CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 41 | N41N | syn | aaC | aaT | 18263 | 18263 | 1 | 26643-26645 |
Details of the mutation N41N within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 41 | N41N | aaC | aaT | 18263 | 18263 | All | 0.003493 |
M | 41 | N41N | aaC | aaT | 3902 | 3902 | B.1.351 | 0.115993 |
M | 41 | N41N | aaC | aaT | 1677 | 1677 | B.1.617.2 | 0.006315 |
M | 41 | N41N | aaC | aaT | 1642 | 1642 | B.1.351.5 | 0.984412 |
M | 41 | N41N | aaC | aaT | 1542 | 1542 | B.1.1.7 | 0.00138 |
M | 41 | N41N | aaC | aaT | 1050 | 1050 | AY.4 | 0.001634 |
M | 41 | N41N | aaC | aaT | 770 | 770 | B.1.177 | 0.010139 |
M | 41 | N41N | aaC | aaT | 733 | 733 | AY.43 | 0.003248 |
M | 41 | N41N | aaC | aaT | 644 | 644 | AY.25 | 0.003874 |
M | 41 | N41N | aaC | aaT | 632 | 632 | Q.2 | 0.38773 |
M | 41 | N41N | aaC | aaT | 553 | 553 | P.1.17.1 | 0.483815 |
M | 41 | N41N | aaC | aaT | 499 | 499 | AY.103 | 0.003098 |
M | 41 | N41N | aaC | aaT | 304 | 304 | B.1.2 | 0.002677 |
M | 41 | N41N | aaC | aaT | 291 | 291 | AY.44 | 0.001771 |
M | 41 | N41N | aaC | aaT | 224 | 224 | P.2 | 0.041807 |
M | 41 | N41N | aaC | aaT | 187 | 187 | AY.7 | 0.036652 |
M | 41 | N41N | aaC | aaT | 181 | 181 | B.1.1.301 | 0.213443 |
M | 41 | N41N | aaC | aaT | 173 | 173 | B.1.1.348 | 0.137739 |
M | 41 | N41N | aaC | aaT | 169 | 169 | AY.3 | 0.001681 |
M | 41 | N41N | aaC | aaT | 156 | 156 | B.1 | 0.001429 |
M | 41 | N41N | aaC | aaT | 128 | 128 | AY.46 | 0.013322 |
M | 41 | N41N | aaC | aaT | 112 | 112 | P.1 | 0.001764 |
M | 41 | N41N | aaC | aaT | 111 | 111 | B.1.526 | 0.002609 |
M | 41 | N41N | aaC | aaT | 102 | 102 | AY.39 | 0.002521 |
M | 41 | N41N | aaC | aaT | 97 | 97 | B.1.1 | 0.00176 |
M | 41 | N41N | aaC | aaT | 95 | 95 | B.1.582 | 0.046614 |
M | 41 | N41N | aaC | aaT | 76 | 76 | B.1.523 | 0.186275 |
M | 41 | N41N | aaC | aaT | 65 | 65 | B.1.428.3 | 0.833333 |
M | 41 | N41N | aaC | aaT | 63 | 63 | B.1.429 | 0.001482 |
M | 41 | N41N | aaC | aaT | 50 | 50 | AY.80 | 0.056433 |
M | 41 | N41N | aaC | aaT | 47 | 47 | AY.46.6 | 0.003394 |
M | 41 | N41N | aaC | aaT | 46 | 46 | AY.102 | 0.00122 |
M | 41 | N41N | aaC | aaT | 45 | 45 | B.1.596 | 0.003921 |
M | 41 | N41N | aaC | aaT | 45 | 45 | C.37 | 0.005223 |
M | 41 | N41N | aaC | aaT | 42 | 42 | B.1.1.50 | 0.028513 |
M | 41 | N41N | aaC | aaT | 37 | 37 | AY.29 | 0.000584 |
M | 41 | N41N | aaC | aaT | 37 | 37 | AY.4.2 | 0.000802 |
M | 41 | N41N | aaC | aaT | 37 | 37 | AY.54 | 0.003528 |
M | 41 | N41N | aaC | aaT | 36 | 36 | AY.99 | 0.037775 |
M | 41 | N41N | aaC | aaT | 35 | 35 | AY.5 | 0.000723 |
M | 41 | N41N | aaC | aaT | 32 | 32 | B.1.147 | 0.024187 |
M | 41 | N41N | aaC | aaT | 31 | 31 | B.1.160 | 0.000967 |
M | 41 | N41N | aaC | aaT | 31 | 31 | B.1.36.22 | 0.03744 |
M | 41 | N41N | aaC | aaT | 29 | 29 | AY.117 | 0.002451 |
M | 41 | N41N | aaC | aaT | 29 | 29 | AY.20 | 0.001127 |
M | 41 | N41N | aaC | aaT | 28 | 28 | AY.4.2.1 | 0.004172 |
M | 41 | N41N | aaC | aaT | 28 | 28 | AY.47 | 0.000871 |
M | 41 | N41N | aaC | aaT | 28 | 28 | B.1.1.486 | 0.044164 |
M | 41 | N41N | aaC | aaT | 28 | 28 | B.1.1.519 | 0.001112 |
M | 41 | N41N | aaC | aaT | 26 | 26 | AY.119 | 0.000918 |
M | 41 | N41N | aaC | aaT | 26 | 26 | B.1.214.2 | 0.015588 |
M | 41 | N41N | aaC | aaT | 25 | 25 | AY.100 | 0.00115 |
M | 41 | N41N | aaC | aaT | 25 | 25 | AY.3.1 | 0.002131 |
M | 41 | N41N | aaC | aaT | 25 | 25 | B.1.1.33 | 0.010522 |
M | 41 | N41N | aaC | aaT | 24 | 24 | B.1.177.4 | 0.005065 |
M | 41 | N41N | aaC | aaT | 24 | 24 | B.1.595.4 | 0.175182 |
M | 41 | N41N | aaC | aaT | 22 | 22 | AY.120 | 0.000818 |
M | 41 | N41N | aaC | aaT | 22 | 22 | B.1.427 | 0.001111 |
M | 41 | N41N | aaC | aaT | 21 | 21 | B.1.428.2 | 0.7 |
M | 41 | N41N | aaC | aaT | 20 | 20 | B.1.234 | 0.002639 |
M | 41 | N41N | aaC | aaT | 20 | 20 | B.1.595 | 0.005219 |
M | 41 | N41N | aaC | aaT | 19 | 19 | AY.26 | 0.000538 |
M | 41 | N41N | aaC | aaT | 18 | 18 | AY.12 | 0.005689 |
M | 41 | N41N | aaC | aaT | 18 | 18 | AY.98.1 | 0.000872 |
M | 41 | N41N | aaC | aaT | 17 | 17 | AY.11 | 0.022758 |
M | 41 | N41N | aaC | aaT | 17 | 17 | AY.75 | 0.000952 |
M | 41 | N41N | aaC | aaT | 16 | 16 | AY.46.4 | 0.002632 |
M | 41 | N41N | aaC | aaT | 16 | 16 | AY.99.2 | 0.001475 |
M | 41 | N41N | aaC | aaT | 16 | 16 | B.1.1.28 | 0.00498 |
M | 41 | N41N | aaC | aaT | 16 | 16 | B.1.1.70 | 0.005457 |
M | 41 | N41N | aaC | aaT | 15 | 15 | AY.33 | 0.001002 |
M | 41 | N41N | aaC | aaT | 15 | 15 | B.1.438.1 | 0.001609 |
M | 41 | N41N | aaC | aaT | 15 | 15 | B.1.637 | 0.001096 |
