CoV-GLUE | Mutations | Mutation
Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):
ORF | CodonNum | Mut | ORF1abMut | MutType | RefCodon | MutCodon | AACount | CodonCount | CodonProp | Genome Position |
M | 138 | L138L | syn | ctC | ctT | 10357 | 10217 | 0.986483 | 26934-26936 | |
M | 138 | L138L | syn | ctC | ctA | 10357 | 118 | 0.0113933 | 26934-26936 | |
M | 138 | L138L | syn | ctC | ctG | 10357 | 22 | 0.00212417 | 26934-26936 |
Details of the mutation L138L within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):
ORF | CodonNum | Mut | RefCodon | MutCodon | CodonCount | AACount | Lineage | LineageCodonProp |
M | 138 | L138L | ctC | ctT | 10217 | 10357 | All | 0.001954 |
M | 138 | L138L | ctC | ctA | 118 | 10357 | All | 0.000023 |
M | 138 | L138L | ctC | ctG | 22 | 10357 | All | 0.000004 |
M | 138 | L138L | ctC | ctT | 3593 | 3620 | B.1.1.7 | 0.003217 |
M | 138 | L138L | ctC | ctA | 20 | 3620 | B.1.1.7 | 0.000018 |
M | 138 | L138L | ctC | ctG | 7 | 3620 | B.1.1.7 | 0.000006 |
M | 138 | L138L | ctC | ctT | 854 | 885 | B.1.617.2 | 0.003216 |
M | 138 | L138L | ctC | ctA | 31 | 885 | B.1.617.2 | 0.000117 |
M | 138 | L138L | ctC | ctT | 713 | 722 | AY.43 | 0.003159 |
M | 138 | L138L | ctC | ctA | 9 | 722 | AY.43 | 0.00004 |
M | 138 | L138L | ctC | ctT | 415 | 415 | AY.8 | 0.251515 |
M | 138 | L138L | ctC | ctT | 338 | 338 | B.1.1 | 0.006132 |
M | 138 | L138L | ctC | ctT | 320 | 320 | B.1.177.48 | 1 |
M | 138 | L138L | ctC | ctT | 313 | 315 | AY.3 | 0.003113 |
M | 138 | L138L | ctC | ctA | 2 | 315 | AY.3 | 0.00002 |
M | 138 | L138L | ctC | ctT | 274 | 281 | AY.4 | 0.000426 |
M | 138 | L138L | ctC | ctG | 4 | 281 | AY.4 | 0.000006 |
M | 138 | L138L | ctC | ctA | 3 | 281 | AY.4 | 0.000005 |
M | 138 | L138L | ctC | ctT | 215 | 218 | AY.103 | 0.001335 |
M | 138 | L138L | ctC | ctG | 2 | 218 | AY.103 | 0.000012 |
M | 138 | L138L | ctC | ctA | 1 | 218 | AY.103 | 0.000006 |
M | 138 | L138L | ctC | ctT | 124 | 132 | AY.44 | 0.000755 |
M | 138 | L138L | ctC | ctA | 8 | 132 | AY.44 | 0.000049 |
M | 138 | L138L | ctC | ctT | 113 | 114 | P.1 | 0.00178 |
M | 138 | L138L | ctC | ctG | 1 | 114 | P.1 | 0.000016 |
M | 138 | L138L | ctC | ctT | 94 | 107 | B.1.2 | 0.000828 |
M | 138 | L138L | ctC | ctA | 13 | 107 | B.1.2 | 0.000114 |
M | 138 | L138L | ctC | ctT | 102 | 102 | AY.42 | 0.004103 |
M | 138 | L138L | ctC | ctT | 101 | 102 | B.1.351 | 0.003002 |
M | 138 | L138L | ctC | ctA | 1 | 102 | B.1.351 | 0.00003 |
M | 138 | L138L | ctC | ctT | 72 | 82 | B.1 | 0.000659 |
M | 138 | L138L | ctC | ctA | 10 | 82 | B.1 | 0.000092 |
M | 138 | L138L | ctC | ctT | 81 | 81 | B.1.177 | 0.001067 |
M | 138 | L138L | ctC | ctT | 76 | 76 | AY.7.2 | 0.042506 |
M | 138 | L138L | ctC | ctT | 75 | 75 | AY.4.5 | 0.008062 |
M | 138 | L138L | ctC | ctT | 73 | 73 | AY.46.1 | 0.074949 |
M | 138 | L138L | ctC | ctT | 72 | 72 | AY.102 | 0.001909 |
M | 138 | L138L | ctC | ctT | 72 | 72 | AY.39 | 0.001779 |
M | 138 | L138L | ctC | ctT | 72 | 72 | AY.46 | 0.007494 |
M | 138 | L138L | ctC | ctT | 68 | 68 | AY.61 | 0.007125 |
M | 138 | L138L | ctC | ctT | 68 | 68 | AY.98.1 | 0.003293 |
M | 138 | L138L | ctC | ctT | 66 | 66 | AY.34 | 0.0064 |
M | 138 | L138L | ctC | ctT | 65 | 65 | B.1.1.262 | 0.984848 |
