CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = L56L

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M56L56LsynctGctT834269600.83433226688-26690
M56L56LsynCtgTtg83429370.11232326688-26690
M56L56LsynctGctA83423720.044593626688-26690
M56L56LsynctGctC8342720.0086310226688-26690
M56L56LsynCtGTtA834210.00011987526688-26690

Details of the mutation L56L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M56L56LctGctT69608342All0.001331
M56L56LCtgTtg9378342All0.000179
M56L56LctGctA3728342All0.000071
M56L56LctGctC728342All0.000014
M56L56LCtGTtA18342All0
M56L56LctGctT10051005B.1.5640.428024
M56L56LctGctT639793B.1.1.70.000572
M56L56LCtgTtg78793B.1.1.70.00007
M56L56LctGctA67793B.1.1.70.00006
M56L56LctGctC9793B.1.1.70.000008
M56L56LctGctT472472B.1.3690.134626
M56L56LctGctT269427B.1.617.20.001013
M56L56LCtgTtg149427B.1.617.20.000561
M56L56LctGctA8427B.1.617.20.00003
M56L56LctGctC1427B.1.617.20.000004
M56L56LctGctT393393AY.690.073362
M56L56LctGctT392393B.1.2400.084501
M56L56LCtgTtg1393B.1.2400.000216
M56L56LctGctT201347AY.430.000891
M56L56LCtgTtg135347AY.430.000598
M56L56LctGctA9347AY.430.00004
M56L56LctGctC2347AY.430.000009
M56L56LctGctT195323B.1.20.001717
M56L56LCtgTtg110323B.1.20.000969
M56L56LctGctA18323B.1.20.000158
M56L56LctGctT204276AY.40.000318
M56L56LCtgTtg59276AY.40.000092
M56L56LctGctA11276AY.40.000017
M56L56LctGctC2276AY.40.000003
M56L56LctGctT239248B.10.002189
M56L56LctGctA6248B.10.000055
M56L56LCtgTtg2248B.10.000018
M56L56LctGctC1248B.10.000009
M56L56LctGctT211226B.1.1770.002778
M56L56LctGctA15226B.1.1770.000198
M56L56LctGctT212213B.1.2430.014752
M56L56LCtgTtg1213B.1.2430.00007
M56L56LCtgTtg155209B.1.3510.004608
M56L56LctGctT51209B.1.3510.001516
M56L56LctGctC3209B.1.3510.000089
M56L56LctGctT174200AY.1030.00108
M56L56LctGctC19200AY.1030.000118
M56L56LCtgTtg4200AY.1030.000025
M56L56LctGctA3200AY.1030.000019
M56L56LctGctT174195AY.50.003593
M56L56LctGctA11195AY.50.000227
M56L56LctGctC7195AY.50.000145
M56L56LCtgTtg3195AY.50.000062
M56L56LctGctT143148B.1.2580.009516
M56L56LctGctC4148B.1.2580.000266
M56L56LctGctA1148B.1.2580.000067
M56L56LctGctT76133AY.250.000457
M56L56LctGctA55133AY.250.000331
M56L56LCtgTtg2133AY.250.000012
M56L56LctGctT70130P.10.001103
M56L56LCtgTtg58130P.10.000914
M56L56LctGctA2130P.10.000032
M56L56LctGctT126127B.1.617.10.01625
M56L56LCtgTtg1127B.1.617.10.000129
M56L56LctGctT109109A.23.10.076761
M56L56LctGctT8388B.1.10.001506
M56L56LCtgTtg388B.1.10.000054
M56L56LCtGTtA188B.1.10.000018
M56L56LctGctC188B.1.10.000018
M56L56LctGctT8287AY.440.000499
