CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = S4S

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M4S4SsyntcCtcT152214220.93429726532-26534
M4S4SsyntcCtcA1522760.049934326532-26534
M4S4SsyntcCtcG1522240.015768726532-26534

Details of the mutation S4S within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M4S4StcCtcT14221522All0.000272
M4S4StcCtcA761522All0.000015
M4S4StcCtcG241522All0.000005
M4S4StcCtcT278282AY.200.010805
M4S4StcCtcG4282AY.200.000155
M4S4StcCtcT214217B.1.1.70.000192
M4S4StcCtcA3217B.1.1.70.000003
M4S4StcCtcT149149B.1.2430.010368
M4S4StcCtcT7979B.1.10.001433
M4S4StcCtcA3667B.1.617.20.000136
M4S4StcCtcT3167B.1.617.20.000117
M4S4StcCtcT5064AY.40.000078
M4S4StcCtcG1164AY.40.000017
M4S4StcCtcA364AY.40.000005
M4S4StcCtcT6363AY.440.000383
M4S4StcCtcT6363B.1.1.4041
M4S4StcCtcT5152B.1.5260.001199
M4S4StcCtcA152B.1.5260.000024
M4S4StcCtcT4444B.10.000403
M4S4StcCtcT3636B.1.4710.098361
M4S4StcCtcT2929B.1.1770.000382
M4S4StcCtcT2828L.30.099291
M4S4StcCtcT2727B.1.20.000238
M4S4StcCtcT2323AY.30.000229
M4S4StcCtcT1617AY.1030.000099
M4S4StcCtcG117AY.1030.000006
M4S4StcCtcT1416B.1.2580.000932
M4S4StcCtcA216B.1.2580.000133
M4S4StcCtcT915AY.430.00004
M4S4StcCtcG415AY.430.000018
M4S4StcCtcA215AY.430.000009
M4S4StcCtcA912AY.1000.000414
M4S4StcCtcT312AY.1000.000138
M4S4StcCtcT1112AY.39.10.000436
M4S4StcCtcG112AY.39.10.00004
M4S4StcCtcT1212B.1.3510.000357
M4S4StcCtcT910AY.260.000255
M4S4StcCtcA110AY.260.000028
M4S4StcCtcT88B.1.177.860.001468
M4S4StcCtcT77AY.250.000042
M4S4StcCtcT77B.1.1.5190.000278
M4S4StcCtcT67B.1.5960.000523
M4S4StcCtcA17B.1.5960.000087
M4S4StcCtcA66AY.320.003195
M4S4StcCtcT56AY.540.000477
M4S4StcCtcA16AY.540.000095
M4S4StcCtcT66AY.920.001724
M4S4StcCtcT66B0.000767
M4S4StcCtcT66B.1.1600.000187
M4S4StcCtcT66P.1.150.001394
M4S4StcCtcT55C.370.00058
M4S4StcCtcT44AY.1020.000106
M4S4StcCtcT44AY.1100.000451
M4S4StcCtcT44AY.1190.000141
M4S4StcCtcA34AY.46.60.000217
M4S4StcCtcT14AY.46.60.000072
M4S4StcCtcT44AY.610.000419
M4S4StcCtcT44B.1.1.4640.005891
M4S4StcCtcT34P.10.000047
M4S4StcCtcG14P.10.000016
M4S4StcCtcT33AY.290.000047
M4S4StcCtcT33AY.420.000121
M4S4StcCtcT33AY.60.000123
M4S4StcCtcT33B.1.1.1690.054545
M4S4StcCtcT33B.1.177.200.004552
M4S4StcCtcT33B.1.258.110.001189
M4S4StcCtcA33B.1.5250.000339
M4S4StcCtcT120.055556
M4S4StcCtcG120.055556
M4S4StcCtcT12AY.1200.000037
M4S4StcCtcG12AY.1200.000037
M4S4StcCtcT22AY.1210.000271
M4S4StcCtcT22AY.390.000049
M4S4StcCtcT22AY.4.20.000043
M4S4StcCtcT22AY.9.20.000073
M4S4StcCtcT22B.1.1.2140.000111
M4S4StcCtcT22B.1.1.280.000622
M4S4StcCtcT22B.1.1.2940.002532
M4S4StcCtcT22B.1.1.330.000842
M4S4StcCtcA22B.1.1.470.010695
M4S4StcCtcT22B.1.177.530.004785
M4S4StcCtcT22B.1.177.80.001505
M4S4StcCtcT22B.1.2060.001631
M4S4StcCtcT22B.1.2100.004264
M4S4StcCtcT22B.1.2340.000264
M4S4StcCtcT22B.1.466.20.000782
M4S4StcCtcT22B.1.5170.000854
M4S4StcCtcT12B.1.617.10.000129
M4S4StcCtcA12B.1.617.10.000129
M4S4StcCtcT22P.1.140.000096
M4S4StcCtcT11AU.10.001266
M4S4StcCtcA11AY.1160.000287
M4S4StcCtcT11AY.140.000088
M4S4StcCtcT11AY.160.00038
M4S4StcCtcT11AY.29.10.000221
M4S4StcCtcT11AY.3.10.000085
M4S4StcCtcT11AY.330.000067
M4S4StcCtcT11AY.4.10.000737
M4S4StcCtcT11AY.4.50.000107
M4S4StcCtcT11AY.400.000964
M4S4StcCtcT11AY.450.000122
M4S4StcCtcT11AY.470.000031
M4S4StcCtcT11AY.690.000187
M4S4StcCtcT11AY.740.000116
M4S4StcCtcT11AY.750.000056
M4S4StcCtcT11AY.850.000427
M4S4StcCtcT11AY.9.10.000084
M4S4StcCtcT11AY.930.000273
M4S4StcCtcT11AY.980.000079
M4S4StcCtcA11AY.98.10.000048
M4S4StcCtcT11AY.99.20.000092
M4S4StcCtcT11B.1.1.100.001115
M4S4StcCtcT11B.1.1.1170.009709
M4S4StcCtcT11B.1.1.1740.003378
M4S4StcCtcT11B.1.1.2220.000204
M4S4StcCtcT11B.1.1.4060.006494
M4S4StcCtcT11B.1.160.310.008065
M4S4StcCtcT11B.1.177.650.000665
M4S4StcCtcT11B.1.177.810.000189
M4S4StcCtcT11B.1.2210.000071
M4S4StcCtcT11B.1.2230.002778
M4S4StcCtcT11B.1.258.170.000104
M4S4StcCtcT11B.1.30.002618
M4S4StcCtcT11B.1.3260.007576
M4S4StcCtcT11B.1.36.290.000517
M4S4StcCtcT11B.1.3690.000285
M4S4StcCtcT11B.1.4290.000024
M4S4StcCtcT11B.1.5270.003704
M4S4StcCtcT11B.1.5510.00129
M4S4StcCtcT11B.1.5900.004545
M4S4StcCtcT11B.1.6090.000479
M4S4StcCtcT11B.1.6190.000871
M4S4StcCtcT11B.1.621.10.000506
M4S4StcCtcT11B.1.6370.000073
M4S4StcCtcT11B.1.780.008547
M4S4StcCtcT11Q.80.000165