M | 138 | L138L | ctC | ctT | 61 | 61 | B.1.160 | 0.001902 |
M | 138 | L138L | ctC | ctT | 61 | 61 | B.1.177.86 | 0.011191 |
M | 138 | L138L | ctC | ctT | 49 | 56 | AY.25 | 0.000295 |
M | 138 | L138L | ctC | ctG | 5 | 56 | AY.25 | 0.00003 |
M | 138 | L138L | ctC | ctA | 2 | 56 | AY.25 | 0.000012 |
M | 138 | L138L | ctC | ctT | 55 | 55 | AY.120 | 0.002045 |
M | 138 | L138L | ctC | ctT | 55 | 55 | B.1.239 | 0.067155 |
M | 138 | L138L | ctC | ctT | 52 | 52 | AY.20 | 0.002021 |
M | 138 | L138L | ctC | ctT | 51 | 51 | AY.5.4 | 0.014112 |
M | 138 | L138L | ctC | ctT | 49 | 49 | B.1.177.73 | 0.027746 |
M | 138 | L138L | ctC | ctT | 45 | 45 | AY.116 | 0.012905 |
M | 138 | L138L | ctC | ctT | 41 | 41 | B.1.574 | 0.088172 |
M | 138 | L138L | ctC | ctT | 39 | 39 | AY.71 | 0.018527 |
M | 138 | L138L | ctC | ctT | 38 | 38 | B.1.526 | 0.000893 |
M | 138 | L138L | ctC | ctT | 34 | 34 | AY.5 | 0.000702 |
M | 138 | L138L | ctC | ctT | 34 | 34 | B.1.1.265 | 0.107256 |
M | 138 | L138L | ctC | ctT | 33 | 33 | B.1.576 | 0.029918 |
M | 138 | L138L | ctC | ctT | 32 | 32 | B.1.429 | 0.000753 |
M | 138 | L138L | ctC | ctT | 31 | 31 | AY.46.6 | 0.002238 |
M | 138 | L138L | ctC | ctT | 31 | 31 | AY.9.2 | 0.001139 |
M | 138 | L138L | ctC | ctT | 30 | 30 | B.1.1.72 | 0.909091 |
M | 138 | L138L | ctC | ctT | 30 | 30 | B.1.400 | 0.01287 |
M | 138 | L138L | ctC | ctT | 29 | 29 | AY.33 | 0.001937 |
M | 138 | L138L | ctC | ctT | 27 | 27 | AY.75.1 | 0.004868 |
M | 138 | L138L | ctC | ctT | 26 | 26 | AY.9.1 | 0.002177 |
M | 138 | L138L | ctC | ctT | 24 | 24 | B.1.427 | 0.001212 |
M | 138 | L138L | ctC | ctT | 23 | 23 | A.1 | 0.006483 |
M | 138 | L138L | ctC | ctT | 19 | 19 | B.1.1.28 | 0.005913 |
M | 138 | L138L | ctC | ctT | 19 | 19 | B.1.596 | 0.001656 |
M | 138 | L138L | ctC | ctT | 15 | 15 | AY.47 | 0.000467 |
M | 138 | L138L | ctC | ctT | 15 | 15 | P.1.1 | 0.004765 |
M | 138 | L138L | ctC | ctT | 13 | 14 | AY.26 | 0.000368 |
M | 138 | L138L | ctC | ctA | 1 | 14 | AY.26 | 0.000028 |
M | 138 | L138L | ctC | ctT | 14 | 14 | AY.4.2 | 0.000304 |
M | 138 | L138L | ctC | ctT | 14 | 14 | B.1.1.519 | 0.000556 |
M | 138 | L138L | ctC | ctT | 11 | 13 | AY.119 | 0.000388 |
M | 138 | L138L | ctC | ctA | 1 | 13 | AY.119 | 0.000035 |
M | 138 | L138L | ctC | ctG | 1 | 13 | AY.119 | 0.000035 |
M | 138 | L138L | ctC | ctT | 13 | 13 | AY.92 | 0.003735 |
M | 138 | L138L | ctC | ctT | 13 | 13 | B.1.1.39 | 0.006626 |
M | 138 | L138L | ctC | ctT | 13 | 13 | B.1.258 | 0.000865 |
M | 138 | L138L | ctC | ctT | 13 | 13 | B.1.590 | 0.059091 |
M | 138 | L138L | ctC | ctT | 13 | 13 | C.36.3 | 0.007374 |
M | 138 | L138L | ctC | ctT | 12 | 12 | AY.117 | 0.001014 |
M | 138 | L138L | ctC | ctT | 12 | 12 | AY.53 | 0.00345 |
M | 138 | L138L | ctC | ctT | 11 | 12 | B | 0.001406 |
M | 138 | L138L | ctC | ctA | 1 | 12 | B | 0.000128 |
M | 138 | L138L | ctC | ctT | 12 | 12 | B.1.443 | 0.056075 |
M | 138 | L138L | ctC | ctT | 10 | 12 | B.1.525 | 0.001132 |
M | 138 | L138L | ctC | ctG | 2 | 12 | B.1.525 | 0.000226 |
M | 138 | L138L | ctC | ctT | 11 | 11 | AY.100 | 0.000506 |
M | 138 | L138L | ctC | ctT | 10 | 11 | AY.29 | 0.000158 |
M | 138 | L138L | ctC | ctA | 1 | 11 | AY.29 | 0.000016 |
