CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : Mut = H155Y

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	155	H155Y		nonsyn	Cat	Tat	4208	4208	1	26985-26987

Details of the mutation H155Y within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	155	H155Y	Cat	Tat	4208	4208	All	0.000805
M	155	H155Y	Cat	Tat	766	766	B.1.1.7	0.000686
M	155	H155Y	Cat	Tat	592	592	B.1.351	0.017598
M	155	H155Y	Cat	Tat	314	314	B.1.160	0.009793
M	155	H155Y	Cat	Tat	307	307	B.1.1.519	0.012191
M	155	H155Y	Cat	Tat	267	267	B.1.258	0.017768
M	155	H155Y	Cat	Tat	227	227	B.1.1.434	0.079122
M	155	H155Y	Cat	Tat	170	170	B.1.2	0.001497
M	155	H155Y	Cat	Tat	162	162	AY.9.2	0.00595
M	155	H155Y	Cat	Tat	136	136	AY.4	0.000212
M	155	H155Y	Cat	Tat	102	102	B.1.632	0.684564
M	155	H155Y	Cat	Tat	87	87	AY.43	0.000385
M	155	H155Y	Cat	Tat	74	74	B.1.617.2	0.000279
M	155	H155Y	Cat	Tat	57	57	B.1	0.000522
M	155	H155Y	Cat	Tat	54	54	B.1.177	0.000711
M	155	H155Y	Cat	Tat	44	44	AY.103	0.000273
M	155	H155Y	Cat	Tat	42	42	AY.25	0.000253
M	155	H155Y	Cat	Tat	40	40	B.1.429	0.000941
M	155	H155Y	Cat	Tat	36	36	AY.44	0.000219
M	155	H155Y	Cat	Tat	32	32	AY.5	0.000661
M	155	H155Y	Cat	Tat	31	31	B.1.1.310	0.469697
M	155	H155Y	Cat	Tat	30	30	AY.6	0.001234
M	155	H155Y	Cat	Tat	28	28	B.1.526	0.000658
M	155	H155Y	Cat	Tat	27	27	B.1.1	0.00049
M	155	H155Y	Cat	Tat	27	27	B.1.146	0.114407
M	155	H155Y	Cat	Tat	23	23	B.1.400	0.009867
M	155	H155Y	Cat	Tat	22	22	P.1	0.000347
M	155	H155Y	Cat	Tat	21	21	AY.26	0.000595
M	155	H155Y	Cat	Tat	18	18	AY.102	0.000477
M	155	H155Y	Cat	Tat	18	18	B.1.258.17	0.001871
M	155	H155Y	Cat	Tat	15	15	AY.29	0.000237
M	155	H155Y	Cat	Tat	12	12	AY.39	0.000297
M	155	H155Y	Cat	Tat	11	11	B.1.232	0.005911
M	155	H155Y	Cat	Tat	11	11	B.1.427	0.000555
M	155	H155Y	Cat	Tat	10	10	AY.20	0.000389
M	155	H155Y	Cat	Tat	10	10	B.1.1.214	0.000555
M	155	H155Y	Cat	Tat	10	10	B.1.1.284	0.001074
M	155	H155Y	Cat	Tat	9	9	B.1.177.6	0.008789
M	155	H155Y	Cat	Tat	9	9	B.1.596	0.000784
M	155	H155Y	Cat	Tat	8	8	AY.3	0.00008
M	155	H155Y	Cat	Tat	8	8	AY.46	0.000833
M	155	H155Y	Cat	Tat	8	8	B.1.1.305	0.030888
M	155	H155Y	Cat	Tat	8	8	B.1.214.2	0.004796
M	155	H155Y	Cat	Tat	8	8	B.1.466.2	0.00313
M	155	H155Y	Cat	Tat	8	8	C.37	0.000929
