CoV-GLUE Mutation

CoV-GLUE Mutation: ORF = M : Mut = H155H

Details of the codons used for the mutation across all lineages (CodonProp is the proportion each codon is used for this AA mutation):

ORF	CodonNum	Mut	ORF1abMut	MutType	RefCodon	MutCodon	AACount	CodonCount	CodonProp	Genome Position
M	155	H155H		syn	caT	caC	3706	3706	1	26985-26987

Details of the mutation H155H within lineages (LineageCodonProp is the proportion the codon is observed at, at this particular site, on each lineage):

ORF	CodonNum	Mut	RefCodon	MutCodon	CodonCount	AACount	Lineage	LineageCodonProp
M	155	H155H	caT	caC	3706	3706	All	0.000709
M	155	H155H	caT	caC	2587	2587	AY.29	0.040806
M	155	H155H	caT	caC	265	265	B.1.617.2	0.000998
M	155	H155H	caT	caC	128	128	AY.98.1	0.006199
M	155	H155H	caT	caC	121	121	P.1.14	0.005784
M	155	H155H	caT	caC	94	94	B.1.1.7	0.000084
M	155	H155H	caT	caC	88	88	AY.111	0.016117
M	155	H155H	caT	caC	87	87	AY.75	0.004874
M	155	H155H	caT	caC	49	49	AY.43	0.000217
M	155	H155H	caT	caC	41	41	AY.4	0.000064
M	155	H155H	caT	caC	27	27	AY.29.1	0.005954
M	155	H155H	caT	caC	22	22	AY.25	0.000132
M	155	H155H	caT	caC	19	19	B.1.1.519	0.000755
M	155	H155H	caT	caC	8	8	B.1	0.000073
M	155	H155H	caT	caC	8	8	C.36	0.007286
M	155	H155H	caT	caC	7	7	AY.103	0.000043
M	155	H155H	caT	caC	7	7	AY.36	0.001037
M	155	H155H	caT	caC	7	7	B.1.2	0.000062
M	155	H155H	caT	caC	6	6	AY.120	0.000223
M	155	H155H	caT	caC	6	6	AY.14	0.000528
M	155	H155H	caT	caC	6	6	P.1	0.000095
M	155	H155H	caT	caC	5	5	AY.117	0.000423
M	155	H155H	caT	caC	5	5	B.1.177	0.000066
M	155	H155H	caT	caC	4	4	AY.3	0.00004
M	155	H155H	caT	caC	4	4	AY.38	0.001997
M	155	H155H	caT	caC	3	3	AY.26	0.000085
M	155	H155H	caT	caC	3	3	AY.45	0.000365
M	155	H155H	caT	caC	3	3	AY.9.1	0.000251
M	155	H155H	caT	caC	3	3	B.1.1.413	0.02069
M	155	H155H	caT	caC	3	3	B.1.351	0.000089
M	155	H155H	caT	caC	3	3	B.1.36.18	0.001261
M	155	H155H	caT	caC	3	3	B.1.369	0.000856
M	155	H155H	caT	caC	3	3	P.1.17	0.000485
M	155	H155H	caT	caC	3	3	Q.8	0.000495
M	155	H155H	caT	caC	2	2	AY.42	0.00008
M	155	H155H	caT	caC	2	2	AY.44	0.000012
M	155	H155H	caT	caC	2	2	AY.5	0.000041
M	155	H155H	caT	caC	2	2	AY.61	0.00021
M	155	H155H	caT	caC	2	2	AY.66	0.002139
M	155	H155H	caT	caC	2	2	AY.79	0.002421
M	155	H155H	caT	caC	2	2	AY.93	0.000546
M	155	H155H	caT	caC	2	2	B.1.1.222	0.000408
M	155	H155H	caT	caC	2	2	B.1.1.25	0.001137
M	155	H155H	caT	caC	2	2	B.1.1.33	0.000842
M	155	H155H	caT	caC	2	2	B.1.265	0.002541
M	155	H155H	caT	caC	2	2	B.1.36.21	0.00432
M	155	H155H	caT	caC	2	2	B.1.362	0.003082