M56L56LctGctA487AY.440.000024
M56L56LCtgTtg187AY.440.000006
M56L56LctGctT3579AY.30.000348
M56L56LCtgTtg2979AY.30.000288
M56L56LctGctA1579AY.30.000149
M56L56LctGctT7777AK.10.974684
M56L56LctGctT4652AY.1020.00122
M56L56LCtgTtg452AY.1020.000106
M56L56LctGctA252AY.1020.000053
M56L56LCtgTtg4250AY.260.001189
M56L56LctGctT850AY.260.000226
M56L56LctGctA2041AY.290.000315
M56L56LctGctT1541AY.290.000237
M56L56LctGctC541AY.290.000079
M56L56LCtgTtg141AY.290.000016
M56L56LctGctT3939AY.340.003782
M56L56LctGctT3838AY.98.10.00184
M56L56LctGctT3538B.1.4290.000824
M56L56LCtgTtg238B.1.4290.000047
M56L56LctGctA138B.1.4290.000024
M56L56LctGctT3737B.1.369.11
M56L56LctGctT3636B.1.3810.28125
M56L56LctGctT3535AY.530.010063
M56L56LctGctT3232B.1.5090.027706
M56L56LctGctT3232B.1.6370.002338
M56L56LctGctT2029AY.390.000494
M56L56LCtgTtg729AY.390.000173
M56L56LctGctA229AY.390.000049
M56L56LctGctT2527B.1.5260.000588
M56L56LctGctA227B.1.5260.000047
M56L56LctGctT2525B.1.360.003648
M56L56LctGctT2424AE.60.923077
M56L56LctGctT1424AY.1000.000644
M56L56LCtgTtg824AY.1000.000368
M56L56LctGctA224AY.1000.000092
M56L56LctGctA2224AY.7.10.002479
M56L56LCtgTtg224AY.7.10.000225
M56L56LctGctT2424B.1.258.170.002495
M56L56LctGctT2323B.1.1.2940.029114
M56L56LctGctA2222AA.30.594595
M56L56LctGctT1722AY.230.001186
M56L56LCtgTtg422AY.230.000279
M56L56LctGctA122AY.230.00007
M56L56LctGctT1622AY.460.001665
M56L56LCtgTtg522AY.460.00052
M56L56LctGctA122AY.460.000104
M56L56LctGctT2022B.1.1.5190.000794
M56L56LCtgTtg222B.1.1.5190.000079
M56L56LctGctT2222B.1.36.290.011381
M56L56LctGctT2121B.1.5750.006371
M56L56LctGctT1520AY.1190.00053
M56L56LCtgTtg420AY.1190.000141
M56L56LctGctA120AY.1190.000035
M56L56LCtgTtg1020AY.470.000311
M56L56LctGctT820AY.470.000249
M56L56LctGctA220AY.470.000062
M56L56LctGctT2020B.1.2340.002639
M56L56LctGctT1618AY.4.20.000347
M56L56LctGctA218AY.4.20.000043
M56L56LctGctT1818AY.420.000724
M56L56LctGctT1316AY.1010.006376
M56L56LctGctA316AY.1010.001471
M56L56LctGctT1316AY.200.000505
M56L56LctGctA316AY.200.000117
M56L56LctGctT1616B.1.1260.020408
M56L56LctGctT1215AY.116.10.003737
M56L56LCtgTtg315AY.116.10.000934
M56L56LctGctT1515AY.1210.00203
M56L56LctGctT1515AY.330.001002
M56L56LctGctA1315AY.590.006886
M56L56LctGctT215AY.590.001059
M56L56LctGctT1515B.1.1.280.004669
M56L56LctGctT1515B.1.4970.004721
M56L56LctGctT1515C.340.555556
M56L56LctGctT1214AY.60.000494
M56L56LCtgTtg214AY.60.000082
M56L56LctGctT913AY.1130.001282
M56L56LCtgTtg413AY.1130.00057
M56L56LctGctT1013AY.1200.000372
M56L56LCtgTtg213AY.1200.000074
