CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = T175M

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M175T175MnonsynaCgaTg27902790127045-27047

Details of the mutation T175M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M175T175MaCgaTg27902790All0.000534
M175T175MaCgaTg12221222B.1.10.022168
M175T175MaCgaTg196196B.1.1.70.000175
M175T175MaCgaTg152152AY.40.000237
M175T175MaCgaTg119119B.1.617.20.000448
M175T175MaCgaTg103103B.1.1.2571
M175T175MaCgaTg8282B.10.000751
M175T175MaCgaTg7070B.1.1.3230.985915
M175T175MaCgaTg5252B.1.1.1420.912281
M175T175MaCgaTg5252B.1.1.170.866667
M175T175MaCgaTg4848AY.430.000213
M175T175MaCgaTg4343B.1.1770.000566
M175T175MaCgaTg3838AY.290.000599
M175T175MaCgaTg3333AY.140.002904
M175T175MaCgaTg3333AY.250.000198
M175T175MaCgaTg2727AY.270.001747
M175T175MaCgaTg2525AY.440.000152
M175T175MaCgaTg2020B.1.177.600.004369
M175T175MaCgaTg2020B.1.20.000176
M175T175MaCgaTg1717AY.260.000481
M175T175MaCgaTg1717B0.002173
M175T175MaCgaTg1616AY.99.20.001475
M175T175MaCgaTg1515AY.1030.000093
M175T175MaCgaTg1515AY.30.000149
M175T175MaCgaTg1414AY.1020.000371
M175T175MaCgaTg1313AY.1180.000814
M175T175MaCgaTg1010AY.330.000668
M175T175MaCgaTg1010AY.60.000411
M175T175MaCgaTg99B.1.1.2220.001836
M175T175MaCgaTg99B.1.1.3190.157895
M175T175MaCgaTg88AY.390.000198
M175T175MaCgaTg88B.1.1.4340.002788
M175T175MaCgaTg88B.1.1.5190.000318
M175T175MaCgaTg88B.1.3910.009019
M175T175MaCgaTg88B.1.4290.000188
M175T175MaCgaTg88B.1.5960.000697
M175T175MaCgaTg77AY.3.10.000597
M175T175MaCgaTg77AY.750.000392
M175T175MaCgaTg66AY.200.000233
M175T175MaCgaTg66AY.50.000124
M175T175MaCgaTg66B.1.1.2140.000333
M175T175MaCgaTg66B.1.3510.000178
M175T175MaCgaTg66B.1.5260.000141
M175T175MaCgaTg66P.10.000095
M175T175MaCgaTg55AY.320.002662
M175T175MaCgaTg55AY.420.000201
M175T175MaCgaTg55AY.540.000477
M175T175MaCgaTg55AY.980.000395
M175T175MaCgaTg55B.1.2210.000355
M175T175MaCgaTg44AY.1060.00134
M175T175MaCgaTg44AY.9.20.000147
M175T175MaCgaTg44B.1.177.570.001124
M175T175MaCgaTg44B.1.4270.000202
M175T175MaCgaTg44B.1.5090.003463
M175T175MaCgaTg44R.10.00036
M175T175MaCgaTg33AY.1140.000693
M175T175MaCgaTg33AY.116.10.000934
M175T175MaCgaTg33AY.1200.000112
M175T175MaCgaTg33AY.46.40.000494
M175T175MaCgaTg33AY.470.000093
M175T175MaCgaTg33AY.90.000203
M175T175MaCgaTg33B.1.1600.000094
M175T175MaCgaTg33B.1.2340.000396
M175T175MaCgaTg33B.1.360.000438
M175T175MaCgaTg33D.20.000225
M175T175MaCgaTg33P.1.140.000143
M175T175MaCgaTg33P.1.150.000697
M175T175MaCgaTg22AY.1000.000092
M175T175MaCgaTg22AY.1110.000366
M175T175MaCgaTg22AY.1170.000169
M175T175MaCgaTg22AY.29.10.000441
M175T175MaCgaTg22AY.4.20.000043
M175T175MaCgaTg22AY.4.2.10.000298
M175T175MaCgaTg22AY.450.000243
M175T175MaCgaTg22AY.460.000208
M175T175MaCgaTg22AY.620.000871
M175T175MaCgaTg22B.1.1.1920.004619
M175T175MaCgaTg22B.1.1.3110.000716
M175T175MaCgaTg22B.1.1.3550.030769
M175T175MaCgaTg22B.1.177.810.000379
M175T175MaCgaTg22B.1.2580.000133
M175T175MaCgaTg22B.1.351.20.000605
M175T175MaCgaTg22B.1.36.100.009569
M175T175MaCgaTg22B.1.6120.005305