M | 138 | L138L | ctC | ctT | 11 | 11 | AY.5.3 | 0.003711 |
M | 138 | L138L | ctC | ctT | 8 | 11 | AY.84 | 0.0035 |
M | 138 | L138L | ctC | ctA | 3 | 11 | AY.84 | 0.001312 |
M | 138 | L138L | ctC | ctT | 10 | 10 | AY.45 | 0.001217 |
M | 138 | L138L | ctC | ctT | 10 | 10 | B.1.36.18 | 0.004202 |
M | 138 | L138L | ctC | ctT | 10 | 10 | P.1.14 | 0.000478 |
M | 138 | L138L | ctC | ctT | 9 | 9 | AY.106 | 0.003014 |
M | 138 | L138L | ctC | ctT | 9 | 9 | AY.23 | 0.000628 |
M | 138 | L138L | ctC | ctT | 9 | 9 | AY.68 | 0.002464 |
M | 138 | L138L | ctC | ctT | 9 | 9 | AY.70 | 0.001877 |
M | 138 | L138L | ctC | ctT | 9 | 9 | AY.75 | 0.000504 |
M | 138 | L138L | ctC | ctT | 9 | 9 | B.1.311 | 0.002471 |
M | 138 | L138L | ctC | ctT | 8 | 8 | AY.113 | 0.001139 |
M | 138 | L138L | ctC | ctT | 8 | 8 | AY.3.1 | 0.000682 |
M | 138 | L138L | ctC | ctT | 8 | 8 | AY.62 | 0.003486 |
M | 138 | L138L | ctC | ctT | 8 | 8 | AY.67 | 0.003714 |
M | 138 | L138L | ctC | ctT | 8 | 8 | AY.98 | 0.000632 |
M | 138 | L138L | ctC | ctT | 8 | 8 | B.1.1.434 | 0.002788 |
M | 138 | L138L | ctC | ctT | 4 | 7 | AY.36 | 0.000593 |
M | 138 | L138L | ctC | ctA | 3 | 7 | AY.36 | 0.000445 |
M | 138 | L138L | ctC | ctT | 7 | 7 | B.1.1.318 | 0.002112 |
M | 138 | L138L | ctC | ctT | 7 | 7 | B.1.1.63 | 0.002701 |
M | 138 | L138L | ctC | ctT | 7 | 7 | B.1.617.1 | 0.000903 |
M | 138 | L138L | ctC | ctT | 7 | 7 | P.1.16 | 0.002619 |
M | 138 | L138L | ctC | ctT | 6 | 6 | AY.111 | 0.001099 |
M | 138 | L138L | ctC | ctT | 6 | 6 | AY.39.1 | 0.000238 |
M | 138 | L138L | ctC | ctT | 6 | 6 | AY.41 | 0.001764 |
M | 138 | L138L | ctC | ctT | 6 | 6 | AY.54 | 0.000572 |
M | 138 | L138L | ctC | ctT | 6 | 6 | AY.6 | 0.000247 |
M | 138 | L138L | ctC | ctT | 6 | 6 | AY.69 | 0.00112 |
M | 138 | L138L | ctC | ctT | 6 | 6 | B.1.1.298 | 0.005172 |
M | 138 | L138L | ctC | ctT | 6 | 6 | B.1.177.57 | 0.001686 |
M | 138 | L138L | ctC | ctT | 6 | 6 | B.1.177.81 | 0.001136 |
M | 138 | L138L | ctC | ctT | 6 | 6 | B.1.221 | 0.000426 |
M | 138 | L138L | ctC | ctT | 6 | 6 | B.1.243 | 0.000418 |
M | 138 | L138L | ctC | ctT | 6 | 6 | B.1.36 | 0.000875 |
M | 138 | L138L | ctC | ctT | 6 | 6 | B.1.637 | 0.000438 |
M | 138 | L138L | ctC | ctT | 6 | 6 | Q.1 | 0.000758 |
M | 138 | L138L | ctC | ctT | 6 | 6 | R.1 | 0.00054 |
M | 138 | L138L | ctC | ctT | 5 | 5 | AY.16 | 0.001898 |
M | 138 | L138L | ctC | ctT | 5 | 5 | AY.4.2.1 | 0.000745 |
M | 138 | L138L | ctC | ctT | 5 | 5 | B.1.1.409 | 0.014164 |
M | 138 | L138L | ctC | ctT | 5 | 5 | B.1.258.17 | 0.00052 |
M | 138 | L138L | ctC | ctT | 5 | 5 | B.1.561 | 0.001985 |
M | 138 | L138L | ctC | ctT | 5 | 5 | C.37 | 0.00058 |
M | 138 | L138L | ctC | ctT | 4 | 4 | AY.24 | 0.001724 |
M | 138 | L138L | ctC | ctT | 3 | 4 | AY.27 | 0.000194 |
M | 138 | L138L | ctC | ctA | 1 | 4 | AY.27 | 0.000065 |
M | 138 | L138L | ctC | ctA | 2 | 4 | AY.34.1 | 0.00102 |
M | 138 | L138L | ctC | ctT | 2 | 4 | AY.34.1 | 0.00102 |
M | 138 | L138L | ctC | ctT | 4 | 4 | AY.38 | 0.001997 |
M | 138 | L138L | ctC | ctT | 4 | 4 | AY.51 | 0.003636 |
M | 138 | L138L | ctC | ctT | 4 | 4 | B.1.279 | 0.002054 |
M | 138 | L138L | ctC | ctT | 4 | 4 | B.1.517 | 0.001708 |
M | 138 | L138L | ctC | ctT | 4 | 4 | B.1.536 | 0.095238 |