M	155	H155Y	Cat	Tat	8	8	Z.1	0.023121
M	155	H155Y	Cat	Tat	7	7	B.1.221	0.000497
M	155	H155Y	Cat	Tat	7	7	B.1.564	0.002981
M	155	H155Y	Cat	Tat	6	6	B.1.1.291	0.004454
M	155	H155Y	Cat	Tat	5	5	AY.14	0.00044
M	155	H155Y	Cat	Tat	5	5	AY.27	0.000324
M	155	H155Y	Cat	Tat	5	5	AY.48	0.002326
M	155	H155Y	Cat	Tat	5	5	P.1.7	0.001596
M	155	H155Y	Cat	Tat	4	4	AD.2	0.000876
M	155	H155Y	Cat	Tat	4	4	AY.119	0.000141
M	155	H155Y	Cat	Tat	4	4	AY.4.2	0.000087
M	155	H155Y	Cat	Tat	4	4	AY.98	0.000316
M	155	H155Y	Cat	Tat	4	4	B.1.177.81	0.000757
M	155	H155Y	Cat	Tat	4	4	B.1.218	0.020619
M	155	H155Y	Cat	Tat	4	4	B.1.36.29	0.002069
M	155	H155Y	Cat	Tat	4	4	B.1.564.1	0.006309
M	155	H155Y	Cat	Tat	4	4	B.1.575	0.001214
M	155	H155Y	Cat	Tat	4	4	B.1.577	0.002749
M	155	H155Y	Cat	Tat	4	4	B.1.637	0.000292
M	155	H155Y	Cat	Tat	4	4	B.1.9.5	0.022727
M	155	H155Y	Cat	Tat	4	4	C.35	0.003096
M	155	H155Y	Cat	Tat	3	3	A.1	0.000846
M	155	H155Y	Cat	Tat	3	3	AY.116.1	0.000934
M	155	H155Y	Cat	Tat	3	3	AY.117	0.000254
M	155	H155Y	Cat	Tat	3	3	AY.4.5	0.000322
M	155	H155Y	Cat	Tat	3	3	AY.42	0.000121
M	155	H155Y	Cat	Tat	3	3	AY.47	0.000093
M	155	H155Y	Cat	Tat	3	3	AY.70	0.000626
M	155	H155Y	Cat	Tat	3	3	AY.9.1	0.000251
M	155	H155Y	Cat	Tat	3	3	B.1.1.189	0.004539
M	155	H155Y	Cat	Tat	3	3	B.1.1.220	0.005576
M	155	H155Y	Cat	Tat	3	3	B.1.1.28	0.000934
M	155	H155Y	Cat	Tat	3	3	B.1.1.33	0.001263
M	155	H155Y	Cat	Tat	3	3	B.1.177.10	0.002634
M	155	H155Y	Cat	Tat	3	3	B.1.177.65	0.001996
M	155	H155Y	Cat	Tat	3	3	B.1.234	0.000396
M	155	H155Y	Cat	Tat	3	3	B.1.243	0.000209
M	155	H155Y	Cat	Tat	3	3	B.1.36.18	0.001261
M	155	H155Y	Cat	Tat	3	3	B.1.509	0.002597
M	155	H155Y	Cat	Tat	3	3	B.1.524	0.004219
M	155	H155Y	Cat	Tat	3	3	B.1.621	0.000266
M	155	H155Y	Cat	Tat	3	3	P.1.17	0.000485
M	155	H155Y	Cat	Tat	2	2	AY.100	0.000092
M	155	H155Y	Cat	Tat	2	2	AY.11	0.002677
M	155	H155Y	Cat	Tat	2	2	AY.33	0.000134
M	155	H155Y	Cat	Tat	2	2	AY.39.1	0.000079
M	155	H155Y	Cat	Tat	2	2	AY.46.5	0.000397
M	155	H155Y	Cat	Tat	2	2	AY.5.3	0.000675
M	155	H155Y	Cat	Tat	2	2	AY.54	0.000191
M	155	H155Y	Cat	Tat	2	2	AY.64	0.00119
M	155	H155Y	Cat	Tat	2	2	AY.75	0.000112
M	155	H155Y	Cat	Tat	2	2	AY.9	0.000135
M	155	H155Y	Cat	Tat	2	2	B	0.000256
M	155	H155Y	Cat	Tat	2	2	B.1.1.161	0.007067