M56L56LctGctA113AY.1200.000037
M56L56LctGctT1313R.10.00117
M56L56LctGctT1212AY.360.001779
M56L56LctGctT1111AY.39.10.000436
M56L56LctGctT1111AY.99.20.001014
M56L56LctGctT1111B.1.1.2190.055
M56L56LctGctT1111B.1.2210.000781
M56L56LctGctT1010B.230.02924
M56L56LctGctT1010B.280.032787
M56L56LctGctT1010P.1.140.000478
M56L56LctGctT79B.1.1600.000218
M56L56LctGctA29B.1.1600.000062
M56L56LctGctT89B.1.1890.034335
M56L56LctGctA19B.1.1890.004292
M56L56LctGctT99B.1.2320.004836
M56L56LctGctT59B.1.5960.000436
M56L56LctGctA39B.1.5960.000261
M56L56LCtgTtg19B.1.5960.000087
M56L56LctGctT99P.1.10.002859
M56L56LctGctT58AY.3.10.000426
M56L56LctGctA28AY.3.10.000171
M56L56LCtgTtg18AY.3.10.000085
M56L56LctGctT68AY.75.10.001082
M56L56LCtgTtg28AY.75.10.000361
M56L56LctGctT78AY.9.20.000257
M56L56LctGctC18AY.9.20.000037
M56L56LctGctT88B.1.1.2140.000444
M56L56LctGctT88B.1.177.260.055944
M56L56LctGctT77AY.1170.000592
M56L56LctGctT57B.1.4270.000252
M56L56LctGctC17B.1.4270.00005
M56L56LctGctA17B.1.4270.00005
M56L56LCtgTtg77B.1.5580.031963
M56L56LctGctT77P.1.70.002235
M56L56LctGctT56AY.1180.000313
M56L56LCtgTtg16AY.1180.000063
M56L56LctGctT66AY.450.00073
M56L56LctGctT66B.1.5240.008439
M56L56LctGctT66B.1.5250.000679
M56L56LctGctT66P.1.170.000971
M56L56LctGctT66P.30.009569
M56L56LctGctT55AY.280.009452
M56L56LctGctT55AY.410.00147
M56L56LctGctT55AY.46.60.000361
M56L56LctGctT45AY.9.10.000335
M56L56LCtgTtg15AY.9.10.000084
M56L56LctGctT45B0.000511
M56L56LCtgTtg15B0.000128
M56L56LctGctT55B.1.1.2220.00102
M56L56LctGctT55B.1.1.3060.002192
M56L56LctGctT55B.1.177.620.005959
M56L56LctGctC55B.1.2290.048544
M56L56LctGctA45B.1.351.20.00121
M56L56LctGctT15B.1.351.20.000303
M56L56LctGctT55B.1.36.80.005
M56L56LctGctT55B.1.6090.002397
M56L56LctGctT35B.1.6210.000266
M56L56LctGctA25B.1.6210.000177
M56L56LctGctC45P.1.130.003594
M56L56LCtgTtg15P.1.130.000898
M56L56LctGctT55Q.40.002274
M56L56LctGctA44AY.120.10.001284
M56L56LctGctT24AY.140.000176
M56L56LctGctA14AY.140.000088
M56L56LCtgTtg14AY.140.000088
M56L56LctGctT34AY.16.10.00141
M56L56LctGctA14AY.16.10.00047
M56L56LctGctT34AY.90.000203
M56L56LCtgTtg14AY.90.000068
M56L56LctGctT44AY.980.000316
M56L56LctGctT24B.1.2410.001623
M56L56LCtgTtg24B.1.2410.001623
M56L56LctGctT24C.370.000232
M56L56LctGctA14C.370.000116
M56L56LctGctC14C.370.000116
M56L56LctGctT23AY.1060.00067
M56L56LctGctC13AY.1060.000335
M56L56LctGctA33AY.20.001068
M56L56LctGctT23AY.29.10.000441
M56L56LctGctA13AY.29.10.000221
M56L56LctGctT33AY.300.001187
M56L56LctGctT33AY.380.001498
M56L56LCtgTtg23AY.4.40.000818