M | 138 | L138L | ctC | ctT | 4 | 4 | B.1.595 | 0.001044 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.12 | 0.000948 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.13 | 0.000483 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.16.1 | 0.00141 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.2 | 0.001068 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.29.1 | 0.000662 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.58 | 0.002722 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.59 | 0.001589 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.65 | 0.001599 |
M | 138 | L138L | ctC | ctT | 3 | 3 | AY.7 | 0.000588 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.1.161 | 0.010601 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.1.204 | 0.009119 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.1.222 | 0.000612 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.1.432 | 0.003797 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.1.526 | 0.010638 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.177.32 | 0.004049 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.36.29 | 0.001552 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.396 | 0.002117 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.575 | 0.00091 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.578 | 0.053571 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.1.621 | 0.000266 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.26 | 0.044118 |
M | 138 | L138L | ctC | ctT | 3 | 3 | B.40 | 0.001093 |
M | 138 | L138L | ctC | ctT | 3 | 3 | P.1.10 | 0.000808 |
M | 138 | L138L | ctC | ctT | 3 | 3 | P.1.12 | 0.001452 |
M | 138 | L138L | ctC | ctT | 2 | 2 | AY.14 | 0.000176 |
M | 138 | L138L | ctC | ctT | 2 | 2 | AY.32 | 0.001065 |
M | 138 | L138L | ctC | ctA | 1 | 2 | AY.52 | 0.000814 |
M | 138 | L138L | ctC | ctT | 1 | 2 | AY.52 | 0.000814 |
M | 138 | L138L | ctC | ctT | 2 | 2 | AY.56 | 0.00321 |
M | 138 | L138L | ctC | ctT | 2 | 2 | AY.73 | 0.001331 |
M | 138 | L138L | ctC | ctA | 1 | 2 | AY.9 | 0.000068 |
M | 138 | L138L | ctC | ctT | 1 | 2 | AY.9 | 0.000068 |
M | 138 | L138L | ctC | ctT | 2 | 2 | AY.99.2 | 0.000184 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.1.1 | 0.000653 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.1.10 | 0.00223 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.1.214 | 0.000111 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.1.37 | 0.000386 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.1.8 | 0.007168 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.177.12 | 0.000303 |
M | 138 | L138L | ctC | ctA | 1 | 2 | B.1.177.15 | 0.000631 |
M | 138 | L138L | ctC | ctT | 1 | 2 | B.1.177.15 | 0.000631 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.177.4 | 0.000422 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.177.5 | 0.002484 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.177.75 | 0.002081 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.36.19 | 0.018519 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.404 | 0.002604 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.428 | 0.002041 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.466.2 | 0.000782 |