M	155	H155Y	Cat	Tat	2	2	B.1.1.306	0.000877
M	155	H155Y	Cat	Tat	2	2	B.1.1.317	0.000823
M	155	H155Y	Cat	Tat	2	2	B.1.1.47	0.010695
M	155	H155Y	Cat	Tat	2	2	B.1.1.522	0.034483
M	155	H155Y	Cat	Tat	2	2	B.1.1.70	0.000682
M	155	H155Y	Cat	Tat	2	2	B.1.177.77	0.001452
M	155	H155Y	Cat	Tat	2	2	B.1.177.82	0.000955
M	155	H155Y	Cat	Tat	2	2	B.1.177.86	0.000367
M	155	H155Y	Cat	Tat	2	2	B.1.351.1	0.076923
M	155	H155Y	Cat	Tat	2	2	B.1.616	0.04878
M	155	H155Y	Cat	Tat	2	2	B.1.620	0.001892
M	155	H155Y	Cat	Tat	2	2	B.1.623	0.001073
M	155	H155Y	Cat	Tat	2	2	B.29	0.007018
M	155	H155Y	Cat	Tat	2	2	P.1.15	0.000465
M	155	H155Y	Cat	Tat	2	2	P.2	0.000373
M	155	H155Y	Cat	Tat	2	2	Q.1	0.000253
M	155	H155Y	Cat	Tat	2	2	Q.7	0.002222
M	155	H155Y	Cat	Tat	2	2	R.1	0.00018
M	155	H155Y	Cat	Tat	1	1	A.2.5.2	0.001572
M	155	H155Y	Cat	Tat	1	1	A.23.1	0.000704
M	155	H155Y	Cat	Tat	1	1	AY.113	0.000142
M	155	H155Y	Cat	Tat	1	1	AY.118	0.000063
M	155	H155Y	Cat	Tat	1	1	AY.12	0.000316
M	155	H155Y	Cat	Tat	1	1	AY.120.2.1	0.000498
M	155	H155Y	Cat	Tat	1	1	AY.2	0.000356
M	155	H155Y	Cat	Tat	1	1	AY.29.1	0.000221
M	155	H155Y	Cat	Tat	1	1	AY.3.1	0.000085
M	155	H155Y	Cat	Tat	1	1	AY.4.1	0.000737
M	155	H155Y	Cat	Tat	1	1	AY.4.3	0.000842
M	155	H155Y	Cat	Tat	1	1	AY.45	0.000122
M	155	H155Y	Cat	Tat	1	1	AY.46.4	0.000165
M	155	H155Y	Cat	Tat	1	1	AY.46.6	0.000072
M	155	H155Y	Cat	Tat	1	1	AY.5.4	0.000277
M	155	H155Y	Cat	Tat	1	1	AY.55	0.000917
M	155	H155Y	Cat	Tat	1	1	AY.56	0.001605
M	155	H155Y	Cat	Tat	1	1	AY.61	0.000105
M	155	H155Y	Cat	Tat	1	1	AY.62	0.000436
M	155	H155Y	Cat	Tat	1	1	AY.68	0.000274
M	155	H155Y	Cat	Tat	1	1	AY.7	0.000196
M	155	H155Y	Cat	Tat	1	1	AY.75.1	0.00018
M	155	H155Y	Cat	Tat	1	1	AY.79	0.001211
M	155	H155Y	Cat	Tat	1	1	AY.80	0.001129
M	155	H155Y	Cat	Tat	1	1	AY.92	0.000287
M	155	H155Y	Cat	Tat	1	1	B.1.1.10	0.001115
M	155	H155Y	Cat	Tat	1	1	B.1.1.110	0.090909
M	155	H155Y	Cat	Tat	1	1	B.1.1.153	0.001095
M	155	H155Y	Cat	Tat	1	1	B.1.1.176	0.000439
M	155	H155Y	Cat	Tat	1	1	B.1.1.205	0.003717
M	155	H155Y	Cat	Tat	1	1	B.1.1.222	0.000204
M	155	H155Y	Cat	Tat	1	1	B.1.1.26	0.005236
M	155	H155Y	Cat	Tat	1	1	B.1.1.294	0.001266
M	155	H155Y	Cat	Tat	1	1	B.1.1.311	0.000358
M	155	H155Y	Cat	Tat	1	1	B.1.1.322	0.008772