M175T175MaCgaTg22B.1.6200.001892
M175T175MaCgaTg22B.1.6210.000177
M175T175MaCgaTg22C.350.001548
M175T175MaCgaTg22C.36.30.001134
M175T175MaCgaTg11A0.000387
M175T175MaCgaTg11A.20.000662
M175T175MaCgaTg11AE.80.000489
M175T175MaCgaTg11AY.1010.00049
M175T175MaCgaTg11AY.1210.000135
M175T175MaCgaTg11AY.130.000161
M175T175MaCgaTg11AY.150.002222
M175T175MaCgaTg11AY.220.002092
M175T175MaCgaTg11AY.230.00007
M175T175MaCgaTg11AY.240.000431
M175T175MaCgaTg11AY.340.000097
M175T175MaCgaTg11AY.360.000148
M175T175MaCgaTg11AY.4.50.000107
M175T175MaCgaTg11AY.5.20.002463
M175T175MaCgaTg11AY.510.000909
M175T175MaCgaTg11AY.600.000938
M175T175MaCgaTg11AY.640.000595
M175T175MaCgaTg11AY.650.000533
M175T175MaCgaTg11AY.690.000187
M175T175MaCgaTg11AY.70.000196
M175T175MaCgaTg11AY.75.10.00018
M175T175MaCgaTg11AY.840.000437
M175T175MaCgaTg11AY.910.00073
M175T175MaCgaTg11AY.930.000273
M175T175MaCgaTg11B.1.1.100.001115
M175T175MaCgaTg11B.1.1.1610.003534
M175T175MaCgaTg11B.1.1.1740.003378
M175T175MaCgaTg11B.1.1.2200.001859
M175T175MaCgaTg11B.1.1.2560.013699
M175T175MaCgaTg11B.1.1.2680.014925
M175T175MaCgaTg11B.1.1.280.000311
M175T175MaCgaTg11B.1.1.2840.000107
M175T175MaCgaTg11B.1.1.330.000421
M175T175MaCgaTg11B.1.1.3560.008547
M175T175MaCgaTg11B.1.1.3690.000446
M175T175MaCgaTg11B.1.1.4190.007407
M175T175MaCgaTg11B.1.1.4200.001006
M175T175MaCgaTg11B.1.1.4620.008621
M175T175MaCgaTg11B.1.1.4640.001473
M175T175MaCgaTg11B.1.1.4810.071429
M175T175MaCgaTg11B.1.1.5250.005464
M175T175MaCgaTg11B.1.1.700.000341
M175T175MaCgaTg11B.1.1.710.006061
M175T175MaCgaTg11B.1.1.80.003584
M175T175MaCgaTg11B.1.177.160.000664
M175T175MaCgaTg11B.1.177.320.00135
M175T175MaCgaTg11B.1.177.40.000211
M175T175MaCgaTg11B.1.177.460.000918
M175T175MaCgaTg11B.1.177.520.001757
M175T175MaCgaTg11B.1.177.620.001192
M175T175MaCgaTg11B.1.177.650.000665
M175T175MaCgaTg11B.1.177.830.001481
M175T175MaCgaTg11B.1.2010.005682
M175T175MaCgaTg11B.1.2060.000816
M175T175MaCgaTg11B.1.2430.00007
M175T175MaCgaTg11B.1.258.170.000104
M175T175MaCgaTg11B.1.2650.001271
M175T175MaCgaTg11B.1.2790.000514
M175T175MaCgaTg11B.1.3380.008621
M175T175MaCgaTg11B.1.36.170.000494
M175T175MaCgaTg11B.1.3610.001289
M175T175MaCgaTg11B.1.3620.001541
M175T175MaCgaTg11B.1.3690.000285
M175T175MaCgaTg11B.1.4040.001302
M175T175MaCgaTg11B.1.4330.003195
M175T175MaCgaTg11B.1.5160.001957
M175T175MaCgaTg11B.1.5170.000427
M175T175MaCgaTg11B.1.5510.00129
M175T175MaCgaTg11B.1.5880.00091
M175T175MaCgaTg11B.1.6090.000479
M175T175MaCgaTg11B.1.617.10.000129
M175T175MaCgaTg11B.1.6280.000352
M175T175MaCgaTg11B.1.910.002075
M175T175MaCgaTg11B.280.003279
M175T175MaCgaTg11B.30.000831
M175T175MaCgaTg11B.3.10.001658
M175T175MaCgaTg11B.390.002331
M175T175MaCgaTg11B.40.002208
M175T175MaCgaTg11P.1.130.000898
M175T175MaCgaTg11P.1.40.000977
M175T175MaCgaTg11P.1.60.001946
M175T175MaCgaTg11P.30.001595
M175T175MaCgaTg11Q.20.000613
M175T175MaCgaTg11Q.80.000165
M175T175MaCgaTg11W.10.008696

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

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