V70FGttTtt22AY.370.000632
M70V70FGttTtt22AY.4.50.000215
M70V70FGttTtt22AY.46.50.000397
M70V70FGttTtt22AY.5.40.000553
M70V70FGttTtt22AY.550.001835
M70V70FGttTtt22AY.590.001059
M70V70FGttTtt22AY.690.000373
M70V70FGttTtt22AY.70.000392
M70V70FGttTtt22AY.840.000875
M70V70FGttTtt22AY.920.000575
M70V70FGttTtt22AY.990.002099
M70V70FGttTtt22B.1.1.10.000653
M70V70FGttTtt22B.1.1.2160.001781
M70V70FGttTtt22B.1.1.2790.002242
M70V70FGttTtt22B.1.1.3260.003521
M70V70FGttTtt22B.1.1.3690.000892
M70V70FGttTtt22B.1.1.3980.006452
M70V70FGttTtt22B.1.1.4100.074074
M70V70FGttTtt22B.1.160.80.002577
M70V70FGttTtt22B.1.177.330.003289
M70V70FGttTtt22B.1.177.810.000379
M70V70FGttTtt22B.1.177.870.001456
M70V70FGttTtt22B.1.2100.004264
M70V70FGttTtt22B.1.2210.000142
M70V70FGttTtt22B.1.2340.000264
M70V70FGttTtt22B.1.5170.000854
M70V70FGttTtt22B.1.5640.000852
M70V70FGttTtt22B.1.5950.000522
M70V70FGttTtt22C.360.001821
M70V70FGttTtt22C.370.000232
M70V70FGttTtt22P.1.160.000748
M70V70FGttTtt11A.2.20.001689
M70V70FGttTtt11A.2.40.003367
M70V70FGttTtt11AP.10.001502
M70V70FGttTtt11AY.1070.000466
M70V70FGttTtt11AY.220.002092
M70V70FGttTtt11AY.34.10.00051
M70V70FGttTtt11AY.380.000499
M70V70FGttTtt11AY.39.10.00004
M70V70FGttTtt11AY.4.30.000842
M70V70FGttTtt11AY.5.30.000337
M70V70FGttTtt11AY.620.000436
M70V70FGttTtt11AY.640.000595
M70V70FGttTtt11AY.670.000464
M70V70FGttTtt11AY.7.10.000113
M70V70FGttTtt11AY.700.000209
M70V70FGttTtt11AY.770.001127
M70V70FGttTtt11AY.890.004902
M70V70FGttTtt11AY.9.10.000084
M70V70FGttTtt11AY.940.000443
M70V70FGttTtt11AY.950.000761
M70V70FGttTtt11AY.970.001701
M70V70FGttTtt11AZ.30.00152
M70V70FGttTtt11B.1.1.1740.003378
M70V70FGttTtt11B.1.1.2050.003717
M70V70FGttTtt11B.1.1.2220.000204
M70V70FGttTtt11B.1.1.2610.008621
M70V70FGttTtt11B.1.1.2740.005051
M70V70FGttTtt11B.1.1.2770.000759
M70V70FGttTtt11B.1.1.3060.000438
M70V70FGttTtt11B.1.1.3070.002532
M70V70FGttTtt11B.1.1.3170.000412
M70V70FGttTtt11B.1.1.330.000421
M70V70FGttTtt11B.1.1.410.006329
M70V70FGttTtt11B.1.1.440.00241
M70V70FGttTtt11B.1.1.500.000679
M70V70FGttTtt11B.1.1040.00369
M70V70FGttTtt11B.1.1580.02381
M70V70FGttTtt11B.1.177.190.001431
M70V70FGttTtt11B.1.177.210.000076
M70V70FGttTtt11B.1.177.230.003236
M70V70FGttTtt11B.1.177.430.001477
M70V70FGttTtt11B.1.177.540.000606
M70V70FGttTtt11B.1.177.570.000281
M70V70FGttTtt11B.1.177.650.000665
M70V70FGttTtt11B.1.1790.003759
M70V70FGttTtt11B.1.2320.000537
M70V70FGttTtt11B.1.2360.002053
M70V70FGttTtt11B.1.3110.000275
M70V70FGttTtt11B.1.3560.001727
M70V70FGttTtt11B.1.36.350.002604
M70V70FGttTtt11B.1.3670.000792
M70V70FGttTtt11B.1.3780.006849
M70V70FGttTtt11B.1.3830.009009
M70V70FGttTtt11B.1.3930.028571
M70V70FGttTtt11B.1.4160.001269
M70V70FGttTtt11B.1.4180.015873
M70V70FGttTtt11B.1.438.10.000107
M70V70FGttTtt11B.1.4440.015873
M70V70FGttTtt11B.1.5820.000491
M70V70FGttTtt11B.1.5890.007576
M70V70FGttTtt11B.1.6190.000871
M70V70FGttTtt11B.1.6250.002353
M70V70FGttTtt11B.1.6380.052632
M70V70FGttTtt11B.270.015385
M70V70FGttTtt11B.280.003279
M70V70FGttTtt11B.60.00091
M70V70FGttTtt11B.6.60.000889
M70V70FGttTtt11C.36.30.000567
M70V70FGttTtt11D.20.000075
M70V70FGttTtt11N.10.016949
M70V70FGttTtt11N.40.004255
M70V70FGttTtt11N.50.001767
M70V70FGttTtt11P.1.120.000484
M70V70FGttTtt11P.20.000187
M70V70FGttTtt11Q.30.000145
M70V70FGttTtt11Q.40.000455

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.