M56L56LctGctT13AY.4.40.000409
M56L56LctGctT33AY.4.50.000322
M56L56LctGctC23AY.570.001312
M56L56LctGctT13AY.570.000656
M56L56LctGctT23AY.620.000871
M56L56LctGctA13AY.620.000436
M56L56LctGctT23AY.740.000231
M56L56LCtgTtg13AY.740.000116
M56L56LctGctT23AY.850.000854
M56L56LctGctA13AY.850.000427
M56L56LctGctC33B.1.1.500.002037
M56L56LctGctT33B.1.1.630.001157
M56L56LctGctT33B.1.177.370.081081
M56L56LctGctT23B.1.177.70.00033
M56L56LctGctA13B.1.177.70.000165
M56L56LctGctT33B.1.2640.037037
M56L56LctGctT33B.1.5760.00272
M56L56LctGctT33B.1.5950.000783
M56L56LctGctT23C.360.001821
M56L56LctGctA13C.360.000911
M56L56LCtgTtg33P.1.120.001452
M56L56LctGctA220.111111
M56L56LctGctT22A0.000774
M56L56LctGctA22A.280.005291
M56L56LCtgTtg22AY.10.000791
M56L56LctGctT12AY.100.00053
M56L56LCtgTtg12AY.100.00053
M56L56LctGctT22AY.1110.000366
M56L56LctGctT22AY.1160.000574
M56L56LctGctT22AY.120.000632
M56L56LctGctT22AY.160.000759
M56L56LctGctA22AY.23.10.000835
M56L56LctGctT22AY.34.10.00102
M56L56LctGctT22AY.46.30.001867
M56L56LCtgTtg22AY.490.00639
M56L56LctGctT22AY.5.40.000553
M56L56LctGctT22AY.540.000191
M56L56LctGctA12AY.750.000056
M56L56LCtgTtg12AY.750.000056
M56L56LCtgTtg22AY.870.001665
M56L56LctGctT22AY.950.001522
M56L56LctGctT22B.1.1.1890.003026
M56L56LctGctT22B.1.1.1980.002937
M56L56LctGctT12B.1.1.2070.001182
M56L56LctGctA12B.1.1.2070.001182
M56L56LctGctT22B.1.1.2310.006192
M56L56LCtgTtg12B.1.1.3110.000358
M56L56LctGctT12B.1.1.3110.000358
M56L56LctGctT22B.1.1.3120.003824
M56L56LctGctT22B.1.1.3160.00185
M56L56LctGctT12B.1.1.3180.000302
M56L56LctGctA12B.1.1.3180.000302
M56L56LctGctT12B.1.1.330.000421
M56L56LctGctA12B.1.1.330.000421
M56L56LctGctT22B.1.1.390.001019
M56L56LctGctT22B.1.1.4160.00181
M56L56LctGctT22B.1.1.5170.013605
M56L56LctGctT22B.1.177.210.000153
M56L56LctGctT22B.1.177.730.001133
M56L56LctGctT22B.1.177.810.000379
M56L56LctGctT22B.1.1950.01005
M56L56LctGctT22B.1.1990.008264
M56L56LctGctT22B.1.264.10.095238
M56L56LctGctT22B.1.36.380.003284
M56L56LctGctT22B.1.3670.001585
M56L56LctGctT22B.1.3770.009132
M56L56LctGctT22B.1.438.10.000215
M56L56LctGctT12B.1.4700.001404
M56L56LctGctA12B.1.4700.001404
M56L56LctGctT22B.1.6200.001892
M56L56LctGctT22B.1.621.10.001012
M56L56LctGctT22B.550.0059
M56L56LctGctT22D.20.00015
M56L56LCtgTtg12N.50.001767
M56L56LctGctT12N.50.001767
M56L56LctGctT22Q.80.00033
M56L56LctGctT11A.10.000282
M56L56LctGctT11A.50.001923
M56L56LctGctT11AG.10.066667
M56L56LctGctT11AY.1040.001984
M56L56LctGctT11AY.1100.000113
M56L56LctGctT11AY.1140.000231
M56L56LctGctT11AY.120.20.001285