M	155	H155H	caT	caC	2	2	B.1.596	0.000174
M	155	H155H	caT	caC	2	2	C.37	0.000232
M	155	H155H	caT	caC	2	2	P.2	0.000373
M	155	H155H	caT	caC	2	2	Q.3	0.00029
M	155	H155H	caT	caC	1	1	AY.1	0.000396
M	155	H155H	caT	caC	1	1	AY.100	0.000046
M	155	H155H	caT	caC	1	1	AY.102	0.000027
M	155	H155H	caT	caC	1	1	AY.104	0.001984
M	155	H155H	caT	caC	1	1	AY.110	0.000113
M	155	H155H	caT	caC	1	1	AY.118	0.000063
M	155	H155H	caT	caC	1	1	AY.119	0.000035
M	155	H155H	caT	caC	1	1	AY.19	0.00114
M	155	H155H	caT	caC	1	1	AY.23	0.00007
M	155	H155H	caT	caC	1	1	AY.27	0.000065
M	155	H155H	caT	caC	1	1	AY.32	0.000532
M	155	H155H	caT	caC	1	1	AY.33	0.000067
M	155	H155H	caT	caC	1	1	AY.34	0.000097
M	155	H155H	caT	caC	1	1	AY.39	0.000025
M	155	H155H	caT	caC	1	1	AY.46	0.000104
M	155	H155H	caT	caC	1	1	AY.47	0.000031
M	155	H155H	caT	caC	1	1	AY.6	0.000041
M	155	H155H	caT	caC	1	1	AY.74	0.000116
M	155	H155H	caT	caC	1	1	AY.84	0.000437
M	155	H155H	caT	caC	1	1	AY.91	0.00073
M	155	H155H	caT	caC	1	1	AY.98	0.000079
M	155	H155H	caT	caC	1	1	B.1.1	0.000018
M	155	H155H	caT	caC	1	1	B.1.1.214	0.000055
M	155	H155H	caT	caC	1	1	B.1.1.277	0.000759
M	155	H155H	caT	caC	1	1	B.1.1.432	0.001266
M	155	H155H	caT	caC	1	1	B.1.111	0.001175
M	155	H155H	caT	caC	1	1	B.1.160	0.000031
M	155	H155H	caT	caC	1	1	B.1.177.15	0.000631
M	155	H155H	caT	caC	1	1	B.1.177.81	0.000189
M	155	H155H	caT	caC	1	1	B.1.221	0.000071
M	155	H155H	caT	caC	1	1	B.1.234	0.000132
M	155	H155H	caT	caC	1	1	B.1.243	0.00007
M	155	H155H	caT	caC	1	1	B.1.251	0.021739
M	155	H155H	caT	caC	1	1	B.1.277	0.02381
M	155	H155H	caT	caC	1	1	B.1.351.2	0.000303
M	155	H155H	caT	caC	1	1	B.1.36	0.000146
M	155	H155H	caT	caC	1	1	B.1.36.7	0.004
M	155	H155H	caT	caC	1	1	B.1.456	0.003268
M	155	H155H	caT	caC	1	1	B.1.470	0.001404
M	155	H155H	caT	caC	1	1	B.1.517	0.000427
M	155	H155H	caT	caC	1	1	B.1.568	0.001111
M	155	H155H	caT	caC	1	1	B.1.621	0.000089
M	155	H155H	caT	caC	1	1	P.1.15	0.000232
M	155	H155H	caT	caC	1	1	R.1	0.00009

CoV-GLUE is still in development. CoV-GLUE was originally developed as part of COG-UK by Josh Singer using the GLUE framework at the MRC-University of Glasgow Centre for Virus Research (CVR). In 2021 it was redeveloped by Richard Orton to scale to the millions of genome sequences available. We acknowledge support from the MRC (MC_UU_12014/12), WT (220977/Z/20/Z) and UKRI G2P (MR/W005611/1). Please contact Richard Orton with any queries: Richard.Orton@glasgow.ac.uk

CoV-GLUE uses sequence data from GISAID. GISAID data provided via this web application is subject to GISAID's Terms and Conditions.