M	155	H155Y	Cat	Tat	1	1	B.1.1.334	0.016393
M	155	H155Y	Cat	Tat	1	1	B.1.1.348	0.000796
M	155	H155Y	Cat	Tat	1	1	B.1.1.354	0.004386
M	155	H155Y	Cat	Tat	1	1	B.1.1.409	0.002833
M	155	H155Y	Cat	Tat	1	1	B.1.1.416	0.000905
M	155	H155Y	Cat	Tat	1	1	B.1.1.420	0.001006
M	155	H155Y	Cat	Tat	1	1	B.1.1.433	0.001425
M	155	H155Y	Cat	Tat	1	1	B.1.1.448	0.002033
M	155	H155Y	Cat	Tat	1	1	B.1.1.523	0.001563
M	155	H155Y	Cat	Tat	1	1	B.1.110.3	0.000718
M	155	H155Y	Cat	Tat	1	1	B.1.124	0.007812
M	155	H155Y	Cat	Tat	1	1	B.1.149	0.003425
M	155	H155Y	Cat	Tat	1	1	B.1.170	0.00431
M	155	H155Y	Cat	Tat	1	1	B.1.177.21	0.000076
M	155	H155Y	Cat	Tat	1	1	B.1.177.39	0.015385
M	155	H155Y	Cat	Tat	1	1	B.1.177.4	0.000211
M	155	H155Y	Cat	Tat	1	1	B.1.177.57	0.000281
M	155	H155Y	Cat	Tat	1	1	B.1.177.7	0.000165
M	155	H155Y	Cat	Tat	1	1	B.1.177.8	0.000752
M	155	H155Y	Cat	Tat	1	1	B.1.177.87	0.000728
M	155	H155Y	Cat	Tat	1	1	B.1.195	0.005025
M	155	H155Y	Cat	Tat	1	1	B.1.258.14	0.00098
M	155	H155Y	Cat	Tat	1	1	B.1.258.21	0.007752
M	155	H155Y	Cat	Tat	1	1	B.1.258.22	0.002667
M	155	H155Y	Cat	Tat	1	1	B.1.305	0.002151
M	155	H155Y	Cat	Tat	1	1	B.1.336	0.002439
M	155	H155Y	Cat	Tat	1	1	B.1.351.2	0.000303
M	155	H155Y	Cat	Tat	1	1	B.1.351.5	0.0006
M	155	H155Y	Cat	Tat	1	1	B.1.36	0.000146
M	155	H155Y	Cat	Tat	1	1	B.1.36.1	0.00114
M	155	H155Y	Cat	Tat	1	1	B.1.36.17	0.000494
M	155	H155Y	Cat	Tat	1	1	B.1.36.26	0.002857
M	155	H155Y	Cat	Tat	1	1	B.1.391	0.001127
M	155	H155Y	Cat	Tat	1	1	B.1.393	0.028571
M	155	H155Y	Cat	Tat	1	1	B.1.525	0.000113
M	155	H155Y	Cat	Tat	1	1	B.1.561	0.000397
M	155	H155Y	Cat	Tat	1	1	B.1.563	0.016949
M	155	H155Y	Cat	Tat	1	1	B.1.576	0.000907
M	155	H155Y	Cat	Tat	1	1	B.1.580	0.004065
M	155	H155Y	Cat	Tat	1	1	B.1.588	0.00091
M	155	H155Y	Cat	Tat	1	1	B.1.617.1	0.000129
M	155	H155Y	Cat	Tat	1	1	B.3.1	0.001658
M	155	H155Y	Cat	Tat	1	1	B.40	0.000364
M	155	H155Y	Cat	Tat	1	1	B.52	0.010101
M	155	H155Y	Cat	Tat	1	1	C.1.2	0.004255
M	155	H155Y	Cat	Tat	1	1	C.16	0.00106
M	155	H155Y	Cat	Tat	1	1	N.5	0.001767
M	155	H155Y	Cat	Tat	1	1	P.1.14	0.000048
M	155	H155Y	Cat	Tat	1	1	P.1.17.1	0.000875
M	155	H155Y	Cat	Tat	1	1	Q.4	0.000455
M	155	H155Y	Cat	Tat	1	1	Q.8	0.000165

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.