M | 41 | N41N | aaC | aaT | 14 | 14 | AY.9.2 | 0.000514 |
M | 41 | N41N | aaC | aaT | 14 | 14 | B.1.177.60 | 0.003058 |
M | 41 | N41N | aaC | aaT | 14 | 14 | B.1.258 | 0.000932 |
M | 41 | N41N | aaC | aaT | 13 | 13 | B.1.177.54 | 0.007884 |
M | 41 | N41N | aaC | aaT | 12 | 12 | AY.23 | 0.000837 |
M | 41 | N41N | aaC | aaT | 12 | 12 | B.1.240 | 0.002587 |
M | 41 | N41N | aaC | aaT | 12 | 12 | B.1.509 | 0.01039 |
M | 41 | N41N | aaC | aaT | 11 | 11 | AY.45 | 0.001339 |
M | 41 | N41N | aaC | aaT | 11 | 11 | AY.84 | 0.004812 |
M | 41 | N41N | aaC | aaT | 11 | 11 | B.1.617.1 | 0.001419 |
M | 41 | N41N | aaC | aaT | 11 | 11 | B.1.627 | 0.022222 |
M | 41 | N41N | aaC | aaT | 11 | 11 | P.1.14 | 0.000526 |
M | 41 | N41N | aaC | aaT | 10 | 10 | AY.9 | 0.000676 |
M | 41 | N41N | aaC | aaT | 10 | 10 | B.1.1.284 | 0.001074 |
M | 41 | N41N | aaC | aaT | 9 | 9 | AY.118 | 0.000564 |
M | 41 | N41N | aaC | aaT | 9 | 9 | AY.13 | 0.001449 |
M | 41 | N41N | aaC | aaT | 9 | 9 | B.1.1.434 | 0.003137 |
M | 41 | N41N | aaC | aaT | 9 | 9 | B.1.243 | 0.000626 |
M | 41 | N41N | aaC | aaT | 9 | 9 | B.1.311 | 0.002471 |
M | 41 | N41N | aaC | aaT | 9 | 9 | B.1.318 | 0.346154 |
M | 41 | N41N | aaC | aaT | 9 | 9 | B.1.396 | 0.006351 |
M | 41 | N41N | aaC | aaT | 9 | 9 | B.1.621 | 0.000797 |
M | 41 | N41N | aaC | aaT | 9 | 9 | B.1.632 | 0.060403 |
M | 41 | N41N | aaC | aaT | 8 | 8 | AY.10 | 0.00424 |
M | 41 | N41N | aaC | aaT | 8 | 8 | AY.34 | 0.000776 |
M | 41 | N41N | aaC | aaT | 8 | 8 | AY.4.5 | 0.00086 |
M | 41 | N41N | aaC | aaT | 8 | 8 | AY.42 | 0.000322 |
M | 41 | N41N | aaC | aaT | 8 | 8 | AY.70 | 0.001668 |
M | 41 | N41N | aaC | aaT | 8 | 8 | AY.79 | 0.009685 |
M | 41 | N41N | aaC | aaT | 8 | 8 | B.1.1.1 | 0.002614 |
M | 41 | N41N | aaC | aaT | 8 | 8 | B.1.177.72 | 0.027119 |
M | 41 | N41N | aaC | aaT | 8 | 8 | B.1.177.86 | 0.001468 |
M | 41 | N41N | aaC | aaT | 8 | 8 | B.1.281 | 0.173913 |
M | 41 | N41N | aaC | aaT | 8 | 8 | B.1.370 | 0.064 |
M | 41 | N41N | aaC | aaT | 8 | 8 | B.1.408 | 0.02952 |
M | 41 | N41N | aaC | aaT | 7 | 7 | AY.116 | 0.002007 |
M | 41 | N41N | aaC | aaT | 7 | 7 | AY.92 | 0.002011 |
M | 41 | N41N | aaC | aaT | 7 | 7 | AY.95 | 0.005327 |
M | 41 | N41N | aaC | aaT | 7 | 7 | B.1.1.214 | 0.000388 |
M | 41 | N41N | aaC | aaT | 7 | 7 | B.1.258.17 | 0.000728 |
M | 41 | N41N | aaC | aaT | 7 | 7 | B.1.36 | 0.001021 |
M | 41 | N41N | aaC | aaT | 6 | 6 | AY.113 | 0.000854 |
M | 41 | N41N | aaC | aaT | 6 | 6 | AY.46.2 | 0.003812 |
M | 41 | N41N | aaC | aaT | 6 | 6 | AY.9.1 | 0.000502 |
M | 41 | N41N | aaC | aaT | 6 | 6 | B.1.1.25 | 0.003411 |
M | 41 | N41N | aaC | aaT | 6 | 6 | B.1.1.416 | 0.00543 |
M | 41 | N41N | aaC | aaT | 6 | 6 | B.1.1.63 | 0.002315 |
M | 41 | N41N | aaC | aaT | 6 | 6 | B.1.416.1 | 0.009375 |
M | 41 | N41N | aaC | aaT | 6 | 6 | B.1.524 | 0.008439 |
M | 41 | N41N | aaC | aaT | 6 | 6 | B.1.525 | 0.000679 |
M | 41 | N41N | aaC | aaT | 6 | 6 | B.1.568 | 0.006667 |
M | 41 | N41N | aaC | aaT | 6 | 6 | P.1.16 | 0.002245 |
M | 41 | N41N | aaC | aaT | 5 | 5 | AY.108 | 0.005513 |
M | 41 | N41N | aaC | aaT | 5 | 5 | AY.32 | 0.002662 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.1.306 | 0.002192 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.1.397 | 0.011261 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.1.518 | 0.031646 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.221 | 0.000355 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.258.11 | 0.001982 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.400 | 0.002145 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.466.2 | 0.001956 |
M | 41 | N41N | aaC | aaT | 5 | 5 | B.1.8 | 0.009862 |
M | 41 | N41N | aaC | aaT | 5 | 5 | P.1.17 | 0.000809 |
M | 41 | N41N | aaC | aaT | 5 | 5 | P.1.7 | 0.001596 |
M | 41 | N41N | aaC | aaT | 4 | 4 | AD.2 | 0.000876 |
M | 41 | N41N | aaC | aaT | 4 | 4 | AY.1 | 0.001583 |
M | 41 | N41N | aaC | aaT | 4 | 4 | AY.38 | 0.001997 |
M | 41 | N41N | aaC | aaT | 4 | 4 | AY.5.4 | 0.001107 |
M | 41 | N41N | aaC | aaT | 4 | 4 | AY.65 | 0.002132 |
M | 41 | N41N | aaC | aaT | 4 | 4 | AY.98 | 0.000316 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.1.291 | 0.00297 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.1.354 | 0.017544 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.1.369 | 0.001785 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.1.37 | 0.000771 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.177.17 | 0.003284 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.177.21 | 0.000306 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.232 | 0.002149 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.36.29 | 0.002069 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.36.8 | 0.004 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.433 | 0.01278 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.470 | 0.005618 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.530 | 0.028571 |