M | 138 | L138L | ctC | ctT | 2 | 2 | B.1.597 | 0.009259 |
M | 138 | L138L | ctC | ctT | 2 | 2 | C.13 | 0.051282 |
M | 138 | L138L | ctC | ctT | 2 | 2 | C.37.1 | 0.005236 |
M | 138 | L138L | ctC | ctT | 2 | 2 | D.2 | 0.00015 |
M | 138 | L138L | ctC | ctA | 1 | 1 | A | 0.000387 |
M | 138 | L138L | ctC | ctT | 1 | 1 | A.2 | 0.000662 |
M | 138 | L138L | ctC | ctT | 1 | 1 | A.2.4 | 0.003367 |
M | 138 | L138L | ctC | ctT | 1 | 1 | A.2.5 | 0.000499 |
M | 138 | L138L | ctC | ctT | 1 | 1 | A.23.1 | 0.000704 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AA.8 | 0.022222 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.101 | 0.00049 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.108 | 0.001103 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.118 | 0.000063 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.120.2.1 | 0.000498 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.21 | 0.001898 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.23.1 | 0.000417 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.48 | 0.000465 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.57 | 0.000656 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.63 | 0.000387 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.7.1 | 0.000113 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.76 | 0.004831 |
M | 138 | L138L | ctC | ctT | 1 | 1 | AY.97 | 0.001701 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.159 | 0.004673 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.170 | 0.001247 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.219 | 0.005 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.25 | 0.000569 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.306 | 0.000438 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.370 | 0.012658 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.40 | 0.034483 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.486 | 0.001577 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.512 | 0.028571 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.516 | 0.066667 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.524 | 0.020833 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.528 | 0.004808 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.70 | 0.000341 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.1.74 | 0.00431 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.108 | 0.005814 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.157 | 0.002985 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.160.28 | 0.002924 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.160.30 | 0.002976 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.177.21 | 0.000076 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.177.51 | 0.004566 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.206 | 0.000816 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.214.2 | 0.0006 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.22 | 0.001318 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.234 | 0.000132 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.237 | 0.004975 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.240 | 0.000216 |