M56L56LCtgTtg11AY.220.002092
M56L56LCtgTtg11AY.240.000431
M56L56LctGctT11AY.270.000065
M56L56LCtgTtg11AY.320.000532
M56L56LctGctT11AY.4.10.000737
M56L56LctGctT11AY.46.10.001027
M56L56LctGctT11AY.46.50.000198
M56L56LctGctA11AY.5.30.000337
M56L56LctGctA11AY.520.000814
M56L56LctGctT11AY.550.000917
M56L56LCtgTtg11AY.610.000105
M56L56LctGctT11AY.650.000533
M56L56LctGctT11AY.670.000464
M56L56LctGctT11AY.680.000274
M56L56LctGctT11AY.710.000475
M56L56LctGctT11AY.790.001211
M56L56LctGctT11AY.80.000606
M56L56LCtgTtg11AY.840.000437
M56L56LctGctT11AY.920.000287
M56L56LctGctT11AY.940.000443
M56L56LctGctT11AY.99.10.001553
M56L56LctGctT11B.1.1.10.000327
M56L56LctGctT11B.1.1.100.001115
M56L56LctGctT11B.1.1.1250.010204
M56L56LctGctT11B.1.1.1570.000913
M56L56LctGctT11B.1.1.1860.003436
M56L56LctGctT11B.1.1.2160.00089
M56L56LctGctT11B.1.1.3010.001179
M56L56LctGctT11B.1.1.3040.002809
M56L56LctGctT11B.1.1.3220.008772
M56L56LctGctT11B.1.1.3260.001761
M56L56LctGctT11B.1.1.370.000193
M56L56LctGctA11B.1.1.3770.001381
M56L56LctGctT11B.1.1.4320.001266
M56L56LctGctT11B.1.1.4480.002033
M56L56LctGctT11B.1.1.700.000341
M56L56LCtgTtg11B.1.1.770.041667
M56L56LctGctA11B.1.110.30.000718
M56L56LctGctT11B.1.1310.008772
M56L56LctGctA11B.1.177.150.000631
M56L56LctGctT11B.1.177.450.000381
M56L56LctGctT11B.1.177.530.002392
M56L56LctGctT11B.1.177.60.000977
M56L56LctGctT11B.1.177.860.000183
M56L56LctGctT11B.1.1810.019608
M56L56LctGctT11B.1.2060.000816
M56L56LctGctT11B.1.2450.03125
M56L56LctGctT11B.1.2790.000514
M56L56LctGctT11B.1.2910.019231
M56L56LctGctT11B.1.2980.002114
M56L56LctGctT11B.1.30.002618
M56L56LctGctT11B.1.351.50.0006
M56L56LCtgTtg11B.1.36.390.002217
M56L56LctGctT11B.1.4110.003704
M56L56LctGctT11B.1.4160.001269
M56L56LctGctT11B.1.4200.010417
M56L56LctGctT11B.1.4320.011236
M56L56LctGctT11B.1.4480.002625
M56L56LctGctT11B.1.466.20.000391
M56L56LctGctT11B.1.4690.00361
M56L56LctGctT11B.1.4710.002732
M56L56LctGctT11B.1.5270.003704
M56L56LctGctT11B.1.5380.008065
M56L56LctGctT11B.1.5720.025
M56L56LctGctT11B.1.6050.005952
M56L56LctGctT11B.1.6120.002653
M56L56LctGctT11B.1.6180.004032
M56L56LctGctT11B.1.619.10.000641
M56L56LctGctT11B.1.6270.00202
M56L56LctGctT11B.1.88.10.004808
M56L56LctGctT11B.130.045455
M56L56LctGctT11B.30.000831
M56L56LCtgTtg11B.6.60.000889
M56L56LctGctT11C.10.002392
M56L56LctGctT11C.180.002591
M56L56LctGctT11N.90.005952
M56L56LctGctT11P.1.100.000269
M56L56LctGctT11P.1.110.010204
M56L56LctGctA11P.20.000187
M56L56LctGctT11P.50.013699
M56L56LctGctT11P.70.004367
M56L56LCtgTtg11W.40.001351