M | 41 | N41N | aaC | aaT | 4 | 4 | B.1.634 | 0.013699 |
M | 41 | N41N | aaC | aaT | 4 | 4 | P.1.15 | 0.000929 |
M | 41 | N41N | aaC | aaT | 4 | 4 | Q.8 | 0.00066 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.110 | 0.000338 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.120.2 | 0.003856 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.14 | 0.000264 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.27 | 0.000194 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.39.1 | 0.000119 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.40 | 0.002893 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.53 | 0.000863 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.6 | 0.000123 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.61 | 0.000314 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.75.1 | 0.000541 |
M | 41 | N41N | aaC | aaT | 3 | 3 | AY.91 | 0.002191 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B | 0.000383 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.1.170 | 0.003741 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.1.317 | 0.001235 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.1.333 | 0.003229 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.1.39 | 0.001529 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.1.417 | 0.008108 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.177.16 | 0.001993 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.206 | 0.002447 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.351.3 | 0.002629 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.36.17 | 0.001482 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.369 | 0.000856 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.517 | 0.001281 |
M | 41 | N41N | aaC | aaT | 3 | 3 | B.1.597 | 0.013889 |
M | 41 | N41N | aaC | aaT | 3 | 3 | P.1.12 | 0.001452 |
M | 41 | N41N | aaC | aaT | 3 | 3 | Q.1 | 0.000379 |
M | 41 | N41N | aaC | aaT | 2 | 2 | A | 0.000774 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.16.1 | 0.00094 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.29.1 | 0.000441 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.4.4 | 0.000818 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.5.1 | 0.007519 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.5.3 | 0.000675 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.62 | 0.000871 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.63 | 0.000774 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.8 | 0.001212 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.82 | 0.002714 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.85 | 0.000854 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.89 | 0.009804 |
M | 41 | N41N | aaC | aaT | 2 | 2 | AY.93 | 0.000546 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.216 | 0.001781 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.222 | 0.000408 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.230 | 0.018349 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.277 | 0.001517 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.318 | 0.000604 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.322 | 0.017544 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.375 | 0.02381 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.1.409 | 0.005666 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.128 | 0.001271 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.177.75 | 0.002081 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.177.8 | 0.001505 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.177.81 | 0.000379 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.22 | 0.002635 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.239 | 0.002442 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.324 | 0.00321 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.340 | 0.008584 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.346 | 0.002621 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.349 | 0.00143 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.36.16 | 0.002849 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.36.31 | 0.003503 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.361 | 0.002577 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.381 | 0.015625 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.416 | 0.002538 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.428 | 0.002041 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.497 | 0.00063 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.505 | 0.008772 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.564 | 0.000852 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.565 | 0.001621 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.1.621.1 | 0.001012 |
M | 41 | N41N | aaC | aaT | 2 | 2 | B.6.6 | 0.001778 |
M | 41 | N41N | aaC | aaT | 2 | 2 | C.36.3 | 0.001134 |
M | 41 | N41N | aaC | aaT | 2 | 2 | P.1.13 | 0.001797 |
M | 41 | N41N | aaC | aaT | 2 | 2 | P.1.2 | 0.002312 |
M | 41 | N41N | aaC | aaT | 2 | 2 | P.1.4 | 0.001953 |
M | 41 | N41N | aaC | aaT | 1 | 1 | 0.055556 | |
M | 41 | N41N | aaC | aaT | 1 | 1 | A.1 | 0.000282 |
M | 41 | N41N | aaC | aaT | 1 | 1 | A.2.5.1 | 0.004808 |
M | 41 | N41N | aaC | aaT | 1 | 1 | A.23 | 0.010526 |
M | 41 | N41N | aaC | aaT | 1 | 1 | A.28 | 0.002646 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AE.8 | 0.000489 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AM.4 | 0.003571 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.104 | 0.001984 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.105 | 0.000643 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.106 | 0.000335 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.120.1 | 0.000321 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.121 | 0.000135 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.19 | 0.00114 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.24 | 0.000431 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.34.1 | 0.00051 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.35 | 0.000233 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.36 | 0.000148 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.41 | 0.000294 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.46.1 | 0.001027 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.46.3 | 0.000934 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.46.5 | 0.000198 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.52 | 0.000814 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.55 | 0.000917 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.59 | 0.00053 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.60 | 0.000938 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.68 | 0.000274 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.69 | 0.000187 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.7.1 | 0.000113 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.7.2 | 0.000559 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.71 | 0.000475 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.74 | 0.000116 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.87 | 0.000833 |
M | 41 | N41N | aaC | aaT | 1 | 1 | AY.88 | 0.000884 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.128 | 0.007092 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.161 | 0.003534 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.198 | 0.001468 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.210 | 0.005714 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.231 | 0.003096 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.309 | 0.005848 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.311 | 0.000358 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.398 | 0.003226 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.4 | 0.002976 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.407 | 0.041667 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.458 | 0.041667 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.464 | 0.001473 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.47 | 0.005348 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.51 | 0.001718 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.526 | 0.003546 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.1.57 | 0.011494 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.104 | 0.00369 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.111 | 0.001175 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.116 | 0.011628 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.126 | 0.001276 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.160.16 | 0.000929 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.160.28 | 0.002924 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.12 | 0.000152 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.18 | 0.00116 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.23 | 0.003236 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.35 | 0.000691 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.44 | 0.000519 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.51 | 0.004566 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.52 | 0.001757 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.56 | 0.000668 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.73 | 0.000566 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.77 | 0.000726 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.177.79 | 0.002342 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.212 | 0.016667 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.214 | 0.003663 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.218 | 0.005155 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.221.3 | 0.000833 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.236 | 0.002053 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.240.2 | 0.030303 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.241 | 0.000812 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.252 | 0.006623 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.264 | 0.012346 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.265 | 0.001271 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.298 | 0.002114 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.320 | 0.001245 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.336 | 0.002439 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.351.2 | 0.000303 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.36.18 | 0.00042 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.36.27 | 0.000763 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.36.36 | 0.000602 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.36.39 | 0.002217 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.36.9 | 0.003215 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.366 | 0.004878 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.375 | 0.00082 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.391 | 0.001127 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.409 | 0.000781 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.44 | 0.008333 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.471 | 0.002732 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.531 | 0.083333 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.538 | 0.008065 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.544 | 0.006024 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.545 | 0.014493 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.561 | 0.000397 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.580 | 0.004065 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.590 | 0.004545 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.605 | 0.005952 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.606 | 0.006024 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.609 | 0.000479 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.620 | 0.000946 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.628 | 0.000352 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.636 | 0.006711 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.1.93 | 0.000934 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.3 | 0.000831 |
M | 41 | N41N | aaC | aaT | 1 | 1 | B.40 | 0.000364 |
M | 41 | N41N | aaC | aaT | 1 | 1 | C.30 | 0.001727 |
M | 41 | N41N | aaC | aaT | 1 | 1 | C.36 | 0.000911 |
M | 41 | N41N | aaC | aaT | 1 | 1 | C.37.1 | 0.002618 |
M | 41 | N41N | aaC | aaT | 1 | 1 | C.4 | 0.01 |
M | 41 | N41N | aaC | aaT | 1 | 1 | C.6 | 0.037037 |
M | 41 | N41N | aaC | aaT | 1 | 1 | D.2 | 0.000075 |
M | 41 | N41N | aaC | aaT | 1 | 1 | N.9 | 0.005952 |
M | 41 | N41N | aaC | aaT | 1 | 1 | P.1.1 | 0.000318 |
M | 41 | N41N | aaC | aaT | 1 | 1 | P.1.10 | 0.000269 |
M | 41 | N41N | aaC | aaT | 1 | 1 | P.3 | 0.001595 |
M | 41 | N41N | aaC | aaT | 1 | 1 | Q.3 | 0.000145 |
M | 41 | N41N | aaC | aaT | 1 | 1 | R.1 | 0.00009 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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