M | 138 | L138L | ctC | ctA | 1 | 1 | B.1.301 | 0.005917 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.36.10 | 0.004785 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.36.31 | 0.001751 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.36.35 | 0.002604 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.36.36 | 0.000602 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.36.8 | 0.001 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.369 | 0.000285 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.408 | 0.00369 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.409 | 0.000781 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.411 | 0.003704 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.416 | 0.001269 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.428.2 | 0.033333 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.448 | 0.002625 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.453 | 0.003236 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.459 | 0.004082 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.462 | 0.007246 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.470 | 0.001404 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.509 | 0.000866 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.538 | 0.008065 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.542 | 0.03125 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.543 | 0.01 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.564 | 0.000426 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.565 | 0.00081 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.575.1 | 0.002439 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.580 | 0.004065 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.581 | 0.009434 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.582 | 0.000491 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.588 | 0.00091 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.609 | 0.000479 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.623 | 0.000536 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.630 | 0.005236 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.1.631 | 0.003367 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.23 | 0.002924 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.3 | 0.000831 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.3.1 | 0.001658 |
M | 138 | L138L | ctC | ctT | 1 | 1 | B.39 | 0.002331 |
M | 138 | L138L | ctC | ctT | 1 | 1 | C.1.2 | 0.004255 |
M | 138 | L138L | ctC | ctT | 1 | 1 | C.36 | 0.000911 |
M | 138 | L138L | ctC | ctT | 1 | 1 | D.3 | 0.005917 |
M | 138 | L138L | ctC | ctT | 1 | 1 | N.3 | 0.005814 |
M | 138 | L138L | ctC | ctT | 1 | 1 | N.5 | 0.001767 |
M | 138 | L138L | ctC | ctT | 1 | 1 | N.6 | 0.007092 |
M | 138 | L138L | ctC | ctT | 1 | 1 | P.1.15 | 0.000232 |
M | 138 | L138L | ctC | ctT | 1 | 1 | P.1.17 | 0.000162 |
M | 138 | L138L | ctC | ctT | 1 | 1 | P.1.2 | 0.001156 |
M | 138 | L138L | ctC | ctT | 1 | 1 | P.1.7 | 0.000319 |
M | 138 | L138L | ctC | ctT | 1 | 1 | P.2 | 0.000187 |
M | 138 | L138L | ctC | ctT | 1 | 1 | Q.8 | 0.000165 |
CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk
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