CoV-GLUEGenomeCountriesLineagesMutationsInsertionsDeletionsUpdated:

CoV-GLUE | Mutations | Mutation

CoV-GLUE Mutation: ORF = M : Mut = I73M

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORFCodonNumMutORF1abMutMutTypeRefCodonMutCodonAACountCodonCountCodonPropGenome Position
M73I73MnonsynatAatG249249126739-26741

Details of the mutation I73M within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORFCodonNumMutRefCodonMutCodonCodonCountAACountLineageLineageCodonProp
M73I73MatAatG249249All0.000048
M73I73MatAatG144144B.1.1.4130.993103
M73I73MatAatG1818AY.40.000028
M73I73MatAatG1414B.1.1.70.000013
M73I73MatAatG1313B.1.10.000236
M73I73MatAatG1212AY.30.000119
M73I73MatAatG1212B.1.6370.000877
M73I73MatAatG66B.1.1770.000079
M73I73MatAatG55P.1.140.000239
M73I73MatAatG44B.10.000037
M73I73MatAatG33B.1.1.2220.000612
M73I73MatAatG22AY.1030.000012
M73I73MatAatG22AY.1180.000125
M73I73MatAatG22B.1.2600.006689
M73I73MatAatG11AY.1000.000046
M73I73MatAatG11AY.1040.001984
M73I73MatAatG11AY.440.000006
M73I73MatAatG11B0.000128
M73I73MatAatG11B.1.1.1740.003378
M73I73MatAatG11B.1.1.3260.001761
M73I73MatAatG11B.1.1.4320.001266
M73I73MatAatG11B.1.1.990.02381
M73I73MatAatG11B.1.20.000009
M73I73MatAatG11B.1.360.000146
M73I73MatAatG11B.1.36.290.000517
M73I73MatAatG11B.1.5330.009615

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.